Slc12a3 (solute carrier family 12 member 3) - Rat Genome Database

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Gene: Slc12a3 (solute carrier family 12 member 3) Rattus norvegicus
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Symbol: Slc12a3
Name: solute carrier family 12 member 3
RGD ID: 3686
Description: Enables enzyme binding activity and sodium:chloride symporter activity. Involved in chloride transport and sodium ion transmembrane transport. Located in apical plasma membrane and vesicle. Is active in plasma membrane. Human ortholog(s) of this gene implicated in Gitelman syndrome and essential hypertension. Orthologous to human SLC12A3 (solute carrier family 12 member 3); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102553442; na-Cl symporter; NCC; solute carrier family 12 (sodium/chloride transporter), member 3; solute carrier family 12 (sodium/chloride transporters), member 3; solute carrier family 12 member 3-like; solute carrier family 12, member 3; thiazide-sensitive Na-Cl cotransporter; thiazide-sensitive sodium-chloride cotransporter; TSC
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,636,594 - 10,690,008 (-)NCBIGRCr8
mRatBN7.21910,630,651 - 10,679,250 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,631,393 - 10,669,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,594,046 - 10,632,542 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,360,884 - 11,399,380 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,647,871 - 10,686,368 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,106,033 - 11,144,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,106,033 - 11,144,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,084,193 - 11,122,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,070,329 - 11,109,634 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,075,156 - 11,114,460 (-)NCBI
Celera1910,518,752 - 10,557,092 (-)NCBICelera
Cytogenetic Map19p13-p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
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Original Reference(s)
Slc12a3Ratessential hypertension severityISO1580586DNA:snp:intron:g.1784C>T (human)RGD 
Slc12a3Ratessential hypertension  ISOSLC12A3 (Homo sapiens)1580589DNA:missense mutation:cds:p.R904Q (human)RGD 
Slc12a3RatExperimental Liver Cirrhosis  IEP 1580587protein:altered expression:kidney (rat)RGD 
Slc12a3RatGitelman syndrome  ISOSLC12A3 (Homo sapiens)1580588DNA:snp:intron:IVS9+1G>T (human)RGD 
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Original Reference(s)
Slc12a3Rataortic disease  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Familial aortopathyClinVarPMID:10988270 more ...
Slc12a3RatBardet-Biedl syndrome  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Bardet-Biedl syndromeClinVarPMID:11285252 more ...
Slc12a3RatBartter disease  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Bartter's syndromeClinVarPMID:10988270 more ...
Slc12a3RatChromosome 16q12 Duplication Syndrome  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Chromosome 16q12 duplication syndromeClinVarPMID:25741868
Slc12a3Ratdevelopmental and epileptic encephalopathy  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Developmental and epileptic encephalopathyClinVarPMID:11285252 more ...
Slc12a3Ratearly infantile epileptic encephalopathy  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Early infantile epileptic encephalopathyClinVarPMID:11285252 more ...
Slc12a3Ratgenetic disease  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:10988270 more ...
Slc12a3RatGitelman syndrome  ISOSLC12A3 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:10516289 more ...
Slc12a3Rathypokalemia  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: HypokalemiaClinVarPMID:10988270 more ...
Slc12a3RatMuscle Weakness  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: Muscle weaknessClinVarPMID:10988270 more ...
Slc12a3RatMyalgia  ISOSLC12A3 (Homo sapiens)8554872ClinVar Annotator: match by term: MyalgiaClinVarPMID:10988270 more ...
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Original Reference(s)
Slc12a3RatGitelman syndrome  ISOSLC12A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:10561751
Slc12a3Rathypertension  ISOSLC12A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:18480177
Slc12a3Ratkidney disease  ISOSLC12A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:21865292
Slc12a3Ratvascular disease  ISOSLC12A3 (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:23348737
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Original Reference(s)
Slc12a3RatGitelman syndrome  ISSSlc12a3 (Mus musculus)13592920OMIM:263800MouseDO 
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Original Reference(s)
Slc12a3RatGitelman syndrome  ISOSLC12A3 (Homo sapiens)7240710 OMIM 

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Original Reference(s)
Slc12a3Rat1,1-dichloroethene decreases expressionISOSlc12a3 (Mus musculus)6480464vinylidene chloride results in decreased expression of SLC12A3 mRNACTDPMID:26682919
Slc12a3Rat1-naphthyl isothiocyanate decreases expressionEXP 64804641-Naphthylisothiocyanate results in decreased expression of SLC12A3 mRNACTDPMID:30723492
Slc12a3Rat17beta-estradiol decreases expressionISOSlc12a3 (Mus musculus)6480464Estradiol results in decreased expression of SLC12A3 mRNACTDPMID:39298647
Slc12a3Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOSlc12a3 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of SLC12A3 mRNACTDPMID:21570461
Slc12a3Rat3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine decreases expressionEXP 6480464Puromycin Aminonucleoside results in decreased expression of SLC12A3 proteinCTDPMID:15075188
Slc12a3Rat4,4'-sulfonyldiphenol decreases expressionISOSlc12a3 (Mus musculus)6480464bisphenol S results in decreased expression of SLC12A3 mRNACTDPMID:39298647
Slc12a3Rat4,4'-sulfonyldiphenol affects methylationISOSlc12a3 (Mus musculus)6480464bisphenol S affects the methylation of SLC12A3 geneCTDPMID:31683443
Slc12a3Rat4,4'-sulfonyldiphenol increases methylationISOSlc12a3 (Mus musculus)6480464bisphenol S results in increased methylation of SLC12A3 exonCTDPMID:33297965
Slc12a3Rat6-propyl-2-thiouracil decreases expressionEXP 6480464Propylthiouracil results in decreased expression of SLC12A3 mRNACTDPMID:24780913
Slc12a3Ratacrylamide decreases expressionEXP 6480464Acrylamide results in decreased expression of SLC12A3 mRNACTDPMID:28959563
Slc12a3Rataflatoxin B1 increases methylationISOSLC12A3 (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of SLC12A3 intronCTDPMID:30157460
Slc12a3RatAflatoxin B2 alpha increases methylationISOSLC12A3 (Homo sapiens)6480464aflatoxin B2 results in increased methylation of SLC12A3 intronCTDPMID:30157460
Slc12a3Ratammonium chloride affects expressionEXP 6480464Ammonium Chloride affects the expression of SLC12A3 mRNACTDPMID:16483693
Slc12a3Ratamphetamine decreases expressionEXP 6480464Amphetamine results in decreased expression of SLC12A3 mRNACTDPMID:30779732
Slc12a3Ratantirheumatic drug decreases expressionISOSLC12A3 (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of SLC12A3 mRNACTDPMID:24449571
Slc12a3Rataristolochic acid A increases expressionISOSLC12A3 (Homo sapiens)6480464aristolochic acid I results in increased expression of SLC12A3 mRNACTDPMID:33212167
Slc12a3Ratarsane affects methylationISOSLC12A3 (Homo sapiens)6480464Arsenic affects the methylation of SLC12A3 geneCTDPMID:25304211
Slc12a3Ratarsenic atom affects methylationISOSLC12A3 (Homo sapiens)6480464Arsenic affects the methylation of SLC12A3 geneCTDPMID:25304211
Slc12a3Ratbendroflumethiazide increases response to substanceEXP 6480464SLC12A3 protein results in increased susceptibility to BendroflumethiazideCTDPMID:18480177
Slc12a3Ratbenzo[a]pyrene multiple interactionsISOSlc12a3 (Mus musculus)6480464Benzo(a)pyrene promotes the reaction [AHR protein binds to SLC12A3 promoter]CTDPMID:19654925

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Biological Process
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Original Reference(s)
Slc12a3Ratcell volume homeostasis involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratchloride ion homeostasis involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratchloride transmembrane transport involved_inIEAGO:00153781600115GO_REF:0000108GOCGO_REF:0000108
Slc12a3Ratchloride transmembrane transport involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratchloride transmembrane transport involved_inIEAGO:00153771600115GO_REF:0000108GOCGO_REF:0000108
Slc12a3Ratchloride transport  IMP 69999 RGD 
Slc12a3Ratmonoatomic ion transport involved_inIEAUniProtKB-KW:KW-04061600115GO_REF:0000043UniProtGO_REF:0000043
Slc12a3Ratmonoatomic ion transport involved_inIEAInterPro:IPR002948 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Slc12a3Ratpotassium ion homeostasis involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratpotassium ion import across plasma membrane involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratrenal sodium ion absorption involved_inISOSLC12A3 (Homo sapiens)1624291 PMID:18270262RGDPMID:18270262
Slc12a3Ratrenal sodium ion absorption involved_inIDA 8553410PMID:16275913BHF-UCL 
Slc12a3Ratrenal sodium ion absorption involved_inIEAUniProtKB:P55017 and ensembl:ENSP000004561491600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratresponse to aldosterone involved_inIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratresponse to aldosterone involved_inISOSlc12a3 (Mus musculus)1624291 PMID:19690383RGDPMID:19690383
Slc12a3Ratresponse to salt involved_inISOSlc12a3 (Mus musculus)1624291 PMID:22846565RGDPMID:22846565
Slc12a3Ratresponse to salt involved_inIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratsodium ion homeostasis involved_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratsodium ion transmembrane transport involved_inIDA 8553410PMID:16275913BHF-UCL 
Slc12a3Ratsodium ion transmembrane transport involved_inISOSlc12a3 (Mus musculus)1624291 PMID:24026181RGDPMID:24026181
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Cellular Component
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Original Reference(s)
Slc12a3Ratapical plasma membrane  IDA 1624222 RGD 
Slc12a3Ratapical plasma membrane located_inIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratapical plasma membrane located_inIEAUniProtKB-SubCell:SL-00151600115GO_REF:0000044UniProtGO_REF:0000044
Slc12a3Ratapical plasma membrane located_inIEAUniProtKB:P55017 and ensembl:ENSP000004561491600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratapical plasma membrane is_active_inIBAMGI:101924 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Slc12a3Ratapical plasma membrane located_inIEAARBA:ARBA000264131600115GO_REF:0000117UniProtGO_REF:0000117
Slc12a3Ratapical plasma membrane located_inISSUniProtKB:P591581600115GO_REF:0000024UniProtGO_REF:0000024
Slc12a3Ratapical plasma membrane located_inISOSlc12a3 (Mus musculus)1624291 PMID:11423561 more ...RGDPMID:11423561 more ...
Slc12a3Ratapical plasma membrane located_inISOSLC12A3 (Homo sapiens)1624291 PMID:21397062RGDPMID:21397062
Slc12a3Ratcytosol located_inIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratcytosol located_inISOSlc12a3 (Mus musculus)1624291 PMID:10516289RGDPMID:10516289
Slc12a3Ratextracellular exosome located_inISOSLC12A3 (Homo sapiens)1624291 PMID:21082674RGDPMID:21082674
Slc12a3Ratextracellular exosome located_inIEAUniProtKB:P55017 and ensembl:ENSP000004561491600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Slc12a3Ratmembrane located_inIEAInterPro:IPR002948 more ...1600115GO_REF:0000002InterProGO_REF:0000002
Slc12a3Ratplasma membrane is_active_inIDA 1624220PMID:16887815UniProt 
Slc12a3Ratplasma membrane is_active_inISOSlc12a3 (Mus musculus)1624291 PMID:36370249RGDPMID:36370249
Slc12a3Ratplasma membrane located_inIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratplasma membrane located_inIDA 8553410PMID:16275913UniProt 
Slc12a3Ratplasma membrane located_inISOSlc12a3 (Mus musculus)1624291 PMID:10516289RGDPMID:10516289
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Molecular Function
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Original Reference(s)
Slc12a3RatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Slc12a3Ratchloride:monoatomic cation symporter activity enablesIEAInterPro:IPR0048421600115GO_REF:0000002InterProGO_REF:0000002
Slc12a3Ratenzyme binding  IPIPdia3 (Rattus norvegicus)632898 RGD 
Slc12a3Ratmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Slc12a3Ratnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Slc12a3Ratprotein binding enablesISOSlc12a3 (Mus musculus)1624291UniProtKB:Q61098 and PMID:26099046RGDPMID:26099046
Slc12a3Ratprotein binding enablesISOSLC12A3 (Homo sapiens)1624291UniProtKB:Q9UH77 and PMID:22406640RGDPMID:22406640
Slc12a3Ratprotein serine/threonine kinase binding enablesIPIUniProtKB:Q9BYP78553410PMID:16275913BHF-UCL 
Slc12a3Ratsodium ion transmembrane transporter activity enablesISOSlc12a3 (Mus musculus)1624291 PMID:10516289RGDPMID:10516289
Slc12a3Ratsodium ion transmembrane transporter activity enablesIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratsodium ion transmembrane transporter activity enablesIDA 8553410PMID:16275913UniProt 
Slc12a3Ratsodium:chloride symporter activity  IMP 69999 RGD 
Slc12a3Ratsodium:chloride symporter activity enablesIEAUniProtKB:P59158 and ensembl:ENSMUSP000000342181600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratsodium:chloride symporter activity enablesIEAUniProtKB:P55017 and ensembl:ENSP000004561491600115GO_REF:0000107EnsemblGO_REF:0000107
Slc12a3Ratsodium:chloride symporter activity enablesISOSlc12a3 (Mus musculus)1624291 PMID:15068971RGDPMID:15068971
Slc12a3Ratsodium:chloride symporter activity enablesISOSLC12A3 (Homo sapiens)1624291 PMID:18270262 more ...RGDPMID:18270262 more ...
Slc12a3Ratsodium:chloride symporter activity enablesIDA 155663524PMID:10894798UniProt 
Slc12a3Ratsodium:chloride symporter activity enablesIEAARBA:ARBA000349651600115GO_REF:0000117UniProtGO_REF:0000117
Slc12a3Ratsodium:chloride symporter activity  IDA 1624221 RGD 
Slc12a3Ratsodium:potassium:chloride symporter activity enablesIBAFB:FBgn0036279 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
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Imported Annotations - SMPDB

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Original Reference(s)
Slc12a3Ratamiloride pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00133
Slc12a3Ratbendroflumethiazide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00090
Slc12a3Ratbumetanide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00088
Slc12a3Ratchlorothiazide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00078
Slc12a3Ratchlorthalidone pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00122
Slc12a3Ratcystinuria pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00723
Slc12a3Rateplerenone pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00135
Slc12a3Ratetacrynic acid pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00097
Slc12a3Ratfurosemide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00115
Slc12a3RatHartnup disease pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00189
Slc12a3Rathydrochlorothiazide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00100
Slc12a3Rathydroflumethiazide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00108
Slc12a3Ratiminoglycinuria pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00193
Slc12a3Ratlysinuric protein intolerance pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00197
Slc12a3Ratlysinuric protein intolerance pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00585
Slc12a3Ratmetolazone pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00105
Slc12a3Ratspironolactone pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00134
Slc12a3Rattorasemide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00118
Slc12a3Rattriamterene pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00132
Slc12a3Rattrichlormethiazide pharmacodynamics pathway  ISOSLC12A3 (Homo sapiens)10402751 SMPDBSMP:00121
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Reference Title
Reference Citation
1. Molecular cloning, primary structure, and characterization of two members of the mammalian electroneutral sodium-(potassium)-chloride cotransporter family expressed in kidney. Gamba G, etal., J Biol Chem 1994 Jul 1;269(26):17713-22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. The thiazide-sensitive Na(+)-Cl(-) cotransporter gene, C1784T, and adrenergic receptor-beta3 gene, T727C, may be gene polymorphisms susceptible to the antihypertensive effect of thiazide diuretics. Matayoshi T, etal., Hypertens Res. 2004 Nov;27(11):821-33.
5. G2736A polymorphism of thiazide-sensitive Na-Cl cotransporter gene predisposes to hypertension in young women. Matsuo A, etal., J Hypertens. 2004 Nov;22(11):2123-7.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Characterization of the thiazide-sensitive Na(+)-Cl(-) cotransporter: a new model for ions and diuretics interaction. Monroy A, etal., Am J Physiol Renal Physiol. 2000 Jul;279(1):F161-9. doi: 10.1152/ajprenal.2000.279.1.F161.
8. Affinity-defining domains in the Na-Cl cotransporter: a different location for Cl- and thiazide binding. Moreno E, etal., J Biol Chem. 2006 Jun 23;281(25):17266-75. Epub 2006 Apr 19.
9. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. The Na+:Cl- cotransporter is activated and phosphorylated at the amino-terminal domain upon intracellular chloride depletion. Pacheco-Alvarez D, etal., J Biol Chem. 2006 Sep 29;281(39):28755-63. Epub 2006 Aug 3.
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. GOA pipeline RGD automated data pipeline
14. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Gitelman syndrome: genetic and expression analysis of the thiazide-sensitive sodium-chloride transporter in blood cells. Riancho JA, etal., Nephrol Dial Transplant. 2006 Jan;21(1):217-20. Epub 2005 Oct 12.
17. WNK3 kinase is a positive regulator of NKCC2 and NCC, renal cation-Cl- cotransporters required for normal blood pressure homeostasis. Rinehart J, etal., Proc Natl Acad Sci U S A. 2005 Nov 15;102(46):16777-82. Epub 2005 Nov 7.
18. Redistribution of distal tubule Na+-Cl- cotransporter (NCC) in response to a high-salt diet. Sandberg MB, etal., Am J Physiol Renal Physiol. 2006 Aug;291(2):F503-8. Epub 2006 Mar 22.
19. Renal tubule-specific transcription and chromosomal localization of rat thiazide-sensitive na-cl cotransporter gene. Taniyama Y, etal., J Biol Chem 2001 Jul 13;276(28):26260-8.
20. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
1 to 20 of 22 rows
PMID:10516289   PMID:11423561   PMID:12388412   PMID:12538726   PMID:12837683   PMID:15149970   PMID:15356206   PMID:16449357   PMID:16495212   PMID:17507603   PMID:18391953   PMID:18440307  
PMID:18480177   PMID:18701621   PMID:19056867   PMID:19144688   PMID:19202345   PMID:20007345   PMID:20458365   PMID:21082674   PMID:21157372   PMID:21397062   PMID:22651238   PMID:23376485  
PMID:23533145   PMID:24668812   PMID:24920754   PMID:25587121   PMID:25925254   PMID:26608659   PMID:28003191   PMID:28356292   PMID:29767556   PMID:29846116   PMID:36961378  



Slc12a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,636,594 - 10,690,008 (-)NCBIGRCr8
mRatBN7.21910,630,651 - 10,679,250 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,631,393 - 10,669,091 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,594,046 - 10,632,542 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,360,884 - 11,399,380 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,647,871 - 10,686,368 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01911,106,033 - 11,144,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1911,106,033 - 11,144,641 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01911,084,193 - 11,122,657 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41911,070,329 - 11,109,634 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11911,075,156 - 11,114,460 (-)NCBI
Celera1910,518,752 - 10,557,092 (-)NCBICelera
Cytogenetic Map19p13-p12NCBI
SLC12A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,865,207 - 56,915,850 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,865,207 - 56,915,850 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,899,119 - 56,949,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,456,643 - 55,504,850 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,456,642 - 55,504,850NCBI
Celera1641,398,377 - 41,450,052 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,768,662 - 42,819,218 (+)NCBIHuRef
CHM1_11658,307,135 - 58,357,791 (+)NCBICHM1_1
T2T-CHM13v2.01662,661,526 - 62,712,168 (+)NCBIT2T-CHM13v2.0
Slc12a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,055,737 - 95,092,850 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,055,829 - 95,092,842 (+)EnsemblGRCm39 Ensembl
GRCm38894,329,109 - 94,366,222 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,329,201 - 94,366,214 (+)EnsemblGRCm38mm10GRCm38
MGSCv37896,853,108 - 96,890,122 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,218,355 - 97,255,092 (+)NCBIMGSCv36mm8
Celera898,660,930 - 98,697,944 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.46NCBI
Slc12a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,553,758 - 14,587,602 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,553,752 - 14,588,317 (+)NCBIChiLan1.0ChiLan1.0
SLC12A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,316,962 - 66,386,655 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,237,646 - 72,307,205 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,142,797 - 37,193,713 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,276,026 - 56,326,973 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,276,049 - 56,324,528 (+)Ensemblpanpan1.1panPan2
SLC12A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,413,737 - 59,449,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,413,828 - 59,449,081 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha256,042,573 - 56,077,948 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,952,797 - 59,988,344 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,952,888 - 59,988,297 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,783,974 - 56,819,378 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,791,053 - 57,826,469 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,685,512 - 58,720,937 (-)NCBIUU_Cfam_GSD_1.0
Slc12a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,512,705 - 50,545,228 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,044,106 - 9,076,307 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,044,099 - 9,076,301 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC12A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,844,600 - 18,885,476 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,844,752 - 18,885,497 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SLC12A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1542,808,773 - 42,877,714 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl542,811,597 - 42,862,002 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604733,488,318 - 33,536,531 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc12a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474629,098,254 - 29,132,752 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474629,087,867 - 29,132,793 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Slc12a3
308 total Variants


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
19 11091209 11091210 C A snv SS/JrHsdMcwi (MCW) View more Information


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
19 11104956 11104957 G A snv KFRS3B/Kyo (KyushuU) View more Information


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain Variant Page
19 11131865 11131866 T C snv ACI/EurMcwi (RGD) View more Information

Predicted Target Of
Summary Value
Count of predictions:303
Count of miRNA genes:183
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000025377
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 19 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032318023069265Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat

1 to 10 of 19 rows
BF391454  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,670,522 - 10,670,696 (+)MAPPERmRatBN7.2
Rnor_6.01911,146,073 - 11,146,246NCBIRnor6.0
Rnor_5.01911,124,089 - 11,124,262UniSTSRnor5.0
RGSC_v3.41911,111,066 - 11,111,239UniSTSRGSC3.4
Celera1910,558,524 - 10,558,697UniSTS
RH 3.4 Map1997.5UniSTS
Cytogenetic Map19p14-p12UniSTS
DXS1162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21910,667,970 - 10,668,444 (+)MAPPERmRatBN7.2
Rnor_6.01911,143,521 - 11,143,994NCBIRnor6.0
Rnor_5.01911,121,537 - 11,122,010UniSTSRnor5.0
RGSC_v3.41911,108,514 - 11,108,987UniSTSRGSC3.4
Celera1910,555,972 - 10,556,445UniSTS
Cytogenetic Map19p14-p12UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 83 82 51 25 51 6 209 96 93 45 60 31



Ensembl Acc Id: ENSRNOT00000081246   ⟹   ENSRNOP00000070064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1910,631,393 - 10,669,091 (-)Ensembl
Rnor_6.0 Ensembl1911,106,033 - 11,144,641 (-)Ensembl
RefSeq Acc Id: NM_019345   ⟹   NP_062218
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,636,596 - 10,675,050 (-)NCBI
mRatBN7.21910,630,651 - 10,669,108 (-)NCBI
Rnor_6.01911,106,033 - 11,144,641 (-)NCBI
Rnor_5.01911,084,193 - 11,122,657 (-)NCBI
RGSC_v3.41911,070,329 - 11,109,634 (-)RGD
Celera1910,518,752 - 10,557,092 (-)RGD
Sequence:
RefSeq Acc Id: XM_063278264   ⟹   XP_063134334
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,636,594 - 10,690,008 (-)NCBI
RefSeq Acc Id: XM_063278265   ⟹   XP_063134335
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,636,594 - 10,690,008 (-)NCBI
RefSeq Acc Id: XM_063278266   ⟹   XP_063134336
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81910,636,594 - 10,690,008 (-)NCBI
Protein RefSeqs NP_062218 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134334 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134335 (Get FASTA)   NCBI Sequence Viewer  
  XP_063134336 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA21252 (Get FASTA)   NCBI Sequence Viewer  
  EDL87346 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000070064
GenBank Protein P55018 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_062218   ⟸   NM_019345
- UniProtKB: P55018 (UniProtKB/Swiss-Prot),   G3V8G0 (UniProtKB/TrEMBL),   A6JY68 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000070064   ⟸   ENSRNOT00000081246
RefSeq Acc Id: XP_063134334   ⟸   XM_063278264
- Peptide Label: isoform X1
- UniProtKB: P55018 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063134336   ⟸   XM_063278266
- Peptide Label: isoform X3
- UniProtKB: P55018 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063134335   ⟸   XM_063278265
- Peptide Label: isoform X2
- UniProtKB: P55018 (UniProtKB/Swiss-Prot)
Name Modeler Protein Id AA Range Protein Structure
AF-P55018-F1-model_v2 AlphaFold P55018 1-1002 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13700947
Promoter ID:EPDNEW_R11471
Type:single initiation site
Name:Slc12a3_1
Description:solute carrier family 12 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01911,144,657 - 11,144,717EPDNEW


1 to 24 of 24 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-6489 BioCyc
Ensembl Genes ENSRNOG00000057072 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000081246 ENTREZGENE
Gene3D-CATH Amino acid/polyamine transporter I UniProtKB/Swiss-Prot
InterPro AA-permease/SLC12A_dom UniProtKB/Swiss-Prot
  AA_permease_N UniProtKB/Swiss-Prot
  SLC12_C UniProtKB/Swiss-Prot
  SLC12A3 UniProtKB/Swiss-Prot
  SLC12A_fam UniProtKB/Swiss-Prot
KEGG Report rno:54300 UniProtKB/Swiss-Prot
NCBI Gene 54300 ENTREZGENE
PANTHER PTHR11827 UniProtKB/Swiss-Prot
  PTHR11827:SF9 UniProtKB/Swiss-Prot
Pfam AA_permease UniProtKB/Swiss-Prot
  AA_permease_N UniProtKB/Swiss-Prot
  SLC12 UniProtKB/Swiss-Prot
PharmGKB SLC12A3 RGD
PhenoGen Slc12a3 PhenoGen
PRINTS NACLTRNSPORT UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000057072 RatGTEx
TIGR TC207071
UniProt A6JY68 ENTREZGENE, UniProtKB/TrEMBL
  G3V8G0 ENTREZGENE, UniProtKB/TrEMBL
  P55018 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 24 of 24 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Slc12a3  solute carrier family 12 member 3  LOC102553442  solute carrier family 12 member 3-like  Data merged from RGD:7680931 737654 PROVISIONAL
2016-02-25 Slc12a3  solute carrier family 12 member 3  Slc12a3  solute carrier family 12 (sodium/chloride transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102553442  solute carrier family 12 member 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2013-08-02 Slc12a3  solute carrier family 12 (sodium/chloride transporter), member 3  Slc12a3  solute carrier family 12 (sodium/chloride transporters), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-19 Slc12a3  solute carrier family 12 (sodium/chloride transporters), member 3  Slc12a3  solute carrier family 12, member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Slc12a3  solute carrier family 12, member 3      Symbol and Name status set to approved 70586 APPROVED
2002-02-27 Slc12a3  solute carrier family 12, member 3      Name updated to reflect Human and Mouse nomenclature 70292 APPROVED
2001-12-12 Slc12a3  Thiazide-sensitive Na-Cl cotransporter      Name updated to reflect Human and Mouse nomenclature 68673 APPROVED

Note Type Note Reference
gene_disease mutation of the human homolog causes Gitelman's syndrome 68673
gene_drugs is a target of thiazide diuretics 68673
gene_expression expressed specifically in the kidney 68673
gene_function acts as a sodium/chloride cotransporter 68673
gene_function acts as a sodium/chloride cotransporter 69999
gene_process may be involved in reabsorption of NaCl in the kidney 68673
gene_process may be involved in reabsorption of NaCl in the kidney 69999
gene_process may play a role in acid-base balance 68673
gene_process may play a role in acid-base balance 69999