Igf2r (insulin-like growth factor 2 receptor) - Rat Genome Database

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Gene: Igf2r (insulin-like growth factor 2 receptor) Rattus norvegicus
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Symbol: Igf2r
Name: insulin-like growth factor 2 receptor
RGD ID: 2871
Description: Enables several functions, including G-protein alpha-subunit binding activity; insulin-like growth factor II binding activity; and retinoic acid binding activity. Involved in several processes, including animal organ regeneration; response to retinoic acid; and response to tetrachloromethane. Located in several cellular components, including late endosome; perinuclear region of cytoplasm; and trans-Golgi network. Part of clathrin coat. Used to study lung adenocarcinoma. Biomarker of amyotrophic lateral sclerosis. Human ortholog(s) of this gene implicated in diabetes mellitus (multiple); hepatocellular carcinoma; in situ carcinoma (multiple); and nephroblastoma. Orthologous to human IGF2R (insulin like growth factor 2 receptor); PARTICIPATES IN renin-angiotensin cascade pathway; INTERACTS WITH 1,2,4-trimethylbenzene; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cation-independent mannose-6-phosphate receptor; IGF-IIR; Igfr2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,526,878 - 50,615,265 (+)NCBIGRCr8
mRatBN7.2147,979,109 - 48,067,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,979,109 - 48,067,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,670,745 - 48,759,134 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,656,245 - 54,744,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,746,270 - 48,834,659 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,176,095 - 48,264,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,176,106 - 48,264,477 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,488,767 - 51,577,141 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,253,273 - 42,341,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,256,217 - 42,344,589 (+)NCBI
Celera143,778,518 - 43,867,238 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


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Original Reference(s)
Igf2rRatamyotrophic lateral sclerosis  IEP 2311519protein:increased expression:spinal cord and astrocyteRGD 
Igf2rRatbreast carcinoma  ISOIGF2R (Homo sapiens)14985218protein:increased expression:serum and urine:RGD 
Igf2rRatbreast carcinoma in situ  ISOIGF2R (Homo sapiens)2311631DNA:loss of heterozygosityRGD 
Igf2rRatcolon carcinoma  ISOIGF2R (Homo sapiens)14985218protein:increased expression:serum:RGD 
Igf2rRatExperimental Diabetes Mellitus  ISOIgf2r (Mus musculus)2311502protein:increased expression:oviductRGD 
Igf2rRatExperimental Liver Neoplasms  IAGP 2311623 RGD 
Igf2rRatExperimental Liver Neoplasms  IAGP 2311630 RGD 
Igf2rRatFetal Growth Retardation  IEP 14985247mRNA:increased expresssion:fetus:RGD 
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)1624323DNA:mutation:G1449V (human)RGD 
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)14985225associated with hepatitis B virus and mRNA:decreased expression:liver:RGD 
Igf2rRathepatocellular carcinoma disease_progressionISOIGF2R (Homo sapiens)14985219DNA:loss of heterozygosity:liverRGD 
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)14985222 RGD 
Igf2rRathepatocellular carcinoma no_associationISOIGF2R (Homo sapiens)14985220DNA:loss of heterozygosity and mutations:liver:RGD 
Igf2rRathepatocellular carcinoma treatmentISOIGF2R (Homo sapiens)14985221 RGD 
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)14985218protein:increased expression:serum:RGD 
Igf2rRatin situ carcinoma  ISOIGF2R (Homo sapiens)2311631associated with Breast Neoplasms more ...RGD 
Igf2rRatlung adenocarcinoma  IAGP 1298968mRNA:deletions: :c.3698_4902del more ...RGD 
Igf2rRatmultiple myeloma  ISOIGF2R (Homo sapiens)14985218protein:increased expression:serum and urine:RGD 
Igf2rRatnephroblastoma  ISOIGF2R (Homo sapiens)7242956 RGD 
Igf2rRatnon-Hodgkin lymphoma  ISOIGF2R (Homo sapiens)14985218protein:increased expression:serum:RGD 
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Igf2rRat3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: 3-methylglutaconic aciduria with deafness more ...ClinVarPMID:15220921 more ...
Igf2rRatBeckwith-Wiedemann syndrome  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Beckwith-Wiedemann syndromeClinVarPMID:25741868
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Hepatocellular carcinomaClinVarPMID:25741868 and PMID:9722161
Igf2rRatmyoepithelioma  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Myoepithelial tumorClinVar 
Igf2rRatprimary ovarian insufficiency  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Premature ovarian failureClinVarPMID:25741868
Igf2rRatprostate cancer  ISOIGF2R (Homo sapiens)8554872ClinVar Annotator: match by term: Malignant tumor of prostateClinVarPMID:23265383
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Igf2rRatAlzheimer's disease  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15750215
Igf2rRatcongenital diaphragmatic hernia  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20620343 and PMID:21433279
Igf2rRatDiabetic Cardiomyopathies  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36462176
Igf2rRatendomyocardial fibrosis  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30450786 and PMID:36462176
Igf2rRatExperimental Liver Cirrhosis  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136
Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:15057872
Igf2rRatLewy body dementia  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19276553
Igf2rRatlung disease  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:20620343 and PMID:21433279
Igf2rRatParkinson's disease  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:19276553
Igf2rRatProstatic Neoplasms  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:29610475
Igf2rRatVentricular Dysfunction  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:30450786
Igf2rRatVentricular Dysfunction, Left  ISOIGF2R (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:36462176
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Igf2rRathepatocellular carcinoma  ISOIGF2R (Homo sapiens)7240710 OMIM 

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Igf2rRat(1->4)-beta-D-glucan multiple interactionsISOIgf2r (Mus musculus)6480464[perfluorooctane sulfonic acid co-treated with Cellulose] results in increased expression of IGF2R mRNACTDPMID:36331819
Igf2rRat1,2,4-trimethylbenzene decreases expressionEXP 6480464pseudocumene results in decreased expression of IGF2R proteinCTDPMID:17337753
Igf2rRat1,2-dimethylhydrazine multiple interactionsISOIgf2r (Mus musculus)6480464[1 more ...CTDPMID:22206623 and PMID:26388957
Igf2rRat1,2-dimethylhydrazine decreases expressionISOIgf2r (Mus musculus)64804641 and 2-Dimethylhydrazine results in decreased expression of IGF2R mRNACTDPMID:22206623
Igf2rRat1-naphthyl isothiocyanate increases expressionEXP 64804641-Naphthylisothiocyanate results in increased expression of IGF2R mRNACTDPMID:25380136
Igf2rRat17alpha-ethynylestradiol multiple interactionsISOIgf2r (Mus musculus)6480464[Ibuprofen co-treated with hydroxyibuprofen co-treated with Diclofenac co-treated with Ethinyl Estradiol] results in increased expression of IGF2R mRNA more ...CTDPMID:17942748 more ...
Igf2rRat17beta-estradiol multiple interactionsEXP 6480464[bisphenol A co-treated with Estradiol] results in decreased expression of IGF2R mRNACTDPMID:26496021
Igf2rRat2,2',4,4'-Tetrabromodiphenyl ether decreases expressionISOIGF2R (Homo sapiens)64804642 more ...CTDPMID:31675489
Igf2rRat2,3',4,4',5-Pentachlorobiphenyl decreases methylationISOIgf2r (Mus musculus)64804642 more ...CTDPMID:31388691
Igf2rRat2,3',4,4',5-Pentachlorobiphenyl increases expressionISOIgf2r (Mus musculus)64804642 more ...CTDPMID:31388691
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOIgf2r (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of IGF2R mRNACTDPMID:17942748
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of IGF2R mRNACTDPMID:33387578
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISOIgf2r (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of IGF2R mRNACTDPMID:19770486 and PMID:23142538
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine increases methylationISOIgf2r (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased methylation of IGF2R geneCTDPMID:23142538
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOIgf2r (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of IGF2R mRNACTDPMID:23142538 and PMID:33956508
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOIgf2r (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of IGF2R mRNACTDPMID:21570461
Igf2rRat2,3,7,8-tetrachlorodibenzodioxine affects expressionEXP 6480464Tetrachlorodibenzodioxin affects the expression of IGF2R mRNACTDPMID:22298810
Igf2rRat2,4,6-tribromophenol increases expressionISOIGF2R (Homo sapiens)64804642 more ...CTDPMID:31675489
Igf2rRat2-methylcholine affects expressionISOIGF2R (Homo sapiens)6480464beta-methylcholine affects the expression of IGF2R mRNACTDPMID:21179406
Igf2rRat3,3',4,4',5-pentachlorobiphenyl decreases expressionEXP 64804643 more ...CTDPMID:23196670

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Biological Process
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Original Reference(s)
Igf2rRatanimal organ regeneration  IEP 1298966 RGD 
Igf2rRatG protein-coupled receptor signaling pathway  IMP 2311517 RGD 
Igf2rRatinsulin-like growth factor receptor signaling pathway involved_inIEAGO:00050101600115GO_REF:0000108GOCGO_REF:0000108
Igf2rRatliver development  IDA 2311626 RGD 
Igf2rRatlysosomal transport involved_inIBAFB:FBgn0051072 and PANTHER:PTN0008249001600115GO_REF:0000033GO_CentralGO_REF:0000033
Igf2rRatlysosomal transport involved_inIEAInterPro:IPR0004791600115GO_REF:0000002InterProGO_REF:0000002
Igf2rRatpositive regulation by host of viral process involved_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatpositive regulation of apoptotic process  IMP 2311517 RGD 
Igf2rRatpost-embryonic development  IEP 2311621 RGD 
Igf2rRatregulation of apoptotic process  IMP 1624325 RGD 
Igf2rRatresponse to retinoic acid  IDA 2311629 RGD 
Igf2rRatresponse to tetrachloromethane  IEP 14985245 RGD 
Igf2rRatspermatogenesis  IEP 2311627 RGD 
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Cellular Component
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Igf2rRatcell surface located_inISOIGF2R (Homo sapiens)1624291 PMID:10900005RGDPMID:10900005
Igf2rRatcell surface located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatclathrin coat  IDA 2303173 RGD 
Igf2rRatearly endosome located_inISOIGF2R (Homo sapiens)1624291 PMID:17959629RGDPMID:17959629
Igf2rRatearly endosome located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatendocytic vesicle located_inISOIGF2R (Homo sapiens)1624291 PMID:10900005RGDPMID:10900005
Igf2rRatendocytic vesicle located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatendomembrane system located_inIEAARBA:ARBA000289531600115GO_REF:0000117UniProtGO_REF:0000117
Igf2rRatendosome  IDA 2311624 RGD 
Igf2rRatendosome located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatendosome located_inIEAUniProtKB-KW:KW-09671600115GO_REF:0000043UniProtGO_REF:0000043
Igf2rRatendosome located_inISOIGF2R (Homo sapiens)1624291 PMID:15078902RGDPMID:15078902
Igf2rRatendosome membrane located_inISOIGF2R (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Igf2rRatendosome membrane located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatendosome membrane located_inIEAUniProtKB-SubCell:SL-01001600115GO_REF:0000044UniProtGO_REF:0000044
Igf2rRatextracellular space  IDA 2311628 RGD 
Igf2rRatGolgi apparatus located_inIEAUniProtKB-KW:KW-03331600115GO_REF:0000043UniProtGO_REF:0000043
Igf2rRatGolgi apparatus located_inIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatGolgi apparatus located_inISOIGF2R (Homo sapiens)1624291 PMID:18817523RGDGO_REF:0000052 and PMID:18817523
Igf2rRatGolgi membrane located_inIEAUniProtKB-SubCell:SL-01341600115GO_REF:0000044UniProtGO_REF:0000044
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Molecular Function
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Igf2rRatD-mannose binding enablesISOIgf2r (Mus musculus)1624291 PMID:2963825RGDPMID:2963825
Igf2rRatD-mannose binding enablesIEAUniProtKB:Q07113 and ensembl:ENSMUSP000000245991600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatD-mannose binding enablesIEAInterPro:IPR0004791600115GO_REF:0000002InterProGO_REF:0000002
Igf2rRatenzyme binding  IDA 1581738 RGD 
Igf2rRatG-protein alpha-subunit binding  IDA 1624326 RGD 
Igf2rRatidentical protein binding enablesISOIGF2R (Homo sapiens)1624291UniProtKB:P11717 and PMID:22681933RGDPMID:22681933
Igf2rRatidentical protein binding enablesIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatinsulin-like growth factor binding enablesIBAMGI:96435 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Igf2rRatinsulin-like growth factor binding enablesIEAUniProtKB:Q07113 and ensembl:ENSMUSP000000245991600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatinsulin-like growth factor binding enablesISOIgf2r (Mus musculus)1624291PR:P09535 PMID:14566968RGDPMID:14566968
Igf2rRatinsulin-like growth factor II binding  IDA 1624326 RGD 
Igf2rRatinsulin-like growth factor receptor activity  TAS 1298967 RGD 
Igf2rRatphosphoprotein binding enablesISOIGF2R (Homo sapiens)1624291 PMID:10900005RGDPMID:10900005
Igf2rRatphosphoprotein binding enablesIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatprotein binding enablesISOIgf2r (Mus musculus)1624291PR:P04095 more ...RGDPMID:2963825 and PMID:37863414
Igf2rRatprotein binding enablesISOIGF2R (Homo sapiens)1624291UniProtKB:P01344 more ...RGDPMID:10900005 more ...
Igf2rRatretinoic acid binding  IDA 2311628 RGD 
Igf2rRatretromer complex binding enablesISOIGF2R (Homo sapiens)1624291 PMID:18817523RGDPMID:18817523
Igf2rRatretromer complex binding enablesIEAUniProtKB:P11717 and ensembl:ENSP000003494371600115GO_REF:0000107EnsemblGO_REF:0000107
Igf2rRatsignaling receptor activity enablesIEAInterPro:IPR0004791600115GO_REF:0000002InterProGO_REF:0000002
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RGD Manual Annotations


  
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Igf2rRatrenin-angiotensin cascade pathway   IDA 1581738 RGD 
Igf2rRatrenin-angiotensin cascade pathway   TAS 1581739 RGD 

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#
Reference Title
Reference Citation
1. Changes in distribution of phosphomannosyl receptors during maturation of rat spermatozoa. Belmonte SA, etal., Biol Reprod. 2000 Oct;63(4):1172-8.
2. Activation of insulin-like growth factor II receptor induces mitochondrial-dependent apoptosis through G(alpha)q and downstream calcineurin signaling in myocardial cells. Chu CH, etal., Endocrinology. 2009 Jun;150(6):2723-31. Epub 2008 Dec 18.
3. A highly phosphorylated subpopulation of insulin-like growth factor II/mannose 6-phosphate receptors is concentrated in a clathrin-enriched plasma membrane fraction. Corvera S, etal., Proc Natl Acad Sci U S A. 1988 Oct;85(20):7567-71.
4. Up-regulation of insulin-like growth factor-II receptor in reactive astrocytes in the spinal cord of amyotrophic lateral sclerosis transgenic rats. Dagvajantsan B, etal., Tohoku J Exp Med. 2008 Apr;214(4):303-10.
5. M6P/IGF2R gene is mutated in human hepatocellular carcinomas with loss of heterozygosity. De Souza AT, etal., Nat Genet. 1995 Dec;11(4):447-9.
6. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
7. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
8. M6P/IGF2 receptor: a candidate breast tumor suppressor gene. Hankins GR, etal., Oncogene. 1996 May 2;12(9):2003-9.
9. Insulin-like growth factor-II/mannose-6-phosphate receptor: widespread distribution in neurons of the central nervous system including those expressing cholinergic phenotype. Hawkes C and Kar S, J Comp Neurol 2003 Mar 31;458(2):113-27.
10. Single transmembrane domain insulin-like growth factor-II/mannose-6-phosphate receptor regulates central cholinergic function by activating a G-protein-sensitive, protein kinase C-dependent pathway. Hawkes C, etal., J Neurosci. 2006 Jan 11;26(2):585-96.
11. 3-Methyladenine specifically inhibits retrograde transport of cation-independent mannose 6-phosphate/insulin-like growth factor II receptor from the early endosome to the TGN. Hirosako K, etal., Biochem Biophys Res Commun. 2004 Apr 9;316(3):845-52.
12. Clinical significance of loss of heterozygosity for M6P/IGF2R in patients with primary hepatocellular carcinoma. Jang HS, etal., World J Gastroenterol. 2008 Mar 7;14(9):1394-8. doi: 10.3748/wjg.14.1394.
13. Organ-specific changes in the expression of mannose-6-phosphate receptors during postnatal development in rats. Jofre GF, etal., Cells Tissues Organs. 2009;190(1):27-33. Epub 2008 Sep 30.
14. Mannose 6-phosphate/insulin-like growth factor II receptor mediates the growth-inhibitory effects of retinoids. Kang JX, etal., Cell Growth Differ. 1999 Aug;10(8):591-600.
15. Retinoic acid alters the intracellular trafficking of the mannose-6-phosphate/insulin-like growth factor II receptor and lysosomal enzymes. Kang JX, etal., Proc Natl Acad Sci U S A. 1998 Nov 10;95(23):13687-91.
16. Loss of the imprinted IGF2/cation-independent mannose 6-phosphate receptor results in fetal overgrowth and perinatal lethality. Lau MM, etal., Genes Dev 1994 Dec 15;8(24):2953-63.
17. Expression and prognostic significance of insulin‑like growth factor-2 receptor in human hepatocellular carcinoma and the influence of transarterial chemoembolization. Lautem A, etal., Oncol Rep. 2019 Apr;41(4):2299-2310. doi: 10.3892/or.2019.6995. Epub 2019 Feb 1.
18. Roles of insulin-like growth factor II in cardiomyoblast apoptosis and in hypertensive rat heart with abdominal aorta ligation. Lee SD, etal., Am J Physiol Endocrinol Metab. 2006 Aug;291(2):E306-14.
19. A single receptor binds both insulin-like growth factor II and mannose-6-phosphate. MacDonald RG, etal., Science 1988 Mar 4;239(4844):1134-7.
20. The insulin-like growth factor-II receptor gene is associated with type 1 diabetes: evidence of a maternal effect. McCann JA, etal., J Clin Endocrinol Metab. 2004 Nov;89(11):5700-6.
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PMID:1298967   PMID:2963825   PMID:10900005   PMID:12729502   PMID:14566968   PMID:15078902   PMID:17959629   PMID:18817523   PMID:19056867   PMID:19764351   PMID:19946888   PMID:20889566  
PMID:21412773   PMID:21423176   PMID:21433279   PMID:21443795   PMID:22456507   PMID:22521359   PMID:22681933   PMID:23376485   PMID:23419388   PMID:23495048   PMID:23533145   PMID:24667322  
PMID:25536374   PMID:28383811   PMID:28796250   PMID:28812967   PMID:29136764   PMID:29574782   PMID:31211784   PMID:31584202   PMID:34145441   PMID:34586566   PMID:36462176   PMID:36928640  



Igf2r
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,526,878 - 50,615,265 (+)NCBIGRCr8
mRatBN7.2147,979,109 - 48,067,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,979,109 - 48,067,501 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,670,745 - 48,759,134 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,656,245 - 54,744,657 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,746,270 - 48,834,659 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0148,176,095 - 48,264,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl148,176,106 - 48,264,477 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,488,767 - 51,577,141 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4142,253,273 - 42,341,646 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1142,256,217 - 42,344,589 (+)NCBI
Celera143,778,518 - 43,867,238 (+)NCBICelera
Cytogenetic Map1q11NCBI
IGF2R
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386159,969,082 - 160,111,504 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6159,969,082 - 160,113,507 (+)EnsemblGRCh38hg38GRCh38
GRCh376160,390,114 - 160,532,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,310,121 - 160,447,573 (+)NCBINCBI36Build 36hg18NCBI36
Build 346160,360,541 - 160,497,992NCBI
Celera6161,035,974 - 161,173,355 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6157,860,740 - 157,998,270 (+)NCBIHuRef
CHM1_16160,652,348 - 160,789,828 (+)NCBICHM1_1
T2T-CHM13v2.06161,215,266 - 161,357,599 (+)NCBIT2T-CHM13v2.0
Igf2r
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391712,901,293 - 12,988,593 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1712,901,293 - 12,988,551 (-)EnsemblGRCm39 Ensembl
GRCm381712,682,406 - 12,769,706 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,682,406 - 12,769,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv371712,875,272 - 12,962,572 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361712,525,771 - 12,613,022 (-)NCBIMGSCv36mm8
Celera1712,714,412 - 12,801,753 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.64NCBI
Igf2r
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543920,752,855 - 20,851,281 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543920,754,915 - 20,874,759 (-)NCBIChiLan1.0ChiLan1.0
IGF2R
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25180,068,746 - 180,206,598 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16177,973,023 - 178,110,866 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06157,852,565 - 157,990,049 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16162,884,786 - 162,983,968 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6162,878,661 - 162,997,762 (+)Ensemblpanpan1.1panPan2
IGF2R
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1149,161,551 - 49,262,260 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl149,161,444 - 49,262,277 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha150,002,759 - 50,102,366 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,345,406 - 49,445,163 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,345,406 - 49,445,163 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,227,935 - 49,327,529 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0149,099,537 - 49,199,165 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,714,384 - 49,814,084 (+)NCBIUU_Cfam_GSD_1.0
Igf2r
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946144,195,094 - 144,271,698 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,447,038 - 11,524,174 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,447,043 - 11,523,695 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IGF2R
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,368,103 - 7,472,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,369,485 - 7,472,480 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.219,168,321 - 9,271,328 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IGF2R
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,587,717 - 87,723,795 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1387,587,907 - 87,724,116 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604059,978,473 - 60,111,795 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Igf2r
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248552,753,994 - 2,887,151 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248552,752,676 - 2,887,327 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Igf2r
89 total Variants

Predicted Target Of
Summary Value
Count of predictions:501
Count of miRNA genes:256
Interacting mature miRNAs:310
Transcripts:ENSRNOT00000021840
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat

1 to 10 of 45 rows
25.mHAa3f1.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2148,026,370 - 48,026,559 (+)MAPPERmRatBN7.2
Rnor_6.0148,223,355 - 48,223,543NCBIRnor6.0
Rnor_5.0151,529,704 - 51,529,892UniSTSRnor5.0
RGSC_v3.4142,300,522 - 42,300,710UniSTSRGSC3.4
Celera143,826,107 - 43,826,295UniSTS
Cytogenetic Map1q11UniSTS
RH128065  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2148,067,163 - 48,067,372 (+)MAPPERmRatBN7.2
Rnor_6.0148,264,145 - 48,264,353NCBIRnor6.0
Rnor_5.0151,488,893 - 51,489,101UniSTSRnor5.0
RGSC_v3.4142,341,312 - 42,341,520UniSTSRGSC3.4
Celera143,866,901 - 43,867,109UniSTS
RH 3.4 Map1566.6UniSTS
Cytogenetic Map1q11UniSTS
RH94626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2148,066,393 - 48,066,568 (+)MAPPERmRatBN7.2
Rnor_6.0148,263,375 - 48,263,549NCBIRnor6.0
Rnor_5.0151,489,697 - 51,489,871UniSTSRnor5.0
RGSC_v3.4142,340,542 - 42,340,716UniSTSRGSC3.4
Celera143,866,131 - 43,866,305UniSTS
Cytogenetic Map1q11UniSTS
RH137924  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,996,773 - 47,997,010 (+)MAPPERmRatBN7.2
Rnor_6.0148,193,759 - 48,193,995NCBIRnor6.0
Rnor_5.0151,559,252 - 51,559,488UniSTSRnor5.0
RGSC_v3.4142,270,926 - 42,271,162UniSTSRGSC3.4
Celera143,796,182 - 43,796,418UniSTS
RH 3.4 Map1564.0UniSTS
Cytogenetic Map1q11UniSTS
Igf2r  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0151,488,890 - 51,489,008UniSTSRnor5.0
Cytogenetic Map1q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000021840   ⟹   ENSRNOP00000021840
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,979,109 - 48,067,501 (+)Ensembl
Rnor_6.0 Ensembl148,176,106 - 48,264,477 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104985   ⟹   ENSRNOP00000095398
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl148,000,044 - 48,067,501 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108241   ⟹   ENSRNOP00000092757
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,992,461 - 48,067,501 (+)Ensembl
RefSeq Acc Id: NM_012756   ⟹   NP_036888
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,526,878 - 50,615,265 (+)NCBI
mRatBN7.2147,979,109 - 48,067,501 (+)NCBI
Rnor_6.0148,176,095 - 48,264,482 (+)NCBI
Rnor_5.0151,488,767 - 51,577,141 (-)NCBI
RGSC_v3.4142,253,273 - 42,341,646 (+)RGD
Celera143,778,518 - 43,867,238 (+)NCBI
Sequence:
1 to 10 of 10 rows
Protein RefSeqs NP_036888 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB03185 (Get FASTA)   NCBI Sequence Viewer  
  EDL83051 (Get FASTA)   NCBI Sequence Viewer  
  EDL83052 (Get FASTA)   NCBI Sequence Viewer  
  EDL83053 (Get FASTA)   NCBI Sequence Viewer  
  EDL83054 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000021840
  ENSRNOP00000021840.3
  ENSRNOP00000092757.1
  ENSRNOP00000095398.1
1 to 10 of 10 rows
RefSeq Acc Id: NP_036888   ⟸   NM_012756
- Peptide Label: precursor
- UniProtKB: G3V824 (UniProtKB/TrEMBL),   A6KJW4 (UniProtKB/TrEMBL),   Q63002 (UniProtKB/TrEMBL),   Q63757 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021840   ⟸   ENSRNOT00000021840
Ensembl Acc Id: ENSRNOP00000092757   ⟸   ENSRNOT00000108241
Ensembl Acc Id: ENSRNOP00000095398   ⟸   ENSRNOT00000104985
Fibronectin type-II   MRH

Name Modeler Protein Id AA Range Protein Structure
AF-G3V824-F1-model_v2 AlphaFold G3V824 1-2481 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689617
Promoter ID:EPDNEW_R142
Type:initiation region
Name:Igf2r_1
Description:insulin-like growth factor 2 receptor
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0148,176,088 - 48,176,148EPDNEW


1 to 40 of 41 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61574 BioCyc
Ensembl Genes ENSRNOG00000014997 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000021840 ENTREZGENE
  ENSRNOT00000021840.5 UniProtKB/TrEMBL
  ENSRNOT00000104985.1 UniProtKB/TrEMBL
  ENSRNOT00000108241.1 UniProtKB/TrEMBL
Gene3D-CATH 2.10.10.10 UniProtKB/TrEMBL
  2.70.130.10 UniProtKB/TrEMBL
InterPro CIMR UniProtKB/TrEMBL
  FN_type2_col-bd UniProtKB/TrEMBL
  FN_type2_sf UniProtKB/TrEMBL
  Kringle-like UniProtKB/TrEMBL
  Man6P_isomerase_rcpt-bd UniProtKB/TrEMBL
  MRH_dom UniProtKB/TrEMBL
KEGG Report rno:25151 UniProtKB/TrEMBL
NCBI Gene 25151 ENTREZGENE
PANTHER CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR UniProtKB/TrEMBL
  MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER UniProtKB/TrEMBL
Pfam CIMR UniProtKB/TrEMBL
  fn2 UniProtKB/TrEMBL
PhenoGen Igf2r PhenoGen
PRINTS FNTYPEII UniProtKB/TrEMBL
PROSITE FN2_1 UniProtKB/TrEMBL
  FN2_2 UniProtKB/TrEMBL
  MRH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014997 RatGTEx
SMART CIMR UniProtKB/TrEMBL
  FN2 UniProtKB/TrEMBL
Superfamily-SCOP Kringle-like UniProtKB/TrEMBL
  SSF50911 UniProtKB/TrEMBL
TIGR TC216531
UniProt A0A8I6AI55_RAT UniProtKB/TrEMBL
  A0A8I6GLL6_RAT UniProtKB/TrEMBL
  A6KJW3_RAT UniProtKB/TrEMBL
  A6KJW4 ENTREZGENE, UniProtKB/TrEMBL
  A6KJW5_RAT UniProtKB/TrEMBL
  A6KJW6_RAT UniProtKB/TrEMBL
  G3V824 ENTREZGENE, UniProtKB/TrEMBL
  Q63002 ENTREZGENE, UniProtKB/TrEMBL
  Q63757 ENTREZGENE
1 to 40 of 41 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Igf2r  insulin-like growth factor 2 receptor      Symbol and Name status set to approved 70586 APPROVED

Note Type Note Reference
gene_process required for cytotoxic T cell-mediated apoptosis and rejection of allogeneic cells  
gene_process involved in suppression of several carcinomas