Pigr (polymeric immunoglobulin receptor) - Rat Genome Database

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Gene: Pigr (polymeric immunoglobulin receptor) Rattus norvegicus
Analyze
Symbol: Pigr
Name: polymeric immunoglobulin receptor
RGD ID: 3328
Description: Enables epidermal growth factor receptor binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; detection of chemical stimulus involved in sensory perception of bitter taste; and immunoglobulin transcytosis in epithelial cells mediated by polymeric immunoglobulin receptor. Located in recycling endosome membrane. Orthologous to human PIGR (polymeric immunoglobulin receptor); PARTICIPATES IN interleukin-4 signaling pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: pIgA-R; poly-Ig receptor; polymeric IgA receptor; RNPIGR2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81344,851,001 - 44,879,143 (+)NCBIGRCr8
mRatBN7.21342,298,905 - 42,326,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,298,914 - 42,326,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1344,905,434 - 44,933,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,193,574 - 46,221,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,448,444 - 43,476,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,564,176 - 47,592,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,572,219 - 47,591,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,652,970 - 52,680,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,785,845 - 43,819,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11343,799,887 - 43,817,079 (+)NCBI
Celera1342,648,461 - 42,676,340 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
3,3',4,4'-tetrachlorobiphenyl  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
alendronic acid  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
chrysene  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
dibenzofurans  (ISO)
dichloroacetic acid  (ISO)
diethylstilbestrol  (ISO)
diuron  (EXP)
fumonisin B1  (ISO)
furan  (EXP)
gamma-hexachlorocyclohexane  (EXP)
genistein  (ISO)
inulin  (ISO)
lithium chloride  (ISO)
methylmercury chloride  (ISO)
microcystin-LR  (ISO)
N-nitrosodiethylamine  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
permethrin  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
propiconazole  (ISO)
raloxifene  (EXP)
resveratrol  (ISO)
senecionine  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (EXP)
sulforaphane  (ISO)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trichloroethene  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
valproic acid  (EXP,ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Attenuation of gene expression by a trinucleotide repeat-rich tract from the terminal exon of the rat hepatic polymeric immunoglobulin receptor gene. Aoki T, etal., J Mol Biol 1997 Mar 28;267(2):229-36.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. A 43-base-pair complementary DNA sequence homology and triplet repeat motif among putative polymeric immunoglobulin receptor messenger RNAs in regenerating rat liver. Koch KS, etal., Hepatology 1993 Jul;18(1):226-8.
5. Discordant expression and variable numbers of neighboring GGA- and GAA-rich triplet repeats in the 3' untranslated regions of two groups of messenger RNAs encoded by the rat polymeric immunoglobulin receptor gene. Koch KS, etal., Nucleic Acids Res 1995 Apr 11;23(7):1098-112.
6. Intracellular accumulation of pIgA-R and regulators of transcytotic trafficking in cholestatic rat hepatocytes. Larkin JM, etal., Hepatology 2003 Nov;38(5):1199-209.
7. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. A kinase cascade leading to Rab11-FIP5 controls transcytosis of the polymeric immunoglobulin receptor. Su T, etal., Nat Cell Biol. 2010 Dec;12(12):1143-53. Epub 2010 Oct 31.
14. A tubular endosomal fraction from rat liver: biochemical evidence of receptor sorting by default. Verges M, etal., Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10146-51.
Additional References at PubMed
PMID:1676032   PMID:2776882   PMID:16396499   PMID:16502470   PMID:19056867   PMID:19199708   PMID:20444237   PMID:22022593   PMID:22664934   PMID:23376485   PMID:23382219   PMID:23533145  
PMID:23580065   PMID:24248522   PMID:32012687  


Genomics

Comparative Map Data
Pigr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81344,851,001 - 44,879,143 (+)NCBIGRCr8
mRatBN7.21342,298,905 - 42,326,877 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,298,914 - 42,326,875 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1344,905,434 - 44,933,393 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01346,193,574 - 46,221,520 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01343,448,444 - 43,476,614 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01347,564,176 - 47,592,093 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,572,219 - 47,591,699 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,652,970 - 52,680,757 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,785,845 - 43,819,331 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11343,799,887 - 43,817,079 (+)NCBI
Celera1342,648,461 - 42,676,340 (+)NCBICelera
Cytogenetic Map13q13NCBI
PIGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,928,522 - 206,946,466 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,928,522 - 206,946,466 (-)EnsemblGRCh38hg38GRCh38
GRCh371207,101,867 - 207,119,811 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,168,495 - 205,186,430 (-)NCBINCBI36Build 36hg18NCBI36
Build 341203,490,266 - 203,508,202NCBI
Celera1180,353,371 - 180,371,315 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,799,244 - 177,817,184 (-)NCBIHuRef
CHM1_11208,374,492 - 208,392,432 (-)NCBICHM1_1
T2T-CHM13v2.01206,193,722 - 206,211,683 (-)NCBIT2T-CHM13v2.0
Pigr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,754,421 - 130,779,986 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,754,421 - 130,779,986 (+)EnsemblGRCm39 Ensembl
GRCm381130,826,684 - 130,852,249 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,826,684 - 130,852,249 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,723,261 - 132,748,826 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,654,297 - 132,679,517 (+)NCBIMGSCv36mm8
Celera1133,449,991 - 133,475,626 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
Pigr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,453,080 - 42,474,694 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,456,450 - 42,474,489 (-)NCBIChiLan1.0ChiLan1.0
PIGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,427,196 - 42,446,081 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,393,143 - 42,411,960 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,532,773 - 182,550,662 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,811,152 - 186,829,036 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,811,152 - 186,829,793 (-)Ensemblpanpan1.1panPan2
PIGR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,070,407 - 6,087,605 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,070,407 - 6,087,605 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,633,951 - 5,651,108 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,759,271 - 5,776,498 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,759,271 - 5,776,498 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,693,647 - 5,710,805 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,794,690 - 5,811,843 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,834,667 - 5,851,875 (-)NCBIUU_Cfam_GSD_1.0
Pigr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,450,662 - 68,461,563 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365575,690,944 - 5,700,738 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365575,690,895 - 5,701,822 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl967,553,099 - 67,574,668 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1967,553,094 - 67,574,698 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,889,670 - 73,897,726 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PIGR
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,409,723 - 22,427,894 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,409,999 - 22,427,949 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,079,829 - 23,092,158 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pigr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248074,545,481 - 4,563,357 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248074,545,508 - 4,562,976 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pigr
215 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:31
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000005853
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738036Lnnr4Liver neoplastic nodule remodeling QTL 43.64liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)13142356786Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
61339Bp24Blood pressure QTL 240.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)13599466844807491Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
1300163Cardf1Cardiac cell morphology QTL 14.18aorta morphology trait (VT:0000272)artery lesion measurement (CMO:0000975)131192944945417941Rat
2302275Gluco37Glucose level QTL 373.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)131192944946193066Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
2303032Bp328Blood pressure QTL 328arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134118402245417941Rat

Markers in Region
D13Wox15  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01347,589,437 - 47,589,577NCBIRnor6.0
Celera1342,673,737 - 42,673,880UniSTS
Cytogenetic Map13q13UniSTS
RH132169  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21342,315,452 - 42,315,661 (+)MAPPERmRatBN7.2
Rnor_6.01347,580,717 - 47,580,925NCBIRnor6.0
Rnor_5.01352,669,511 - 52,669,719UniSTSRnor5.0
RGSC_v3.41343,794,366 - 43,794,574UniSTSRGSC3.4
Celera1342,665,010 - 42,665,218UniSTS
RH 3.4 Map13108.7UniSTS
Cytogenetic Map13q13UniSTS
BM382949  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21342,326,650 - 42,326,826 (+)MAPPERmRatBN7.2
Rnor_6.01347,591,867 - 47,592,042NCBIRnor6.0
Rnor_5.01352,680,531 - 52,680,706UniSTSRnor5.0
RGSC_v3.41343,805,064 - 43,805,239UniSTSRGSC3.4
Celera1342,676,114 - 42,676,289UniSTS
RH 3.4 Map13111.1UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 7 7 7
Medium 3 13 13 3 13 13 4 11
Low 1 17 3 16 3 6 6 3 10 10 6
Below cutoff 13 18 16 16 2 3 12 10 19 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_012723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039090372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AH006787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ104960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13235 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L13296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L14004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U02506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U07886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000005853   ⟹   ENSRNOP00000005853
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1342,298,914 - 42,324,282 (+)Ensembl
Rnor_6.0 Ensembl1347,572,275 - 47,590,707 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000087664   ⟹   ENSRNOP00000073662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1347,572,221 - 47,591,699 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000088449   ⟹   ENSRNOP00000073562
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1342,298,914 - 42,326,875 (+)Ensembl
Rnor_6.0 Ensembl1347,572,219 - 47,591,596 (+)Ensembl
RefSeq Acc Id: NM_012723   ⟹   NP_036855
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81344,851,182 - 44,879,143 (+)NCBI
mRatBN7.21342,298,914 - 42,326,877 (+)NCBI
Rnor_6.01347,564,176 - 47,592,093 (+)NCBI
Rnor_5.01352,652,970 - 52,680,757 (+)NCBI
RGSC_v3.41343,785,845 - 43,819,331 (+)RGD
Celera1342,648,461 - 42,676,340 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039090371   ⟹   XP_038946299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81344,851,161 - 44,879,143 (+)NCBI
mRatBN7.21342,298,905 - 42,326,877 (+)NCBI
RefSeq Acc Id: XM_039090372   ⟹   XP_038946300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81344,851,001 - 44,879,143 (+)NCBI
mRatBN7.21342,298,919 - 42,326,877 (+)NCBI
RefSeq Acc Id: XM_063272039   ⟹   XP_063128109
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81344,851,164 - 44,879,143 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_036855   ⟸   NM_012723
- Peptide Label: precursor
- UniProtKB: P15083 (UniProtKB/Swiss-Prot),   F1M7H2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073662   ⟸   ENSRNOT00000087664
RefSeq Acc Id: ENSRNOP00000005853   ⟸   ENSRNOT00000005853
RefSeq Acc Id: ENSRNOP00000073562   ⟸   ENSRNOT00000088449
RefSeq Acc Id: XP_038946299   ⟸   XM_039090371
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5U5 (UniProtKB/TrEMBL),   F1M7H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038946300   ⟸   XM_039090372
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5U5 (UniProtKB/TrEMBL),   F1M7H2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128109   ⟸   XM_063272039
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K5U5 (UniProtKB/TrEMBL)
Protein Domains
Ig-like   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P15083-F1-model_v2 AlphaFold P15083 1-769 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3328 AgrOrtholog
BioCyc Gene G2FUF-18365 BioCyc
Ensembl Genes ENSRNOG00000004405 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000005853.6 UniProtKB/TrEMBL
  ENSRNOT00000088449 ENTREZGENE
  ENSRNOT00000088449.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25046 UniProtKB/Swiss-Prot
NCBI Gene 25046 ENTREZGENE
PANTHER POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PROTEIN CD300H UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pigr PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004405 RatGTEx
SMART IGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K5U5 ENTREZGENE, UniProtKB/TrEMBL
  F1M7H2 ENTREZGENE, UniProtKB/TrEMBL
  P15083 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Pigr  Polymeric immunoglobulin receptor      Symbol and Name status set to approved 70586 APPROVED