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Gene: Pkib (cAMP-dependent protein kinase inhibitor beta) Rattus norvegicus

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Symbol:

Pkib

Name:

cAMP-dependent protein kinase inhibitor beta

RGD ID:

3335

Description:

Predicted to enable cAMP-dependent protein kinase inhibitor activity. Predicted to be active in cytoplasm and nucleus. Orthologous to human PKIB (cAMP-dependent protein kinase inhibitor beta); INTERACTS WITH 1,3-dinitrobenzene; 17alpha-ethynylestradiol; 17beta-estradiol 3-benzoate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cAMP-dependent protein kinase (catalytic subunit binding) inhibtor 2; cAMP-dependent protein kinase inhibitor, testis isoform; hypothetical protein LOC100362071; LOC100362071; PKI-beta; PKINH; Prkacn2; protein kinase (cAMP dependent, catalytic) inhibitor beta; protein kinase (cAMP-dependent, catalytic) inhibitor beta; protein kinase inhibitor beta; protein kinase inhibitor beta cAMP dependent testis specific; protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta; protein kinase inhibitor beta, cAMP dependent, catalytic; protein kinase inhibitor beta, cAMP dependent, testis specific; protein kinase inhibitor, beta; RATPKINH

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	37,511,564 - 37,608,607 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	37,512,822 - 37,608,401 (+)	Ensembl				GRCr8
mRatBN7.2	20	36,965,172 - 37,062,190 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	36,905,340 - 37,062,187 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	37,986,335 - 38,081,670 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	37,377,047 - 37,472,376 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	38,104,092 - 38,199,428 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	40,616,868 - 40,712,598 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	40,618,128 - 40,712,592 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	36,655,506 - 36,750,474 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	38,280,714 - 38,375,485 (+)	NCBI		Celera
RGSC_v3.1	20	36,669,342 - 36,764,483 (+)	NCBI
Cytogenetic Map	20	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,3-dinitrobenzene (EXP)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

17beta-estradiol 3-benzoate (EXP)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bexarotene (EXP)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

Butylbenzyl phthalate (ISO)

calcitriol (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

chlorpyrifos (EXP)

choline (ISO)

clozapine (EXP)

coumestrol (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diazinon (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

fenofibrate (ISO)

folic acid (ISO)

genistein (ISO)

haloperidol (EXP)

Indeno[1,2,3-cd]pyrene (ISO)

indole-3-methanol (EXP)

L-methionine (ISO)

maneb (ISO)

methylmercury chloride (ISO)

N-methyl-N-nitrosourea (EXP)

N-nitrosodiethylamine (EXP)

ochratoxin A (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (EXP)

paracetamol (ISO)

paraquat (EXP,ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (ISO)

picene (ISO)

pirinixic acid (EXP,ISO)

poly(I:C) (EXP)

potassium dichromate (ISO)

resveratrol (ISO)

rotenone (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

T-2 toxin (EXP)

tamoxifen (EXP,ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

thiram (ISO)

topotecan (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of cAMP-dependent protein kinase activity (ISO)

positive regulation of telomere maintenance (ISO)

Cellular Component

cytoplasm (IBA)

nucleus (IBA)

Molecular Function

cAMP-dependent protein kinase inhibitor activity (IBA,IEA,ISO)

protein binding (ISO)

protein kinase inhibitor activity (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Correlation between genetic and cytogenetic maps of the rat.	Andoh Y, etal., Mamm Genome 1998 Apr;9(4):287-93.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	A dual-specificity isoform of the protein kinase inhibitor PKI produced by alternate gene splicing.	Kumar P and Walsh DA, Biochem J 2002 Mar 15;362(Pt 3):533-7.
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
9.	Molecular cloning of a rat testis form of the inhibitor protein of cAMP-dependent protein kinase.	Van Patten SM, etal., Proc Natl Acad Sci U S A 1991 Jun 15;88(12):5383-7.

Additional References at PubMed

PMID:7905001	PMID:12060780	PMID:16406266	PMID:21531765

Genomics

Comparative Map Data

Pkib
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	37,511,564 - 37,608,607 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	37,512,822 - 37,608,401 (+)	Ensembl				GRCr8
mRatBN7.2	20	36,965,172 - 37,062,190 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	36,905,340 - 37,062,187 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	37,986,335 - 38,081,670 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	37,377,047 - 37,472,376 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	38,104,092 - 38,199,428 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	40,616,868 - 40,712,598 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	40,618,128 - 40,712,592 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	36,655,506 - 36,750,474 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	38,280,714 - 38,375,485 (+)	NCBI		Celera
RGSC_v3.1	20	36,669,342 - 36,764,483 (+)	NCBI
Cytogenetic Map	20	q12	NCBI

PKIB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	122,471,921 - 122,726,373 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	122,471,917 - 122,726,375 (+)	Ensembl			hg38	GRCh38
GRCh37	6	122,793,066 - 123,047,518 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	122,834,761 - 123,089,217 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	6	122,973,075 - 123,089,216	NCBI
Celera	6	123,537,370 - 123,791,807 (+)	NCBI		Celera
Cytogenetic Map	6	q22.31	NCBI
HuRef	6	120,370,063 - 120,624,394 (+)	NCBI		HuRef
CHM1_1	6	123,056,898 - 123,311,328 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	123,660,238 - 123,914,654 (+)	NCBI		T2T-CHM13v2.0

Pkib
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	57,508,077 - 57,617,208 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	57,508,077 - 57,617,208 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	57,631,981 - 57,741,112 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	57,631,981 - 57,741,112 (+)	Ensembl			mm10	GRCm38
MGSCv37	10	57,351,787 - 57,460,918 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	57,320,496 - 57,429,527 (+)	NCBI		MGSCv36	mm8
Celera	10	58,450,664 - 58,558,969 (+)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	29.22	NCBI

Pkib
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	4,568,118 - 4,600,311 (+)	Ensembl
ChiLan1.0	NW_004955436	4,433,065 - 4,600,967 (+)	NCBI	ChiLan1.0	ChiLan1.0

PKIB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	142,466,019 - 142,722,252 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	140,375,363 - 140,621,377 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	120,373,497 - 120,517,119 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	124,496,954 - 124,640,260 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	124,612,910 - 124,640,260 (+)	Ensembl			panPan2	panpan1.1

PKIB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	61,960,466 - 62,049,553 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	61,967,129 - 62,088,547 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	62,770,335 - 62,859,412 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	62,164,880 - 62,254,010 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	62,171,111 - 62,314,381 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	62,099,443 - 62,188,400 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	61,887,392 - 61,976,219 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	62,535,714 - 62,624,781 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pkib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	112,839,078 - 112,945,229 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936802	1,130,218 - 1,236,822 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936802	1,130,341 - 1,236,715 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PKIB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	39,913,760 - 40,022,713 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	39,913,753 - 40,022,971 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PKIB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	51,080,860 - 51,198,353 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	51,078,369 - 51,198,438 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666040	23,381,455 - 23,496,516 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pkib
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624798	8,459,621 - 8,549,786 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pkib
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	18	34,362,744 - 34,405,357 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pkib
1423 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	431
Count of miRNA genes:	216
Interacting mature miRNAs:	251
Transcripts:	ENSRNOT00000001075, ENSRNOT00000057364
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat
70158	Bp60	Blood pressure QTL 60	3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	32156967	45978663	Rat

Markers in Region

D20Arb6

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	20	37,607,670 - 37,607,979 (+)	Marker Load Pipeline
mRatBN7.2	20	37,061,253 - 37,061,562 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	40,711,662 - 40,711,970	NCBI	Rnor6.0
Rnor_5.0	20	42,439,658 - 42,439,966	UniSTS	Rnor5.0
RGSC_v3.4	20	36,749,741 - 36,750,050	RGD	RGSC3.4
RGSC_v3.4	20	36,749,742 - 36,750,050	UniSTS	RGSC3.4
Celera	20	38,374,549 - 38,374,857	UniSTS
RGSC_v3.1	20	36,763,541 - 36,763,850	RGD
SHRSP x BN Map	20	26.3899	RGD
SHRSP x BN Map	20	26.3899	UniSTS
FHH x ACI Map	20	24.7799	RGD
Cytogenetic Map	20	q12-q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
17	11	57	174	91	90	59	118	59	6	370	207	11	146	79	92	31	22	22

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001076553	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001271158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_012627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256512	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF413572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC078880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG666532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG668634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231722	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M64092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001075 ⟹ ENSRNOP00000001075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	37,512,835 - 37,608,401 (+)	Ensembl
mRatBN7.2 Ensembl	20	36,966,410 - 37,062,187 (+)	Ensembl
Rnor_6.0 Ensembl	20	40,618,128 - 40,712,592 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000057364 ⟹ ENSRNOP00000054176

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	20	40,618,128 - 40,712,592 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082043 ⟹ ENSRNOP00000072523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	37,512,822 - 37,608,401 (+)	Ensembl
mRatBN7.2 Ensembl	20	36,905,340 - 37,061,982 (+)	Ensembl
Rnor_6.0 Ensembl	20	40,618,623 - 40,712,592 (+)	Ensembl

RefSeq Acc Id:

NM_001076553 ⟹ NP_001070021

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,512,837 - 37,608,607 (+)	NCBI
mRatBN7.2	20	36,966,410 - 37,062,190 (+)	NCBI
Rnor_6.0	20	40,618,128 - 40,712,598 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI
RGSC_v3.4	20	36,655,506 - 36,750,474 (+)	RGD
Celera	20	38,280,714 - 38,375,485 (+)	NCBI

Sequence:

show sequence

CGGCAGCGAGCTCCCGCCGCGTCGCAGCTCGGTGCCGCAGAGAGGCCGGTGGCAGGCGGCACCG
CGAGGGACCTGGCCCGGCGCCGCAAGCGTCTCTAGCGCGCAGCTGGGGTCATGATATACTGGAA
ACCACACAAGATTAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGAGAGGA
AAGATAAAGGAAAGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCCCATTT
TAACCACAGATTTCACCTGGGCCACAGGACACCATGGATGTGCACCCTGATGCCCCTGGGGGTC
AAAAGAAAACAGTGGAGAACGGCATGGGAGGCGGCAGCCCAGGAGCCCAGCAAGACTCTGTGAT
GAGGACAGATTCATCGGAGATGACTGATGTGGAATCTGTAATCAGCAGCTTCGCGTCTTCAGCA
AGGGCGGGCCGCCGCAATGCCTTACCCGACATCCAGAGTTCACTGGCTACAGGTGGATCCCCTG
ATCTTGCACTGAAGCTGGAGGCATTGGCTGTGAAGGAAGATGCAAAAATGAAGAATGAAGAGAA
AGACCAAGGCCAACCGAAAAAGCCCCTAGACGAAGACAAATAAAGGCTTAGAATTTATCAAGGG
TGTTGATTTTATGCACATTGAGAGACATAGCTATGCATTCCTGGGGTGTTTGATCTGGTAGTAA
CCATGGTAACCCATGGTAACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAGTAAT
TTTGTTATGATGCTATCCTTAAACTGCAGCTATGATACTGAAATAGAATATTAAAAGTTATTAC
CTTCAAATTGCACCCAAGGAAGGACACACTGTTTATATCCCAACAATATCCTATCTGTCTATCT
CGGGATTTACTTAGTCAGATATATGTTTAATTCTGTCTTAGCAAGTTAGAACCTTTTTCTTGGT
ATGTATAAATGGATACCTATTAATTTAATACTTTGTAGAATTTGTAGGAAATTATATTTTTGGT
GAGATAGAATTAGTAGTAAAAAAATCACTCTTATAAAATGTGTTTATTTTTCATTAAAATTGCA
CCATATTTCCTGCAAAATATTAGGAGAGATCTGGAAATATTGTAAAAGTTGTAACAACTTAAAC
ATCTCTATGATGTTTTTGTCTAATGTATTTTGCATCTAGTCTCGATGTATTGTGATTTTTAATA
TGGACTCACATAACATAAAATTTGTGACAAACTTGCTTAAAAGAAACATGTGTATTGAATAAAT
CTCACTATATTCCTTAACTTGGTTATATGTGTGCTTCTCATTTTAATATGGATTGTACAAGATA
TTGTGCTCTTTTTCTTAGACTGTTTGTCTCTAGGTTTTTGTGTGTGTACGCAAATTGTTGCTAG
AGTAATTTCATCAGGAATGCTGGTCTTAGTTTTTATATTTTTCCAAAGTATAATACTATAAGTT
AAAATAGCAAAATAAATGCTTTTAATATAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001271158 ⟹ NP_001258087

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,513,332 - 37,608,607 (+)	NCBI
mRatBN7.2	20	36,966,905 - 37,062,190 (+)	NCBI
Rnor_6.0	20	40,618,623 - 40,712,598 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI
Celera	20	38,281,209 - 38,375,485 (+)	NCBI

Sequence:

show sequence

GTGTCATTTACCAAGAGACCTCACCTTACCGGTTTTCCTCCATTCCTTGGGGTCATGATATACT
GGAAACCACACAAGATTAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGAG
AGGAAAGATAAAGGAAAGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCCC
ATTTTAACCACAGATTTACTCTGTGATGAGGACAGATTCATCGGAGATGACTGATGTGGAATCT
GTAATCAGCAGCTTCGCGTCTTCAGCAAGGGCGGGCCGCCGCAATGCCTTACCCGACATCCAGA
GTTCACTGGCTACAGGTGGATCCCCTGATCTTGCACTGAAGCTGGAGGCATTGGCTGTGAAGGA
AGATGCAAAAATGAAGAATGAAGAGAAAGACCAAGGCCAACCGAAAAAGCCCCTAGACGAAGAC
AAATAAAGGCTTAGAATTTATCAAGGGTGTTGATTTTATGCACATTGAGAGACATAGCTATGCA
TTCCTGGGGTGTTTGATCTGGTAGTAACCATGGTAACCCATGGTAACCTCTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTTCAGTAATTTTGTTATGATGCTATCCTTAAACTGCAGCTATGATA
CTGAAATAGAATATTAAAAGTTATTACCTTCAAATTGCACCCAAGGAAGGACACACTGTTTATA
TCCCAACAATATCCTATCTGTCTATCTCGGGATTTACTTAGTCAGATATATGTTTAATTCTGTC
TTAGCAAGTTAGAACCTTTTTCTTGGTATGTATAAATGGATACCTATTAATTTAATACTTTGTA
GAATTTGTAGGAAATTATATTTTTGGTGAGATAGAATTAGTAGTAAAAAAATCACTCTTATAAA
ATGTGTTTATTTTTCATTAAAATTGCACCATATTTCCTGCAAAATATTAGGAGAGATCTGGAAA
TATTGTAAAAGTTGTAACAACTTAAACATCTCTATGATGTTTTTGTCTAATGTATTTTGCATCT
AGTCTCGATGTATTGTGATTTTTAATATGGACTCACATAACATAAAATTTGTGACAAACTTGCT
TAAAAGAAACATGTGTATTGAATAAATCTCACTATATTCCTTAACTTGGTTATATGTGTGCTTC
TCATTTTAATATGGATTGTACAAGATATTGTGCTCTTTTTCTTAGACTGTTTGTCTCTAGGTTT
TTGTGTGTGTACGCAAATTGTTGCTAGAGTAATTTCATCAGGAATGCTGGTCTTAGTTTTTATA
TTTTTCCAAAGTATAATACTATAAGTTAAAATAGCAAAATAAATGCTTTTAATATAAAAAAAAA
AAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_012627 ⟹ NP_036759

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,512,837 - 37,608,607 (+)	NCBI
mRatBN7.2	20	36,966,410 - 37,062,190 (+)	NCBI
Rnor_6.0	20	40,618,128 - 40,712,598 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI
RGSC_v3.4	20	36,655,506 - 36,750,474 (+)	RGD
Celera	20	38,280,714 - 38,375,485 (+)	NCBI

Sequence:

show sequence

CGGCAGCGAGCTCCCGCCGCGTCGCAGCTCGGTGCCGCAGAGAGGCCGGTGGCAGGCGGCACCG
CGAGGGACCTGGCCCGGCGCCGCAAGCGTCTCTAGCGCGCAGCTGGGGTCATGATATACTGGAA
ACCACACAAGATTAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGAGAGGA
AAGATAAAGGAAAGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCCCATTT
TAACCACAGATTTACTCTGTGATGAGGACAGATTCATCGGAGATGACTGATGTGGAATCTGTAA
TCAGCAGCTTCGCGTCTTCAGCAAGGGCGGGCCGCCGCAATGCCTTACCCGACATCCAGAGTTC
ACTGGCTACAGGTGGATCCCCTGATCTTGCACTGAAGCTGGAGGCATTGGCTGTGAAGGAAGAT
GCAAAAATGAAGAATGAAGAGAAAGACCAAGGCCAACCGAAAAAGCCCCTAGACGAAGACAAAT
AAAGGCTTAGAATTTATCAAGGGTGTTGATTTTATGCACATTGAGAGACATAGCTATGCATTCC
TGGGGTGTTTGATCTGGTAGTAACCATGGTAACCCATGGTAACCTCTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTTTTCAGTAATTTTGTTATGATGCTATCCTTAAACTGCAGCTATGATACTGA
AATAGAATATTAAAAGTTATTACCTTCAAATTGCACCCAAGGAAGGACACACTGTTTATATCCC
AACAATATCCTATCTGTCTATCTCGGGATTTACTTAGTCAGATATATGTTTAATTCTGTCTTAG
CAAGTTAGAACCTTTTTCTTGGTATGTATAAATGGATACCTATTAATTTAATACTTTGTAGAAT
TTGTAGGAAATTATATTTTTGGTGAGATAGAATTAGTAGTAAAAAAATCACTCTTATAAAATGT
GTTTATTTTTCATTAAAATTGCACCATATTTCCTGCAAAATATTAGGAGAGATCTGGAAATATT
GTAAAAGTTGTAACAACTTAAACATCTCTATGATGTTTTTGTCTAATGTATTTTGCATCTAGTC
TCGATGTATTGTGATTTTTAATATGGACTCACATAACATAAAATTTGTGACAAACTTGCTTAAA
AGAAACATGTGTATTGAATAAATCTCACTATATTCCTTAACTTGGTTATATGTGTGCTTCTCAT
TTTAATATGGATTGTACAAGATATTGTGCTCTTTTTCTTAGACTGTTTGTCTCTAGGTTTTTGT
GTGTGTACGCAAATTGTTGCTAGAGTAATTTCATCAGGAATGCTGGTCTTAGTTTTTATATTTT
TCCAAAGTATAATACTATAAGTTAAAATAGCAAAATAAATGCTTTTAATATAAAAAAAAAAAAA
AAAAAAA

hide sequence

RefSeq Acc Id:

XM_006256511 ⟹ XP_006256573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,527,834 - 37,608,403 (+)	NCBI
mRatBN7.2	20	36,981,423 - 37,061,986 (+)	NCBI
Rnor_6.0	20	40,632,184 - 40,712,394 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI

Sequence:

show sequence

CCTTTGTCCTTAATGAGAGAGTCTCACTATATAGCCACAGATAGTCTCATACAATATGTCTTCC
TCAGCCTCCCAAGTCCTGGAACCACAAGGGTGTTCAGCTCCAAATATGTGTGTTTTCCAGGAGC
ATTGTGGTTTAATTCTTGTGTTTCTCCACTTTTCTATGAACAGAAAGTAGGTAAACATTTAAGT
TCTTTGAAACAGTGAAGACTTTGGAAGTCATACTTTAAATGTGACTTAATAAATATTGGCTCAC
TTATTGTTTATTTCAGTACTTAGACTTTTCTAGATTTTTGCCTCCCTGGCCTTAGCTTTCCTGG
CAGATTCTGTAACTCTCCAAGGATAGAGTTCAAATCGAGGATGCATTCAAAGTATCCTTCATGC
TGGAAAATAACTCTTACTGGAGTTTTATTTAGCAACAGTGGAGAGTTTCCTGAGAAGCATGTGT
GTATATTATGTAACTAGTTATAGAATCAGGTACCTCTAGTGTCCTGTGAATCTGGCCCACTTGA
GAACCACTGAGCTGGGCATGTTCTTGGGAACAGCTGGGGCGAATGAAGCACTATTACCTAGCAG
TCCCTCTGGGGAAGTCATAAGGGATTGTTGCTAAGCAACCAGGGGCCTCTTGGTGCCACATCAT
CCTCCATGTCATGAGAGTCAAAGTGGTGGTGGGTCCACTCCCCTTGGGAGGAGCAGTACATCCT
GGGAGTGTCCGAACTACCCTCAGAGGCATGGTGTTATCAGGGTCATGATATACTGGAAACCACA
CAAGATTAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGAGAGGAAAGATA
AAGGAAAGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCCCATTTTAACCA
CAGATTTCACCTGGGCCACAGGACACCATGGATGTGCACCCTGATGCCCCTGGGGGTCAAAAGA
AAACAGTGGAGAACGGCATGGGAGGCGGCAGCCCAGGAGCCCAGCAAGACTCTGTGATGAGGAC
AGATTCATCGGAGATGACTGATGTGGAATCTGTAATCAGCAGCTTCGCGTCTTCAGCAAGGGCG
GGCCGCCGCAATGCCTTACCCGACATCCAGAGTTCACTGGCTACAGGTGGATCCCCTGATCTTG
CACTGAAGCTGGAGGCATTGGCTGTGAAGGAAGATGCAAAAATGAAGAATGAAGAGAAAGACCA
AGGCCAACCGAAAAAGCCCCTAGACGAAGACAAATAAAGGCTTAGAATTTATCAAGGGTGTTGA
TTTTATGCACATTGAGAGACATAGCTATGCATTCCTGGGGTGTTTGATCTGGTAGTAACCATGG
TAACCCATGGTAACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAGTAATTTTGTT
ATGATGCTATCCTTAAACTGCAGCTATGATACTGAAATAGAATATTAAAAGTTATTACCTTCAA
ATTGCACCCAAGGAAGGACACACTGTTTATATCCCAACAATATCCTATCTGTCTATCTCGGGAT
TTACTTAGTCAGATATATGTTTAATTCTGTCTTAGCAAGTTAGAACCTTTTTCTTGGTATGTAT
AAATGGATACCTATTAATTTAATACTTTGTAGAATTTGTAGGAAATTATATTTTTGGTGAGATA
GAATTAGTAGTAAAAAAATCACTCTTATAAAATGTGTTTATTTTTCATTAAAATTGCACCATAT
TTCCTGCAAAATATTAGGAGAGATCTGGAAATATTGTAAAAGTTGTAACAACTTAAACATCTCT
ATGATGTTTTTGTCTAATGTATTTTGCATCTAGTCTCGATGTATTGTGATTTTTAATATGGACT
CACATAACATAAAATTTGTGACAAACTTGCTTAAAAGAAACATGTGTATTGAATAAATCTCACT
ATATTCCTTAA

hide sequence

RefSeq Acc Id:

XM_006256512 ⟹ XP_006256574

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,511,586 - 37,608,403 (+)	NCBI
mRatBN7.2	20	36,965,172 - 37,061,986 (+)	NCBI
Rnor_6.0	20	40,616,868 - 40,712,394 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI

Sequence:

show sequence

AGCAGTAAGAACTCTGTACCATGGAGCCATCGCCTTAGTCCTCCCTTAAATTTTTAAATCAAAC
ATGCACATGTGTACTGGTGAATACACATATGTGCATGAGGCATGTGTATAATTAGAGCACAGTT
TATGGGAGCCGGTTTTCACTTTCCACCATCCAGCCACCGGCTCAGCCCAGCCGCATCTCAGAGA
AGGGGCGGCAGCGAGCTCCCGCCGCGTCGCAGCTCGGTGCCGCAGAGAGGCCGGTGGCAGGCGG
CACCGCGAGGGACCTGGCCCGGCGCCGCAAGCGTCTCTAGCGCGCAGCTGGGGTCATGATATAC
TGGAAACCACACAAGATTAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGA
GAGGAAAGATAAAGGAAAGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCC
CATTTTAACCACAGATTTCACCTGGGCCACAGGACACCATGGATGTGCACCCTGATGCCCCTGG
GGGTCAAAAGAAAACAGTGGAGAACGGCATGGGAGGCGGCAGCCCAGGAGCCCAGCAAGACTCT
GTGATGAGGACAGATTCATCGGAGATGACTGATGTGGAATCTGTAATCAGCAGCTTCGCGTCTT
CAGCAAGGGCGGGCCGCCGCAATGCCTTACCCGACATCCAGAGTTCACTGGCTACAGGTGGATC
CCCTGATCTTGCACTGAAGCTGGAGGCATTGGCTGTGAAGGAAGATGCAAAAATGAAGAATGAA
GAGAAAGACCAAGGCCAACCGAAAAAGCCCCTAGACGAAGACAAATAAAGGCTTAGAATTTATC
AAGGGTGTTGATTTTATGCACATTGAGAGACATAGCTATGCATTCCTGGGGTGTTTGATCTGGT
AGTAACCATGGTAACCCATGGTAACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCA
GTAATTTTGTTATGATGCTATCCTTAAACTGCAGCTATGATACTGAAATAGAATATTAAAAGTT
ATTACCTTCAAATTGCACCCAAGGAAGGACACACTGTTTATATCCCAACAATATCCTATCTGTC
TATCTCGGGATTTACTTAGTCAGATATATGTTTAATTCTGTCTTAGCAAGTTAGAACCTTTTTC
TTGGTATGTATAAATGGATACCTATTAATTTAATACTTTGTAGAATTTGTAGGAAATTATATTT
TTGGTGAGATAGAATTAGTAGTAAAAAAATCACTCTTATAAAATGTGTTTATTTTTCATTAAAA
TTGCACCATATTTCCTGCAAAATATTAGGAGAGATCTGGAAATATTGTAAAAGTTGTAACAACT
TAAACATCTCTATGATGTTTTTGTCTAATGTATTTTGCATCTAGTCTCGATGTATTGTGATTTT
TAATATGGACTCACATAACATAAAATTTGTGACAAACTTGCTTAAAAGAAACATGTGTATTGAA
TAAATCTCACTATATTCCTTAA

hide sequence

RefSeq Acc Id:

XM_006256513 ⟹ XP_006256575

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,511,564 - 37,608,403 (+)	NCBI
mRatBN7.2	20	36,965,178 - 37,061,986 (+)	NCBI
Rnor_6.0	20	40,616,868 - 40,712,394 (+)	NCBI
Rnor_5.0	20	42,345,684 - 42,440,594 (+)	NCBI

Sequence:

show sequence

AGCAGTAAGAACTCTGTACCATGGAGCCATCGCCTTAGTCCTCCCTTAAATTTTTAAATCAAAC
ATGCACATGTGTACTGGTGAATACACATATGTGCATGAGGCATGTGTATAATTAGAGCACAGTT
TATGGGAGCCGGTTTTCACTTTCCACCATCCAGGGGTCATGATATACTGGAAACCACACAAGAT
TAGTCTGGGGAGGCAGAAACCATAAAGCCCCTGAGACTAGGTTCGGAGAGGAAAGATAAAGGAA
AGACCCCCTCTCAGCTTCACCCTTTACCTGTCTCAGAAACAACAGCCCATTTTAACCACAGATT
TCACCTGGGCCACAGGACACCATGGATGTGCACCCTGATGCCCCTGGGGGTCAAAAGAAAACAG
TGGAGAACGGCATGGGAGGCGGCAGCCCAGGAGCCCAGCAAGACTCTGTGATGAGGACAGATTC
ATCGGAGATGACTGATGTGGAATCTGTAATCAGCAGCTTCGCGTCTTCAGCAAGGGCGGGCCGC
CGCAATGCCTTACCCGACATCCAGAGTTCACTGGCTACAGGTGGATCCCCTGATCTTGCACTGA
AGCTGGAGGCATTGGCTGTGAAGGAAGATGCAAAAATGAAGAATGAAGAGAAAGACCAAGGCCA
ACCGAAAAAGCCCCTAGACGAAGACAAATAAAGGCTTAGAATTTATCAAGGGTGTTGATTTTAT
GCACATTGAGAGACATAGCTATGCATTCCTGGGGTGTTTGATCTGGTAGTAACCATGGTAACCC
ATGGTAACCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCAGTAATTTTGTTATGATG
CTATCCTTAAACTGCAGCTATGATACTGAAATAGAATATTAAAAGTTATTACCTTCAAATTGCA
CCCAAGGAAGGACACACTGTTTATATCCCAACAATATCCTATCTGTCTATCTCGGGATTTACTT
AGTCAGATATATGTTTAATTCTGTCTTAGCAAGTTAGAACCTTTTTCTTGGTATGTATAAATGG
ATACCTATTAATTTAATACTTTGTAGAATTTGTAGGAAATTATATTTTTGGTGAGATAGAATTA
GTAGTAAAAAAATCACTCTTATAAAATGTGTTTATTTTTCATTAAAATTGCACCATATTTCCTG
CAAAATATTAGGAGAGATCTGGAAATATTGTAAAAGTTGTAACAACTTAAACATCTCTATGATG
TTTTTGTCTAATGTATTTTGCATCTAGTCTCGATGTATTGTGATTTTTAATATGGACTCACATA
ACATAAAATTTGTGACAAACTTGCTTAAAAGAAACATGTGTATTGAATAAATCTCACTATATTC
CTTAA

hide sequence

RefSeq Acc Id:

XM_039098416 ⟹ XP_038954344

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,513,275 - 37,608,403 (+)	NCBI
mRatBN7.2	20	36,966,679 - 37,061,986 (+)	NCBI

RefSeq Acc Id:

XM_063278957 ⟹ XP_063135027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,511,577 - 37,608,403 (+)	NCBI

RefSeq Acc Id:

XM_063278958 ⟹ XP_063135028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	37,512,924 - 37,608,403 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001070021	(Get FASTA)	NCBI Sequence Viewer
	NP_001258087	(Get FASTA)	NCBI Sequence Viewer
	NP_001416335	(Get FASTA)	NCBI Sequence Viewer
	NP_036759	(Get FASTA)	NCBI Sequence Viewer
	XP_006256573	(Get FASTA)	NCBI Sequence Viewer
	XP_006256574	(Get FASTA)	NCBI Sequence Viewer
	XP_006256575	(Get FASTA)	NCBI Sequence Viewer
	XP_038954344	(Get FASTA)	NCBI Sequence Viewer
	XP_063135027	(Get FASTA)	NCBI Sequence Viewer
	XP_063135028	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA41879	(Get FASTA)	NCBI Sequence Viewer
	AAH78880	(Get FASTA)	NCBI Sequence Viewer
	AAL90456	(Get FASTA)	NCBI Sequence Viewer
	EDL92889	(Get FASTA)	NCBI Sequence Viewer
	EDL92890	(Get FASTA)	NCBI Sequence Viewer
	EDL92891	(Get FASTA)	NCBI Sequence Viewer
	EDL92892	(Get FASTA)	NCBI Sequence Viewer
	EDL92893	(Get FASTA)	NCBI Sequence Viewer
	EDL92894	(Get FASTA)	NCBI Sequence Viewer
	EDL92895	(Get FASTA)	NCBI Sequence Viewer
	P27775	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_036759 ⟸ NM_012627
- Peptide Label:	isoform 2
- UniProtKB:	P27775 (UniProtKB/Swiss-Prot), Q6AYW3 (UniProtKB/TrEMBL), A6K4C9 (UniProtKB/TrEMBL), A0A0G2K371 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTDSSEMTDVESVISSFASSARAGRRNALPDIQSSLATGGSPDLALKLEALAVKEDAKMKNEE KDQGQPKKPLDEDK hide sequence

RefSeq Acc Id:	NP_001070021 ⟸ NM_001076553
- Peptide Label:	isoform 1
- UniProtKB:	Q8R4R3 (UniProtKB/TrEMBL), F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVHPDAPGGQKKTVENGMGGGSPGAQQDSVMRTDSSEMTDVESVISSFASSARAGRRNALPDI QSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK hide sequence

RefSeq Acc Id:	NP_001258087 ⟸ NM_001271158
- Peptide Label:	isoform 2
- UniProtKB:	P27775 (UniProtKB/Swiss-Prot), Q6AYW3 (UniProtKB/TrEMBL), A6K4C9 (UniProtKB/TrEMBL), A0A0G2K371 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTDSSEMTDVESVISSFASSARAGRRNALPDIQSSLATGGSPDLALKLEALAVKEDAKMKNEE KDQGQPKKPLDEDK hide sequence

RefSeq Acc Id:	XP_006256574 ⟸ XM_006256512
- Peptide Label:	isoform X1
- UniProtKB:	Q8R4R3 (UniProtKB/TrEMBL), F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVHPDAPGGQKKTVENGMGGGSPGAQQDSVMRTDSSEMTDVESVISSFASSARAGRRNALPDI QSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK hide sequence

RefSeq Acc Id:	XP_006256575 ⟸ XM_006256513
- Peptide Label:	isoform X1
- UniProtKB:	Q8R4R3 (UniProtKB/TrEMBL), F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVHPDAPGGQKKTVENGMGGGSPGAQQDSVMRTDSSEMTDVESVISSFASSARAGRRNALPDI QSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK hide sequence

RefSeq Acc Id:	XP_006256573 ⟸ XM_006256511
- Peptide Label:	isoform X1
- UniProtKB:	Q8R4R3 (UniProtKB/TrEMBL), F6Q5H6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVHPDAPGGQKKTVENGMGGGSPGAQQDSVMRTDSSEMTDVESVISSFASSARAGRRNALPDI QSSLATGGSPDLALKLEALAVKEDAKMKNEEKDQGQPKKPLDEDK hide sequence

Ensembl Acc Id:

ENSRNOP00000072523 ⟸ ENSRNOT00000082043

Ensembl Acc Id:

ENSRNOP00000054176 ⟸ ENSRNOT00000057364

Ensembl Acc Id:

ENSRNOP00000001075 ⟸ ENSRNOT00000001075

RefSeq Acc Id:	XP_038954344 ⟸ XM_039098416
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063135027 ⟸ XM_063278957
- Peptide Label:	isoform X1
- UniProtKB:	F6Q5H6 (UniProtKB/TrEMBL), Q8R4R3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063135028 ⟸ XM_063278958
- Peptide Label:	isoform X1
- UniProtKB:	F6Q5H6 (UniProtKB/TrEMBL), Q8R4R3 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P27775-F1-model_v2	AlphaFold	P27775	1-71	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701636

Promoter ID:

EPDNEW_R12160

Type:

initiation region

Name:

Pkib_1

Description:

cAMP-dependent protein kinase inhibitor beta

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	20	40,618,118 - 40,618,178	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:3335	AgrOrtholog
BioCyc Gene	G2FUF-3586	BioCyc
Ensembl Genes	ENSRNOG00000000811	Ensembl
InterPro	cAMP_dep_PKI	UniProtKB/Swiss-Prot
NCBI Gene	24678	ENTREZGENE
PANTHER	PTHR15416	UniProtKB/Swiss-Prot
Pfam	PKI	UniProtKB/Swiss-Prot
PhenoGen	Pkib	PhenoGen
PIRSF	PKI	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000000811	RatGTEx
TIGR	TC219423
UniProt	A0A0G2K371	ENTREZGENE, UniProtKB/TrEMBL
	A0ABZ3NN79_RAT	UniProtKB/TrEMBL
	A6K4C9	ENTREZGENE, UniProtKB/TrEMBL
	A6K4D2_RAT	UniProtKB/TrEMBL
	F6Q5H6	ENTREZGENE, UniProtKB/TrEMBL
	IPKB_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6AYW3	ENTREZGENE
	Q8R4R3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-01-03	Pkib	cAMP-dependent protein kinase inhibitor beta	Pkib	protein kinase (cAMP-dependent, catalytic) inhibitor beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2015-07-29	Pkib	protein kinase (cAMP-dependent, catalytic) inhibitor beta	LOC100362071	hypothetical protein LOC100362071	Data merged from RGD:2318911	737654	PROVISIONAL
2010-05-05	LOC100362071	hypothetical protein LOC100362071			Symbol and Name status set to provisional	70820	PROVISIONAL
2009-05-18	Pkib	protein kinase (cAMP-dependent, catalytic) inhibitor beta	Pkib	protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-15	Pkib	protein kinase inhibitor beta, (cAMP-dependent, catalytic) inhibitor beta	Pkib	protein kinase inhibitor beta, cAMP dependent, catalytic	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	Pkib	protein kinase inhibitor beta, cAMP dependent, catalytic		protein kinase (cAMP dependent, catalytic) inhibitor beta	Name updated	1299863	APPROVED
2002-11-06	Pkib	protein kinase inhibitor, beta		protein kinase inhibitor beta, cAMP dependent, testis specific	Name updated	625702	APPROVED
2001-10-23	Pkib	protein kinase inhibitor beta, cAMP dependent, testis specific			Name updated to reflect Human and Mouse nomenclature	68913	APPROVED
2001-04-10	Prkacn2	cAMP-dependent protein kinase (catalytic subunit binding) inhibitor 2			Symbol withdrawn, duplicate entry of Pkib(RGD:3335)	61478	WITHDRAWN

RGD Curation Notes

Note Type	Note	Reference
gene_process	an alternatively spliced isoform displays some inhibitory activity toward cGMP-dependent protein kinase in addition to strong inhibition of cAMP dependent kinase	729532

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