Inpp5d (inositol polyphosphate-5-phosphatase D) - Rat Genome Database

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Gene: Inpp5d (inositol polyphosphate-5-phosphatase D) Rattus norvegicus
Analyze
Symbol: Inpp5d
Name: inositol polyphosphate-5-phosphatase D
RGD ID: 2914
Description: Enables inositol-4,5-bisphosphate 5-phosphatase activity. Predicted to be involved in several processes, including negative regulation of bone resorption; negative regulation of natural killer cell mediated cytotoxicity; and regulation of leukocyte differentiation. Predicted to act upstream of or within several processes, including determination of adult lifespan; negative regulation of B cell proliferation; and regulation of hemopoiesis. Located in actin filament and cortical cytoskeleton. Orthologous to human INPP5D (inositol polyphosphate-5-phosphatase D); PARTICIPATES IN erythropoietin signaling pathway; Fc epsilon receptor mediated signaling pathway; granulocyte-macrophage colony-stimulating factor signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: inositol polyphosphate-5-phosphatase; Inositol polyphosphate-5-phosphatase 145 kDa; Inositol polyphosphate-5-phosphatase, 145 kDa; phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1; phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase 1; phosphatidylinositol-4,5-bisphosphate 5-phosphatase; SH2 domain-containing inositol 5'-phosphatase 1; SH2 domain-containing inositol phosphatase 1; SH2 domain-containing inositol-5'-phosphatase 1; SHIP-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,735,533 - 95,840,584 (+)NCBIGRCr8
mRatBN7.2988,287,680 - 88,392,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,287,677 - 88,392,746 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx996,712,335 - 96,817,268 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,848,406 - 101,953,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,215,907 - 100,320,982 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,745,220 - 94,850,778 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,745,217 - 94,850,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0994,464,380 - 94,569,984 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,576,742 - 86,682,240 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1986,760,159 - 86,865,657 (+)NCBI
Celera985,697,060 - 85,801,952 (+)NCBICelera
Cytogenetic Map9q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
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Original Reference(s)
Inpp5dRatsevere combined immunodeficiency  ISOINPP5D (Homo sapiens)8554872ClinVar Annotator: match by term: Severe combined immunodeficiency diseaseClinVarPMID:25741868
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Original Reference(s)
Inpp5dRatAlzheimer's disease  ISOINPP5D (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30320580
Inpp5dRatExperimental Liver Cirrhosis  ISOINPP5D (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Inpp5dRatReperfusion Injury  ISOINPP5D (Homo sapiens)11554173CTD Direct Evidence: therapeuticCTDPMID:25780291
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Original Reference(s)
Inpp5dRatPaget's disease of bone  ISSInpp5d (Mus musculus)13592920OMIM:167250 more ...MouseDO 
Inpp5dRatsystemic lupus erythematosus  ISSInpp5d (Mus musculus)13592920OMIM:152700 more ...MouseDO 

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Original Reference(s)
Inpp5dRat1,2-dimethylhydrazine increases expressionISOInpp5d (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of INPP5D mRNACTDPMID:22206623
Inpp5dRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of INPP5D mRNACTDPMID:25380136
Inpp5dRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of INPP5D mRNACTDPMID:12655037
Inpp5dRat17beta-estradiol multiple interactionsISOINPP5D (Homo sapiens)6480464[Estradiol co-treated with TGFB1 protein] results in decreased expression of INPP5D mRNACTDPMID:30165855
Inpp5dRat17beta-estradiol multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of INPP5D mRNACTDPMID:32741896
Inpp5dRat17beta-estradiol 3-benzoate multiple interactionsEXP 6480464[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of INPP5D mRNACTDPMID:32741896
Inpp5dRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of INPP5D mRNACTDPMID:22298810
Inpp5dRat2,3,7,8-tetrachlorodibenzodioxine increases expressionEXP 6480464Tetrachlorodibenzodioxin results in increased expression of INPP5D mRNACTDPMID:33387578
Inpp5dRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of INPP5D mRNACTDPMID:34747641
Inpp5dRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOInpp5d (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of INPP5D mRNACTDPMID:26377647 and PMID:28922406
Inpp5dRat3,4-methylenedioxymethamphetamine increases expressionISOInpp5d (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of INPP5D mRNACTDPMID:26251327
Inpp5dRat4,4'-sulfonyldiphenol decreases expressionISOInpp5d (Mus musculus)6480464bisphenol S results in decreased expression of INPP5D mRNACTDPMID:39298647
Inpp5dRat4-hydroxyphenyl retinamide decreases expressionISOInpp5d (Mus musculus)6480464Fenretinide results in decreased expression of INPP5D mRNACTDPMID:28973697
Inpp5dRat5-aza-2'-deoxycytidine affects expressionISOINPP5D (Homo sapiens)6480464Decitabine affects the expression of INPP5D mRNACTDPMID:23300844
Inpp5dRat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of INPP5D mRNACTDPMID:30047161
Inpp5dRatacetamide increases expressionEXP 6480464acetamide results in increased expression of INPP5D mRNACTDPMID:31881176
Inpp5dRatacrylamide decreases expressionISOINPP5D (Homo sapiens)6480464Acrylamide results in decreased expression of INPP5D mRNACTDPMID:32763439
Inpp5dRatactinomycin D increases expressionISOINPP5D (Homo sapiens)6480464Dactinomycin results in increased expression of INPP5D mRNACTDPMID:38460933
Inpp5dRatactinomycin D multiple interactionsISOINPP5D (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased expression of INPP5D mRNACTDPMID:38460933
Inpp5dRataflatoxin B1 increases methylationISOINPP5D (Homo sapiens)6480464Aflatoxin B1 results in increased methylation of INPP5D intronCTDPMID:30157460

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Biological Process
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Original Reference(s)
Inpp5dRatapoptotic process involved_inIEAUniProtKB-KW:KW-00531600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatbiological_process  ND 159840708/2009: no relevant rat dataRGD 
Inpp5dRatdetermination of adult lifespan acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:9620849RGDPMID:9620849
Inpp5dRatdetermination of adult lifespan acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatimmune system process involved_inIEAUniProtKB-KW:KW-03911600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatimmunoglobulin mediated immune response acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:10704460RGDPMID:10704460
Inpp5dRatimmunoglobulin mediated immune response acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatintracellular signal transduction acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:10704460RGDPMID:10704460
Inpp5dRatintracellular signal transduction acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatlipid metabolic process involved_inIEAUniProtKB-KW:KW-04431600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatnegative regulation of B cell activation acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:10704460RGDPMID:10704460
Inpp5dRatnegative regulation of B cell activation acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatnegative regulation of B cell proliferation acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatnegative regulation of B cell proliferation acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:10704460RGDPMID:10704460
Inpp5dRatnegative regulation of bone resorption involved_inIBAMGI:107357 and PANTHER:PTN0029176281600115GO_REF:0000033GO_CentralGO_REF:0000033
Inpp5dRatnegative regulation of bone resorption acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatnegative regulation of bone resorption acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:12161749RGDPMID:12161749
Inpp5dRatnegative regulation of granulocyte differentiation acts_upstream_of_or_withinIEAUniProtKB:Q9ES52 and ensembl:ENSMUSP000001279411600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatnegative regulation of granulocyte differentiation acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:9620849RGDPMID:9620849
Inpp5dRatnegative regulation of immune response acts_upstream_of_or_withinISOInpp5d (Mus musculus)1624291MGI:2386884 PMID:10704460RGDPMID:10704460
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Cellular Component
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Original Reference(s)
Inpp5dRatactin filament  IDA 2312435 RGD 
Inpp5dRatcortical cytoskeleton  IDA 2312435 RGD 
Inpp5dRatcytoplasm is_active_inISOINPP5D (Homo sapiens)1624291 PMID:10822173RGDPMID:10822173
Inpp5dRatcytoplasm is_active_inIEAUniProtKB:Q92835 and ensembl:ENSP000004053381600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatcytoplasm located_inIEAUniProtKB-KW:KW-09631600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatcytoplasm located_inIEAUniProtKB-SubCell:SL-00861600115GO_REF:0000044UniProtGO_REF:0000044
Inpp5dRatcytoskeleton located_inIEAUniProtKB-SubCell:SL-00901600115GO_REF:0000044UniProtGO_REF:0000044
Inpp5dRatcytoskeleton located_inIEAUniProtKB-KW:KW-02061600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatcytosol located_inISOINPP5D (Homo sapiens) more ...1624291 RGDGO_REF:0000052
Inpp5dRatcytosol is_active_inIBAPANTHER:PTN002917628 and UniProtKB:Q928351600115GO_REF:0000033GO_CentralGO_REF:0000033
Inpp5dRatcytosol located_inIEAUniProtKB:Q92835 and ensembl:ENSP000004053381600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Inpp5dRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatmembrane raft located_inIEAUniProtKB-SubCell:SL-03701600115GO_REF:0000044UniProtGO_REF:0000044
Inpp5dRatplasma membrane located_inIEAUniProtKB-SubCell:SL-00391600115GO_REF:0000044UniProtGO_REF:0000044
Inpp5dRatplasma membrane located_inIEAUniProtKB-KW:KW-10031600115GO_REF:0000043UniProtGO_REF:0000043
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Molecular Function
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Original Reference(s)
Inpp5dRathydrolase activity enablesIEAUniProtKB-KW:KW-03781600115GO_REF:0000043UniProtGO_REF:0000043
Inpp5dRatinositol phosphate phosphatase activity enablesIEAARBA:ARBA000271681600115GO_REF:0000117UniProtGO_REF:0000117
Inpp5dRatinositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity enablesIEARHEA:113921600115GO_REF:0000116RHEAGO_REF:0000116
Inpp5dRatinositol-4,5-bisphosphate 5-phosphatase activity  IDA 633160 RGD 
Inpp5dRatinositol-polyphosphate 5-phosphatase activity enablesISOINPP5D (Homo sapiens)1624291 PMID:10764818RGDPMID:10764818
Inpp5dRatinositol-polyphosphate 5-phosphatase activity enablesIEAEC:3.1.3.561600115GO_REF:0000003UniProtGO_REF:0000003
Inpp5dRatinositol-polyphosphate 5-phosphatase activity enablesIEAUniProtKB:Q92835 and ensembl:ENSP000004053381600115GO_REF:0000107EnsemblGO_REF:0000107
Inpp5dRatphosphatase activity enablesIEAInterPro:IPR0003001600115GO_REF:0000002InterProGO_REF:0000002
Inpp5dRatphosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity enablesIEARHEA:255281600115GO_REF:0000116RHEAGO_REF:0000116
Inpp5dRatphosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity enablesIEAEC:3.1.3.861600115GO_REF:0000003UniProtGO_REF:0000003
Inpp5dRatphosphatidylinositol-4,5-bisphosphate 5-phosphatase activity enablesIEAEC:3.1.3.361600115GO_REF:0000003UniProtGO_REF:0000003
Inpp5dRatphosphatidylinositol-4,5-bisphosphate 5-phosphatase activity enablesIEARHEA:227641600115GO_REF:0000116RHEAGO_REF:0000116
Inpp5dRatprotein binding  IPIFlna (Rattus norvegicus)2312435 RGD 
Inpp5dRatprotein binding  IPIFcgr2b (Mus musculus)2312435 RGD 
Inpp5dRatprotein binding enablesISOINPP5D (Homo sapiens)1624291UniProtKB:O75525 more ...RGDPMID:10382761 more ...
Inpp5dRatprotein binding enablesISOINPP5D (Homo sapiens) and UniProtKB:Q92835-21624291UniProtKB:A8MQ03 more ...RGDPMID:32296183
Inpp5dRatprotein binding enablesISOInpp5d (Mus musculus) and PR:Q9ES52-11624291UniProtKB:P23727 and PMID:10068665RGDPMID:10068665
Inpp5dRatprotein binding enablesIPIUniProtKB:Q15642-113432325PMID:26751515IntAct 
Inpp5dRatprotein binding enablesIPIUniProtKB:Q96RU313432325PMID:26751515IntAct 
Inpp5dRatprotein binding enablesISOInpp5d (Mus musculus)1624291PR:P08101 more ...RGDPMID:11031258 more ...
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RGD Manual Annotations


  
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Original Reference(s)
Inpp5dRatphosphatidylinositol 3-kinase-Akt signaling pathway   ISOINPP5D (Homo sapiens)2302068 RGD 

Imported Annotations - SMPDB

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Original Reference(s)
Inpp5dRatFc epsilon receptor mediated signaling pathway  ISOINPP5D (Homo sapiens)10402751 SMPDBSMP:00358
Inpp5dRatphosphoinositide metabolic pathway  ISOINPP5D (Homo sapiens)10402751 SMPDBSMP:00463

Imported Annotations - KEGG (archival)

Object Symbol
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Original Reference(s)
Inpp5dRatB cell receptor signaling pathway  IEA 6907045 KEGGrno:04662
Inpp5dRatFc epsilon receptor mediated signaling pathway  IEA 6907045 KEGGrno:04664
Inpp5dRatFc gamma receptor mediated signaling pathway  IEA 6907045 KEGGrno:04666
Inpp5dRatinsulin signaling pathway   IEA 6907045 KEGGrno:04910
Inpp5dRatphosphatidylinositol 3-kinase signaling pathway  IEA 6907045 KEGGrno:04070

Imported Annotations - PID (archival)

External Pathway Database Links

KEGG Pathway Insulin signaling pathway


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Reference Title
Reference Citation
1. Metabolic switching of PI3K-dependent lipid signals. Downes CP, etal., Biochem Soc Trans. 2007 Apr;35(Pt 2):188-92.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Dynamic interactions of Fc gamma receptor IIB with filamin-bound SHIP1 amplify filamentous actin-dependent negative regulation of Fc epsilon receptor I signaling. Lesourne R, etal., J Immunol. 2005 Feb 1;174(3):1365-73.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. GOA pipeline RGD automated data pipeline
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. Comprehensive gene review and curation RGD comprehensive gene curation
12. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
13. Frequency and amplitude control of cortical oscillations by phosphoinositide waves. Xiong D, etal., Nat Chem Biol. 2016 Mar;12(3):159-66. doi: 10.1038/nchembio.2000. Epub 2016 Jan 11.
14. SH2 domain-containing inositol polyphosphate 5'-phosphatase is the main mediator of the inhibitory action of the mast cell function-associated antigen. Xu R, etal., J Immunol 2001 Dec 1;167(11):6394-402.
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PMID:8643691   PMID:8654924   PMID:8890215   PMID:9620849   PMID:10704460   PMID:11970986   PMID:12008030   PMID:12161749  



Inpp5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8995,735,533 - 95,840,584 (+)NCBIGRCr8
mRatBN7.2988,287,680 - 88,392,748 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl988,287,677 - 88,392,746 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx996,712,335 - 96,817,268 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09101,848,406 - 101,953,467 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09100,215,907 - 100,320,982 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0994,745,220 - 94,850,778 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,745,217 - 94,850,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0994,464,380 - 94,569,984 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,576,742 - 86,682,240 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1986,760,159 - 86,865,657 (+)NCBI
Celera985,697,060 - 85,801,952 (+)NCBICelera
Cytogenetic Map9q35NCBI
INPP5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382233,060,342 - 233,207,903 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2233,059,967 - 233,207,903 (+)EnsemblGRCh38hg38GRCh38
GRCh372233,925,052 - 234,116,549 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,633,280 - 233,703,602 (+)NCBINCBI36Build 36hg18NCBI36
Build 362233,734,415 - 233,781,288 (+)NCBINCBI36Build 36hg18NCBI36
Build 342233,851,680 - 233,898,543NCBI
Celera2227,689,229 - 227,838,082 (+)NCBICelera
Cytogenetic Map2q37.1NCBI
HuRef2225,771,888 - 225,851,574 (+)NCBIHuRef
HuRef2225,855,510 - 225,917,438 (+)NCBIHuRef
CHM1_12233,930,801 - 234,001,504 (+)NCBICHM1_1
CHM1_12234,060,594 - 234,122,681 (+)NCBICHM1_1
T2T-CHM13v2.02233,547,692 - 233,695,995 (+)NCBIT2T-CHM13v2.0
Inpp5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,548,034 - 87,648,232 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl187,548,034 - 87,648,229 (+)EnsemblGRCm39 Ensembl
GRCm38187,620,312 - 87,720,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,620,312 - 87,720,507 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,516,887 - 89,617,083 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36189,451,550 - 89,551,673 (+)NCBIMGSCv36mm8
Celera190,584,657 - 90,684,696 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.44NCBI
Inpp5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554532,938,659 - 3,037,211 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554532,938,659 - 3,037,211 (-)NCBIChiLan1.0ChiLan1.0
INPP5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213135,661,459 - 135,810,426 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B135,676,418 - 135,825,387 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B120,287,606 - 120,436,526 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B239,201,762 - 239,350,190 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B239,201,762 - 239,350,190 (+)Ensemblpanpan1.1panPan2
INPP5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,612,146 - 44,731,347 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,611,523 - 44,730,200 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2545,107,368 - 45,226,924 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02544,871,607 - 44,991,203 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2544,871,613 - 44,991,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12544,796,019 - 44,915,638 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02544,642,212 - 44,761,876 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02544,797,422 - 44,916,878 (+)NCBIUU_Cfam_GSD_1.0
Inpp5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,769,492 - 186,893,121 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365254,048,492 - 4,154,618 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365254,046,609 - 4,154,715 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INPP5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,501,092 - 133,626,644 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115133,501,067 - 133,626,647 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,601,906 - 147,670,776 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INPP5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110119,093,160 - 119,244,128 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10119,093,781 - 119,244,123 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604080,260,665 - 80,414,305 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Inpp5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248435,685,502 - 5,773,469 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248435,685,409 - 5,774,459 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in Inpp5d
696 total Variants

Predicted Target Of
Summary Value
Count of predictions:156
Count of miRNA genes:118
Interacting mature miRNAs:138
Transcripts:ENSRNOT00000051338
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 21 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
631656Bp108Blood pressure QTL 1085.970.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)94859825193598251Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)93696235992058970Rat
11353957Bmd92Bone mineral density QTL 920.01tibia mineral mass (VT:1000283)volumetric bone mineral density (CMO:0001553)94611419991114199Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
2303178Bp334Blood pressure QTL 3343.70.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)97927151191616855Rat
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)93696235995410867Rat

1 to 10 of 21 rows
D9Rat67  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2988,387,943 - 88,388,152 (+)MAPPERmRatBN7.2
Rnor_6.0994,845,971 - 94,846,179NCBIRnor6.0
Rnor_5.0994,565,182 - 94,565,390UniSTSRnor5.0
RGSC_v3.4986,677,437 - 86,677,646RGDRGSC3.4
RGSC_v3.4986,677,438 - 86,677,646UniSTSRGSC3.4
RGSC_v3.1986,860,856 - 86,861,065RGD
Celera985,797,206 - 85,797,414UniSTS
SHRSP x BN Map956.8299UniSTS
SHRSP x BN Map956.8299RGD
FHH x ACI Map959.98RGD
Cytogenetic Map9q35UniSTS
D9Got236  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2988,317,849 - 88,318,080 (+)MAPPERmRatBN7.2
Rnor_6.0994,775,679 - 94,775,909NCBIRnor6.0
Rnor_5.0994,494,839 - 94,495,069UniSTSRnor5.0
RGSC_v3.4986,606,909 - 86,607,139UniSTSRGSC3.4
Celera985,727,224 - 85,727,454UniSTS
Cytogenetic Map9q35UniSTS
RH133650  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2988,392,559 - 88,392,741 (+)MAPPERmRatBN7.2
Rnor_6.0994,850,585 - 94,850,766NCBIRnor6.0
Rnor_5.0994,569,796 - 94,569,977UniSTSRnor5.0
RGSC_v3.4986,682,052 - 86,682,233UniSTSRGSC3.4
Celera985,801,764 - 85,801,945UniSTS
RH 3.4 Map4985.9UniSTS
Cytogenetic Map9q35UniSTS
RH144552  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2988,304,395 - 88,304,502 (+)MAPPERmRatBN7.2
Rnor_6.0994,762,329 - 94,762,435NCBIRnor6.0
Rnor_5.0994,481,489 - 94,481,595UniSTSRnor5.0
RGSC_v3.4986,593,456 - 86,593,562UniSTSRGSC3.4
Celera985,713,771 - 85,713,877UniSTS
Cytogenetic Map9q35UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000051338   ⟹   ENSRNOP00000040111
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl988,287,677 - 88,392,746 (+)Ensembl
Rnor_6.0 Ensembl994,745,217 - 94,850,771 (+)Ensembl
RefSeq Acc Id: NM_019311   ⟹   NP_062184
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8995,735,533 - 95,840,584 (+)NCBI
mRatBN7.2988,287,680 - 88,392,748 (+)NCBI
Rnor_6.0994,745,220 - 94,850,773 (+)NCBI
Rnor_5.0994,464,380 - 94,569,984 (+)NCBI
RGSC_v3.4986,576,742 - 86,682,240 (+)RGD
Celera985,697,060 - 85,801,952 (+)RGD
Sequence:
RefSeq Acc Id: NP_062184   ⟸   NM_019311
- UniProtKB: P97573 (UniProtKB/Swiss-Prot),   F1M981 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000040111   ⟸   ENSRNOT00000051338
Name Modeler Protein Id AA Range Protein Structure
AF-P97573-F1-model_v2 AlphaFold P97573 1-1190 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13696839
Promoter ID:EPDNEW_R7363
Type:initiation region
Name:Inpp5d_1
Description:inositol polyphosphate-5-phosphatase D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0994,745,292 - 94,745,352EPDNEW


1 to 36 of 36 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-26836 BioCyc
BioCyc Pathway PWY-6368 [3-phosphoinositide degradation] BioCyc
BioCyc Pathway Image PWY-6368 BioCyc
Ensembl Genes ENSRNOG00000017020 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000051338 ENTREZGENE
Gene3D-CATH 3.30.505.10 UniProtKB/Swiss-Prot
  3.60.10.10 UniProtKB/Swiss-Prot
InterPro Endo/exonu/phosph_ase_sf UniProtKB/Swiss-Prot
  IPPc UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
  SH2_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:54259 UniProtKB/Swiss-Prot
NCBI Gene 54259 ENTREZGENE
PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 5-PHOSPHATASE 1 UniProtKB/Swiss-Prot
  SH2 DOMAIN-CONTAINING PROTEIN UniProtKB/Swiss-Prot
Pfam Exo_endo_phos2 UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
PhenoGen Inpp5d PhenoGen
PRINTS SH2DOMAIN UniProtKB/Swiss-Prot
PROSITE SH2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000017020 RatGTEx
SMART IPPc UniProtKB/Swiss-Prot
  SH2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF55550 UniProtKB/Swiss-Prot
  SSF56219 UniProtKB/Swiss-Prot
TIGR TC221321
UniProt A6JWN9_RAT UniProtKB/TrEMBL
  A6JWP0_RAT UniProtKB/TrEMBL
  A6JWP1_RAT UniProtKB/TrEMBL
  A6JWP2_RAT UniProtKB/TrEMBL
  A6JWP3_RAT UniProtKB/TrEMBL
  A6JWP4_RAT UniProtKB/TrEMBL
  A6JWP5_RAT UniProtKB/TrEMBL
  A6JWP6_RAT UniProtKB/TrEMBL
  F1M981 ENTREZGENE, UniProtKB/TrEMBL
  P97573 ENTREZGENE, UniProtKB/Swiss-Prot
1 to 36 of 36 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-11-06 Inpp5d  inositol polyphosphate-5-phosphatase D    Inositol polyphosphate-5-phosphatase, 145 kDa  Name updated 625702 APPROVED
2001-05-08 Inpp5d  Inositol polyphosphate-5-phosphatase      Name withdrawn, does not match Human and Mouse nomenclature 62408 WITHDRAWN
2001-05-08 Inpp5d  Inositol polyphosphate-5-phosphatase, 145 kDa      Name changed to reflect Human and Mouse nomenclature 62408 APPROVED