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Gene: Grm3 (glutamate metabotropic receptor 3) Rattus norvegicus

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Symbol:

Grm3

Name:

glutamate metabotropic receptor 3

RGD ID:

2744

Description:

Enables group II metabotropic glutamate receptor activity and scaffold protein binding activity. Involved in modulation of chemical synaptic transmission. Located in astrocyte projection and axon. Orthologous to human GRM3 (glutamate metabotropic receptor 3); PARTICIPATES IN glutamate signaling pathway; INTERACTS WITH (+)-pilocarpine; 17alpha-ethynylestradiol; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

glutamate receptor, metabotropic 3; LOC689121; LOC689135; metabotropic glutamate receptor 3; mGluR3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GRM3 (glutamate metabotropic receptor 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Grm3 (glutamate receptor, metabotropic 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Grm3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GRM3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GRM3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Grm3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GRM3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GRM3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Grm3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Grm3 (glutamate metabotropic receptor 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GRM3 (glutamate metabotropic receptor 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Grm3 (glutamate receptor, metabotropic 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	grm3 (glutamate receptor, metabotropic 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mGluR	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	mGluR	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mgl-1	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	mgl-1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	grm3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	grm3	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	25,319,218 - 25,600,721 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	25,319,942 - 25,564,764 (+)	Ensembl				GRCr8
mRatBN7.2	4	24,364,854 - 24,643,972 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	24,365,115 - 24,609,804 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	29,383,135 - 29,627,784 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	25,309,367 - 25,554,029 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	23,682,930 - 23,927,592 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	21,316,761 - 21,567,561 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	21,317,695 - 21,560,490 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	21,395,468 - 21,492,672 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	20,745,424 - 22,118,097 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	19,871,649 - 20,110,051 (+)	NCBI		Celera
RGSC_v3.1	4	20,888,668 - 22,118,011 (+)	NCBI
Cytogenetic Map	4	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

melanoma (ISO)

schizophrenia (ISO)

temporal lobe epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (EXP)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4-amino-2,6-dinitrotoluene (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

chaetocin (EXP)

clobetasol (ISO)

cocaine (EXP)

diazinon (EXP)

diethylstilbestrol (EXP)

diphenylamine (ISO)

dorsomorphin (ISO)

ethanol (EXP,ISO)

fenofibrate (ISO)

fentanyl (EXP)

fluoxetine (EXP)

fulvestrant (ISO)

genistein (EXP)

ketamine (EXP)

ketoconazole (EXP)

lithium atom (ISO)

lithium hydride (ISO)

methamphetamine (EXP)

methoxychlor (EXP)

methylmercury chloride (ISO)

N-acetyl-L-cysteine (ISO)

N-Nitrosopyrrolidine (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

ozone (EXP)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

phenylmercury acetate (ISO)

PhIP (ISO)

resveratrol (ISO)

SB 431542 (ISO)

tetrachloromethane (EXP)

trichostatin A (ISO)

triclosan (ISO)

trimethyltin (ISO)

troglitazone (ISO)

valproic acid (EXP,ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-inhibiting G protein-coupled glutamate receptor signaling pathway (IEA)

cellular response to stress (ISO)

G protein-coupled glutamate receptor signaling pathway (IBA,IEA,ISO)

G protein-coupled receptor signaling pathway (IEA)

gene expression (ISO)

modulation of chemical synaptic transmission (IDA)

postsynaptic modulation of chemical synaptic transmission (IEA,ISO)

regulation of synaptic transmission, glutamatergic (IBA)

sensory perception of pain (TAS)

signal transduction (IEA)

Cellular Component

astrocyte projection (IDA,IEA)

axon (IDA,IEA,ISO)

dendritic spine (IEA,ISO)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

neuron projection (IEA,ISO)

plasma membrane (IBA,IEA,ISO)

postsynaptic density (IEA,ISO)

postsynaptic membrane (IEA,ISO)

presynaptic membrane (IEA,ISO)

Molecular Function

calcium channel regulator activity (IEA,ISO)

G protein-coupled receptor activity (IEA)

group II metabotropic glutamate receptor activity (IBA,IEA,IMP,ISO)

protein binding (ISO)

scaffold protein binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

glutamate signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Structural plasticity of perisynaptic astrocyte processes involves ezrin and metabotropic glutamate receptors.	Lavialle M, etal., Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12915-9. doi: 10.1073/pnas.1100957108. Epub 2011 Jul 13.
4.	Modulation of epileptiform burst frequency by the metabotropic glutamate receptor subtype mGluR3.	Lea PM 4th and Sarvey JM, Epilepsy Res 2003 Mar;53(3):207-15.
5.	[Levels of histamine in the tissues of the stomach and liver of non-pregnant and pregnant guinea pigs, their fetuses, in the blood of pregnant females and in fetal fluids].	Lipovskii SM Fiziol Zh SSSR Im I M Sechenova. 1975 Jan;61(1):90-5.
6.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
7.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
8.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Group II metabotropic glutamate receptor interactions with NHERF scaffold proteins: Implications for receptor localization in brain.	Ritter-Makinson SL, etal., Neuroscience. 2017 Jun 14;353:58-75. doi: 10.1016/j.neuroscience.2017.03.060. Epub 2017 Apr 7.
13.	A family of metabotropic glutamate receptors.	Tanabe Y, etal., Neuron 1992 Jan;8(1):169-79.
14.	Transcriptome analysis of frontal cortex in alcohol-preferring and nonpreferring rats.	Worst TJ, etal., J Neurosci Res 2005 May 15;80(4):529-38.

Additional References at PubMed

PMID:1298935	PMID:7965099	PMID:11591452	PMID:11850456	PMID:11891216	PMID:12074840	PMID:12098644	PMID:12363402	PMID:12746871	PMID:12887692	PMID:14663150	PMID:15030392
PMID:15494036	PMID:15579147	PMID:15635057	PMID:15799084	PMID:15845577	PMID:15862522	PMID:16000629	PMID:16417588	PMID:16760343	PMID:16793029	PMID:17005860	PMID:17216195
PMID:17224239	PMID:17401670	PMID:17402968	PMID:17630217	PMID:18021417	PMID:18035348	PMID:18804094	PMID:19255473	PMID:19374778	PMID:19429193	PMID:21198990	PMID:22245498
PMID:22245662	PMID:22479593	PMID:22531751	PMID:22984605	PMID:24067361	PMID:24291464	PMID:25583490	PMID:26051401	PMID:26071959	PMID:27565411	PMID:28495373	PMID:29024663
PMID:30005976	PMID:31050077	PMID:31710636	PMID:31735403

Genomics

Comparative Map Data

Grm3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	25,319,218 - 25,600,721 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	25,319,942 - 25,564,764 (+)	Ensembl				GRCr8
mRatBN7.2	4	24,364,854 - 24,643,972 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	24,365,115 - 24,609,804 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	29,383,135 - 29,627,784 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	25,309,367 - 25,554,029 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	23,682,930 - 23,927,592 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	21,316,761 - 21,567,561 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	21,317,695 - 21,560,490 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	21,395,468 - 21,492,672 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	20,745,424 - 22,118,097 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	19,871,649 - 20,110,051 (+)	NCBI		Celera
RGSC_v3.1	4	20,888,668 - 22,118,011 (+)	NCBI
Cytogenetic Map	4	q12	NCBI

GRM3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	86,643,909 - 86,864,879 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	86,643,909 - 86,864,884 (+)	Ensembl			hg38	GRCh38
GRCh37	7	86,273,225 - 86,494,195 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	86,111,166 - 86,332,128 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	85,917,880 - 86,138,843	NCBI
Celera	7	80,977,204 - 81,198,167 (+)	NCBI		Celera
Cytogenetic Map	7	q21.11-q21.12	NCBI
HuRef	7	80,884,478 - 81,105,436 (+)	NCBI		HuRef
CHM1_1	7	86,203,231 - 86,424,248 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	87,893,808 - 88,114,781 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	85,604,962 - 85,825,938 (+)	NCBI

Grm3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	9,535,235 - 9,776,087 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	9,535,541 - 9,775,170 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	9,485,236 - 9,725,352 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	9,485,541 - 9,725,170 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	9,485,236 - 9,725,352 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	9,491,242 - 9,731,358 (-)	NCBI		MGSCv36	mm8
Celera	5	9,402,805 - 9,643,075 (-)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI
cM Map	5	3.69	NCBI

Grm3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	104,242 - 184,921 (-)	Ensembl
ChiLan1.0	NW_004955410	103,774 - 185,062 (-)	NCBI	ChiLan1.0	ChiLan1.0

GRM3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	104,513,101 - 104,734,001 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	152,778,494 - 152,998,628 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	78,621,634 - 78,842,532 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	92,279,079 - 92,500,553 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	92,400,728 - 92,500,553 (+)	Ensembl			panPan2	panpan1.1

GRM3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	12,861,093 - 13,069,829 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	12,980,180 - 13,069,823 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	12,495,006 - 12,703,930 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	12,622,206 - 12,831,301 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	12,622,212 - 12,848,681 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	12,827,178 - 13,036,385 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	12,553,520 - 12,762,200 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	12,836,839 - 13,046,196 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Grm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	67,194,717 - 67,402,093 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936653	392,855 - 553,498 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936653	345,770 - 553,460 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRM3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	93,731,217 - 93,973,543 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	93,731,210 - 93,974,718 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	103,209,681 - 103,422,774 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRM3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	62,072,271 - 62,296,048 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	62,071,881 - 62,174,231 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	41,760,103 - 41,982,763 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Grm3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	34,303,586 - 34,386,306 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624739	34,192,929 - 34,386,297 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Grm3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	141,280,164 - 141,516,896 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Grm3
1601 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	212
Count of miRNA genes:	152
Interacting mature miRNAs:	177
Transcripts:	ENSRNOT00000007572
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	13080146	58080146	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	32668025	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	28392287	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	32668025	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	34142783	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	34142783	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
70222	Eae2	Experimental allergic encephalomyelitis QTL 2	4.3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	4	22288453	40471598	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	31106810	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	28392287	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	1	45429897	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	1	35396961	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	32668025	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	28392287	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	40471598	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	8428551	30449094	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5889999	50889999	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	1	35396961	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	33538816	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	32668025	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat
1354665	Stl10	Serum triglyceride level QTL 10	3.57		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	22288453	45429897	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	10758701	40490708	Rat

Markers in Region

D4Got201

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,834,009 - 24,834,180 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,786,139 - 21,786,309	NCBI	Rnor6.0
Rnor_5.0	4	21,717,503 - 21,717,673	UniSTS	Rnor5.0
RGSC_v3.4	4	21,252,921 - 21,253,091	UniSTS	RGSC3.4
Celera	4	20,331,370 - 20,331,564	UniSTS
Cytogenetic Map	4	q12	UniSTS

D4Wox53

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,357,584 - 25,357,782 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,339,947 - 22,340,144	NCBI	Rnor6.0
Rnor_5.0	4	22,276,508 - 22,276,705	UniSTS	Rnor5.0
RGSC_v3.4	4	21,796,313 - 21,796,510	UniSTS	RGSC3.4
Celera	4	20,849,693 - 20,849,890	UniSTS
Cytogenetic Map	4	q12	UniSTS

D4Got255

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,370,290 - 24,370,451 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,322,871 - 21,323,031	NCBI	Rnor6.0
Rnor_5.0	4	21,256,235 - 21,256,395	UniSTS	Rnor5.0
RGSC_v3.4	4	20,750,600 - 20,750,760	UniSTS	RGSC3.4
Celera	4	19,876,825 - 19,876,985	UniSTS
Cytogenetic Map	4	q12	UniSTS

D4Got287

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	25,975,485 - 25,975,598 (+)	Marker Load Pipeline
mRatBN7.2	4	25,020,540 - 25,020,656 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,972,197 - 21,972,310	NCBI	Rnor6.0
Rnor_5.0	4	21,902,885 - 21,902,998	UniSTS	Rnor5.0
RGSC_v3.4	4	21,440,203 - 21,440,316	UniSTS	RGSC3.4
Celera	4	20,518,533 - 20,518,646	UniSTS
Cytogenetic Map	4	q12	UniSTS

D4Ulb3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	25,837,843 - 25,838,019 (+)	Marker Load Pipeline
mRatBN7.2	4	24,882,891 - 24,883,065 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,834,757 - 21,834,930	NCBI	Rnor6.0
Rnor_5.0	4	21,766,121 - 21,766,294	UniSTS	Rnor5.0
RGSC_v3.4	4	21,301,804 - 21,301,977	UniSTS	RGSC3.4
Celera	4	20,380,315 - 20,380,488	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH70765

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	7	12,244,100 - 12,244,891 (+)	MAPPER	mRatBN7.2
Rnor_6.0	7	15,409,622 - 15,410,412	NCBI	Rnor6.0
Rnor_5.0	7	15,580,624 - 15,581,414	UniSTS	Rnor5.0
RGSC_v3.4	7	13,823,096 - 13,823,886	UniSTS	RGSC3.4
RGSC_v3.4	4	21,694,148 - 21,694,268	UniSTS	RGSC3.4
Celera	7	10,337,601 - 10,338,391	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH139066

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,631,612 - 25,631,808 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,617,843 - 22,618,038	NCBI	Rnor6.0
Rnor_5.0	4	22,549,391 - 22,549,586	UniSTS	Rnor5.0
RGSC_v3.4	4	21,512,279 - 21,512,474	UniSTS	RGSC3.4
Celera	4	21,117,395 - 21,117,590	UniSTS
RH 3.4 Map	4	151.9	UniSTS
Cytogenetic Map	4	q12	UniSTS

WI-18027

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	25,564,409 - 25,564,533 (+)	Marker Load Pipeline
mRatBN7.2	4	24,609,448 - 24,609,573 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,560,135 - 21,560,259	NCBI	Rnor6.0
Rnor_5.0	4	21,492,317 - 21,492,441	UniSTS	Rnor5.0
RGSC_v3.4	4	22,117,742 - 22,117,866	UniSTS	RGSC3.4
Celera	4	20,109,696 - 20,109,820	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH133796

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,076,110 - 25,076,307 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	25,093,692 - 25,093,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,077,121 - 22,077,317	NCBI	Rnor6.0
Rnor_5.0	4	22,013,779 - 22,013,975	UniSTS	Rnor5.0
RGSC_v3.4	4	22,071,316 - 22,071,512	UniSTS	RGSC3.4
Celera	4	20,571,456 - 20,571,652	UniSTS
RH 3.4 Map	4	144.3	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH142432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,132,724 - 25,132,963 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,115,881 - 22,116,119	NCBI	Rnor6.0
Rnor_5.0	4	22,052,703 - 22,052,941	UniSTS	Rnor5.0
RGSC_v3.4	4	22,024,059 - 22,024,297	UniSTS	RGSC3.4
Celera	4	20,625,873 - 20,626,111	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH144027

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,609,610 - 24,609,741 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,560,297 - 21,560,427	NCBI	Rnor6.0
Rnor_5.0	4	21,492,479 - 21,492,609	UniSTS	Rnor5.0
RGSC_v3.4	4	22,117,904 - 22,118,034	UniSTS	RGSC3.4
Celera	4	20,109,858 - 20,109,988	UniSTS
RH 3.4 Map	4	119.6	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH137636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,923,422 - 24,923,670 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,875,437 - 21,875,684	NCBI	Rnor6.0
Rnor_5.0	4	21,806,801 - 21,807,048	UniSTS	Rnor5.0
RGSC_v3.4	4	21,342,329 - 21,342,576	UniSTS	RGSC3.4
Celera	4	20,420,864 - 20,421,111	UniSTS
RH 3.4 Map	4	136.6	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	4	q12-q13	UniSTS

RH138123

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,932,604 - 24,932,820 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,884,619 - 21,884,834	NCBI	Rnor6.0
Rnor_5.0	4	21,815,983 - 21,816,198	UniSTS	Rnor5.0
RGSC_v3.4	4	21,351,511 - 21,351,726	UniSTS	RGSC3.4
Celera	4	20,430,046 - 20,430,261	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	4	q12-q13	UniSTS

RH139646

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,951,018 - 24,951,200 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,903,031 - 21,903,212	NCBI	Rnor6.0
Rnor_5.0	4	21,834,395 - 21,834,576	UniSTS	Rnor5.0
RGSC_v3.4	4	21,369,924 - 21,370,105	UniSTS	RGSC3.4
Celera	4	20,448,467 - 20,448,648	UniSTS
RH 3.4 Map	4	142.2	UniSTS
RH 3.4 Map	4	144.6	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	4	q12-q13	UniSTS

RH140325

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,599,222 - 25,599,412 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,586,439 - 22,586,628	NCBI	Rnor6.0
Rnor_5.0	4	22,518,099 - 22,518,288	UniSTS	Rnor5.0
RGSC_v3.4	4	21,546,224 - 21,546,413	UniSTS	RGSC3.4
Celera	4	21,085,038 - 21,085,227	UniSTS
RH 3.4 Map	4	151.0	UniSTS
Cytogenetic Map	4	q12	UniSTS

RH141561

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,925,306 - 24,925,490 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,877,321 - 21,877,504	NCBI	Rnor6.0
Rnor_5.0	4	21,808,685 - 21,808,868	UniSTS	Rnor5.0
RGSC_v3.4	4	21,344,213 - 21,344,396	UniSTS	RGSC3.4
Celera	4	20,422,748 - 20,422,931	UniSTS
RH 3.4 Map	4	136.8	UniSTS
Cytogenetic Map	4	q12	UniSTS
Cytogenetic Map	4	q12-q13	UniSTS

RH142062

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	25,607,755 - 25,607,955 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	22,594,972 - 22,595,167	NCBI	Rnor6.0
Rnor_5.0	4	22,526,632 - 22,526,827	UniSTS	Rnor5.0
RGSC_v3.4	4	21,537,681 - 21,537,880	UniSTS	RGSC3.4
Celera	4	21,093,571 - 21,093,770	UniSTS
Cytogenetic Map	4	q12	UniSTS

Grm3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	24,365,031 - 24,365,096 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	21,317,612 - 21,317,676	NCBI	Rnor6.0
Rnor_5.0	4	21,250,976 - 21,251,040	UniSTS	Rnor5.0
RGSC_v3.4	4	20,745,341 - 20,745,405	UniSTS	RGSC3.4
Celera	4	19,871,566 - 19,871,630	UniSTS
Cytogenetic Map	4	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	7	26	155	59	58	31	24	31	6	166	70	135	50	80	27	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001105712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M92076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	MG021096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007572 ⟹ ENSRNOP00000007572

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	25,319,942 - 25,564,764 (+)	Ensembl
mRatBN7.2 Ensembl	4	24,365,115 - 24,609,804 (+)	Ensembl
Rnor_6.0 Ensembl	4	21,317,695 - 21,560,490 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089747 ⟹ ENSRNOP00000069396

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	25,319,942 - 25,559,431 (+)	Ensembl
mRatBN7.2 Ensembl	4	24,365,115 - 24,609,449 (+)	Ensembl
Rnor_6.0 Ensembl	4	21,462,779 - 21,555,154 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109555 ⟹ ENSRNOP00000096683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	25,319,970 - 25,564,534 (+)	Ensembl
mRatBN7.2 Ensembl	4	24,365,115 - 24,609,449 (+)	Ensembl

RefSeq Acc Id:

NM_001105712 ⟹ NP_001099182

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,320,076 - 25,564,764 (+)	NCBI
mRatBN7.2	4	24,365,115 - 24,609,804 (+)	NCBI
Rnor_6.0	4	21,317,695 - 21,560,490 (+)	NCBI
Rnor_5.0	4	21,395,468 - 21,492,672 (+)	NCBI
RGSC_v3.4	4	20,745,424 - 22,118,097 (+)	RGD
Celera	4	19,871,649 - 20,110,051 (+)	RGD

Sequence:

show sequence

GAGCCAGAGCCTGGGTGCAGGCTCACCGCTGCCGCTACCACCGCGGTCAGCTTCAGTTCCTGCC
AGGAGTTGACGGTGCGAGGAATTCGGTGACGGGCTCTTTCAGCCCAATCCTCCCTTATCTGAAG
GACAGGCAAAAGATTCCACTTGGAAATGAGAGAAGACTAGAAGGAAACATTGGCTTCACCAAGT
GATATCTCCAAGAGATATAGAAACAGGATTCATGAAGATGTTGACAAGACTACAAATTCTTATG
TTAGCTTTGTTTTCAAAGGGATTTTTACTCTCTTTAGGAGATCACAACTTTATGAGGAGGGAAA
TTAAAATAGAAGGAGACCTTGTTTTAGGAGGCTTATTTCCTATTAATGAAAAAGGCACTGGAAC
TGAAGAGTGTGGGCGAATCAATGAAGACCGAGGTATCCAACGCCTGGAGGCCATGTTGTTTGCC
ATCGACGAGATTAACAAAGACAATTACTTGCTCCCAGGAGTGAAGCTGGGTGTTCATATTTTGG
ATACATGTTCAAGGGATACCTATGCATTAGAGCAATCACTGGAGTTTGTCAGGGCATCTTTGAC
TAAAGTGGATGAAGCCGAGTATATGTGTCCTGATGGATCATATGCTATTCAAGAAAACATCCCA
CTGCTCATTGCAGGAGTCATTGGTGGTTCATACAGCAGTGTTTCCATACAGGTGGCAAACCTGC
TGAGGCTCTTCCAGATCCCTCAGATAAGCTACGCCTCCACCAGCGCCAAACTCAGTGACAAGTC
GCGCTATGATTACTTTGCCAGGACCGTGCCCCCTGACTTCTACCAGGCCAAAGCCATGGCCGAG
ATCTTGCGCTTCTTCAACTGGACCTATGTGTCCACCGTTGCCTCTGAGGGTGACTATGGGGAGA
CAGGGATTGAGGCCTTCGAGCAGGAAGCACGGCTGCGTAACATCTGCATCGCCACTGCTGAAAA
GGTGGGCCGCTCCAACATCCGCAAGTCCTACGACAGCGTGATACGTGAGCTCCTGCAGAAACCC
AATGCGCGGGTCGTGGTCCTGTTCATGCGCAGTGACGACTCACGAGAGCTGATCGCGGCAGCCA
ACCGCGTGAATGCCTCCTTCACCTGGGTGGCCAGCGACGGCTGGGGTGCTCAGGAGAGCATAGT
CAAGGGCAGTGAGCATGTAGCCTATGGCGCCATCACCCTTGAGCTGGCATCTCACCCGGTTCGC
CAGTTTGATCGCTACTTCCAGAGCCTCAACCCCTACAACAATCATCGTAACCCCTGGTTCCGAG
ACTTCTGGGAGCAGAAGTTCCAGTGCAGCCTCCAGAACAAGAGAAACCACAGACAGGTTTGTGA
CAAGCACCTGGCCATTGACAGCAGCAACTATGAGCAAGAATCCAAGATTATGTTTGTGGTGAAT
GCAGTGTACGCCATGGCGCATGCGCTGCACAAAATGCAGCGCACCCTCTGTCCCAACACCACCA
AGCTCTGTGATGCAATGAAGATCCTAGATGGAAAGAAATTGTACAAGGAGTATTTGCTGAAAAT
CAACTTCACAGCTCCATTCAACCCAAATAAAGGAGCAGACAGCATTGTGAAGTTTGACACTTTT
GGAGACGGGATGGGAAGATACAACGTGTTCAACTTGCAGCAGACAGGTGGGAAGTATTCTTACT
TGAAGGTTGGCCACTGGGCAGAAACCTTGTCTCTAGATGTGGACTCTATCCATTGGTCCCGGAA
CTCAGTCCCCACTTCCCAGTGCAGTGATCCCTGTGCCCCGAATGAAATGAAGAACATGCAGCCC
GGGGATGTTTGCTGCTGGATCTGTATCCCCTGTGAGCCCTATGAATACCTGGTCGATGAGTTCA
CCTGTATGGATTGTGGCCCTGGCCAGTGGCCCACTGCAGACCTATCTGGATGCTACAACCTTCC
AGAGGATTACATCAAATGGGAAGACGCCTGGGCAATAGGCCCGGTCACCATTGCCTGCCTGGGC
TTTCTGTGTACATGCATAGTTATAACTGTTTTTATCAAGCACAACAACACACCCTTGGTCAAAG
CATCAGGTCGAGAACTCTGCTACATCTTGTTATTTGGAGTTAGCCTGTCCTATTGCATGACATT
CTTCTTCATTGCTAAGCCATCGCCTGTCATCTGTGCGTTGCGCCGACTTGGGCTTGGGACCTCT
TTCGCCATCTGTTATTCAGCGCTGCTGACCAAGACAAACTGCATTGCTCGCATCTTCGATGGGG
TCAAGAACGGCGCTCAGAGGCCGAAATTCATCAGCCCCAGTTCTCAGGTTTTTATTTGCCTGGG
TTTGATACTGGTGCAAATTGTGATGGTGTCCGTGTGGCTTATCCTGGAGACTCCAGGTACTAGA
AGATACACCCTTCCAGAGAAGCGGGAAACAGTCATCCTGAAATGCAATGTCAAAGATTCCAGCA
TGTTGATCTCTCTGACCTATGACGTGGTCCTGGTGATCCTATGCACTGTGTATGCCTTCAAAAC
GAGGAAGTGTCCTGAAAACTTCAATGAAGCCAAGTTTATAGGCTTCACCATGTACACCACCTGC
ATCATCTGGTTGGCATTCCTCCCTATATTTTATGTGACATCAAGTGACTACAGAGTGCAGACGA
CAACAATGTGCATCTCCGTTAGCCTGAGCGGTTTCGTGGTCTTGGGCTGTTTGTTTGCCCCCAA
GGTGCACATCGTCCTGTTCCAACCCCAGAAGAATGTGGTCACACACAGACTTCACCTCAACAGG
TTCAGCGTCAGCGGAACTGCAACCACCTATTCTCAGTCCTCTGCAAGCACATATGTCCCAACAG
TGTGCAACGGAAGGGAAGTCCTGGACTCCACCACCTCATCTCTGTGATTGTGATACGCAGTTCA
GTTCTCATGTTTTTAGGCTGTTAGACAAAGTGCTCACATGCTGCTCCAGAACATGGAAACAGAA
CAAAACAACAACCCTAGTATCTTTTTTTTTCTTTTTTTAGAAACAGTACAATAAATTATTTTTG
AGGACTGTATGGTATGTAGTGATGTGCTACAACTTTCTAGGCTGATTTTAGTGCCCTAATTAAC
AGCCCCTTCCCCAGGACATGGAAATAACCATTGTTTACAGAGCTGAGCATTGGTGACAGGGTCT
GACAGGGTCAGTCTACTAAAACGAAAAACAAAAAAGACAAAACAAAAAAAAATACAGTGGCAAT
ATTAGGTAACCTTTTTTCCTATGAAGTCTTTTGTAGGTTCTTGTTGTAACTAATTTAGGGTGAG
TTTCTACGTTGTATATTAAAGTTACATTACGTGTAACGGAGCGTTTTTCTCAGTACAAAATAAA
AAAGCATCTGTGTTAATGTCAAGATAATGGGAATAAAACCTTCAAGGTTTTCAAGC

hide sequence

RefSeq Acc Id:

XM_008762682 ⟹ XP_008760904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,801 (+)	NCBI
Rnor_6.0	4	21,316,761 - 21,567,561 (+)	NCBI

Sequence:

show sequence

GCTGACCCAGAGATTGTGCTGCACAAGCCTCCCCAGGGGTTCGCAATGTGCAGTTGAACCGCGT
GTGGGGCAAAGCTGCGTATCGGCCTCCGGGGTTCACTCGCTCACACTGCTCCCTCTTTCGACGT
CTCCTCCAAGTGTGGTCAGCCTTTTGATCGCAGGGACCACAGGAGAGTTCTTACTAGGAATGAC
TGTCGGTCCCTGCCCACCCGCGTGCCTGAGCCCTAGCAGAGCTTCAAAGTTGGAGCCACCTCCC
ACTCTACCTCCCCACGCCCCTTCACGCCACTGCTCCGAAATTCACCGACCTTTGCATGCATTGC
CTAAGGGCTGCAAACCTTAGGGCAGAGAAGCTCGCAACCCCGCCAGGCTTTCCGTATTGTAACC
TTCGGGTTTAGGTACAGTAGCTCACTGAAGACTCTGCAGATACACCCCTATAAACAGAGGGAAG
AAGGGGGAAGGGAACGGAGGAGAGAGGAAAGGAGAAAGAGAATGAGGAGGAGAGGATGTCAGAA
GGTCCGTGCCTCTCCGCCTGAGTACCAATTAGATGCGACTGTTTCAGCCTGGCCAAGGTGAAGG
AAAGTTGCTTCTGAGCCCAGGAAGTGGGTTTGGCTGCAAAGAGGAGGAGGGCGACTGGGCTCTA
AAGCTCCCCTCCCTTCTGCTGAAGACCACTGGGTCCCCTTCTTCCCAACCTCCTCTTGCTCTTC
TCCTCTAGCCCTCCCTTTTCCCACTCCTCCTTGACTCGGAGGCCTGGATGCTGGGCCACCGGGC
AGTGGTCCAGCGCGCAGCCGGGCGGGGGCGGGGGCAGGGGGCACTGTGACAGGAAGCTTCGCGC
ACAAGTTGGCCATTTCAGGGGCAAAATAACTTCTCCCTTGGATTTAGAAAGGACAAAGGCAGCA
AGCTCCCTCTTTTGTGTCGGATGAAGAGGACCAACCATGAGCCAGAGCCTGGGTGCAGGCTCAC
CGCTGCCGCTACCACCGCGGTCAGCTTCAGTTCCTGCCAGGAGTTGACGGTGCGAGGAATTCGG
TGACGGGCTCTTTCAGCCCAATCCTCCCTTATCTGAAGGACAGGCAAAAGATTCCACTTGGAAA
TGAGAGAAGACTAGAAGGAAACATTGGCTTCACCAAGTGATATCTCCAAGAGATATAGAAACAG
GATTCATGAAGATGTTGACAAGACTACAAATTCTTATGTTAGCTTTGTTTTCAAAGGGATTTTT
ACTCTCTTTAGGAGATCACAACTTTATGAGGAGGGAAATTAAAATAGAAGGAGACCTTGTTTTA
GGAGGCTTATTTCCTATTAATGAAAAAGGCACTGGAACTGAAGAGTGTGGGCGAATCAATGAAG
ACCGAGGTATCCAACGCCTGGAGGCCATGTTGTTTGCCATCGACGAGATTAACAAAGACAATTA
CTTGCTCCCAGGAGTGAAGCTGGGTGTTCATATTTTGGATACATGTTCAAGGGATACCTATGCA
TTAGAGCAATCACTGGAGTTTGTCAGGGCATCTTTGACTAAAGTGGATGAAGCCGAGTATATGT
GTCCTGATGGATCATATGCTATTCAAGAAAACATCCCACTGCTCATTGCAGGAGTCATTGGTGG
TTCATACAGCAGTGTTTCCATACAGGTGGCAAACCTGCTGAGGCTCTTCCAGATCCCTCAGATA
AGCTACGCCTCCACCAGCGCCAAACTCAGTGACAAGTCGCGCTATGATTACTTTGCCAGGACCG
TGCCCCCTGACTTCTACCAGGCCAAAGCCATGGCCGAGATCTTGCGCTTCTTCAACTGGACCTA
TGTGTCCACCGTTGCCTCTGAGGGTGACTATGGGGAGACAGGGATTGAGGCCTTCGAGCAGGAA
GCACGGCTGCGTAACATCTGCATCGCCACTGCTGAAAAGGTGGGCCGCTCCAACATCCGCAAGT
CCTACGACAGCGTGATACGTGAGCTCCTGCAGAAACCCAATGCGCGGGTCGTGGTCCTGTTCAT
GCGCAGTGACGACTCACGAGAGCTGATCGCGGCAGCCAACCGCGTGAATGCCTCCTTCACCTGG
GTGGCCAGCGACGGCTGGGGTGCTCAGGAGAGCATAGTCAAGGGCAGTGAGCATGTAGCCTATG
GCGCCATCACCCTTGAGCTGGCATCTCACCCGGTTCGCCAGTTTGATCGCTACTTCCAGAGCCT
CAACCCCTACAACAATCATCGTAACCCCTGGTTCCGAGACTTCTGGGAGCAGAAGTTCCAGTGC
AGCCTCCAGAACAAGAGAAACCACAGACAGGTTTGTGACAAGCACCTGGCCATTGACAGCAGCA
ACTATGAGCAAGAATCCAAGATTATGTTTGTGGTGAATGCAGTGTACGCCATGGCGCATGCGCT
GCACAAAATGCAGCGCACCCTCTGTCCCAACACCACCAAGCTCTGTGATGCAATGAAGATCCTA
GATGGAAAGAAATTGTACAAGGAGTATTTGCTGAAAATCAACTTCACAGCTCCATTCAACCCAA
ATAAAGGAGCAGACAGCATTGTGAAGTTTGACACTTTTGGAGACGGGATGGGAAGATACAACGT
GTTCAACTTGCAGCAGACAGGTGGGAAGTATTCTTACTTGAAGGTTGGCCACTGGGCAGAAACC
TTGTCTCTAGATGTGGACTCTATCCATTGGTCCCGGAACTCAGTCCCCACTTCCCAGTGCAGTG
ATCCCTGTGCCCCGAATGAAATGAAGAACATGCAGCCCGGGGATGTTTGCTGCTGGATCTGTAT
CCCCTGTGAGCCCTATGAATACCTGGTCGATGAGTTCACCTGTATGGATTGTGGCCCTGGCCAG
TGGCCCACTGCAGACCTATCTGGATGCTACAACCTTCCAGAGGATTACATCAAATGGGAAGACG
CCTGGGCAATAGGCCCGGTCACCATTGCCTGCCTGGGCTTTCTGTGTACATGCATAGTTATAAC
TGTTTTTATCAAGCACAACAACACACCCTTGGTCAAAGCATCAGGTCGAGAACTCTGCTACATC
TTGTTATTTGGAGTTAGCCTGTCCTATTGCATGACATTCTTCTTCATTGCTAAGCCATCGCCTG
TCATCTGTGCGTTGCGCCGACTTGGGCTTGGGACCTCTTTCGCCATCTGTTATTCAGCGCTGCT
GACCAAGACAAACTGCATTGCTCGCATCTTCGATGGGGTCAAGAACGGCGCTCAGAGGCCGAAA
TTCATCAGCCCCAGTTCTCAGGTTTTTATTTGCCTGGGTTTGATACTGGTGCAAATTGTGATGG
TGTCCGTGTGGCTTATCCTGGAGACTCCAGGTACTAGAAGATACACCCTTCCAGAGAAGCGGGA
AACAGTCATCCTGAAATGCAATGTCAAAGATTCCAGCATGTTGATCTCTCTGACCTATGACGTG
GTCCTGGTGATCCTATGCACTGTGTATGCCTTCAAAACGAGGAAGTGTCCTGAAAACTTCAATG
AAGCCAAGTTTATAGGCTTCACCATGTACACCACCTGCATCATCTGGTTGGCATTCCTCCCTAT
ATTTTATGTGACATCAAGTGACTACAGAGTGCAGACGACAACAATGTGCATCTCCGTTAGCCTG
AGCGGTTTCGTGGTCTTGGGCTGTTTGTTTGCCCCCAAGGTGCACATCGTCCTGTTCCAACCCC
AGAAGAATGTGGTCACACACAGACTTCACCTCAACAGGTTCAGCGTCAGCGGAACTGCAACCAC
CTATTCTCAGTATCCTCCTTCCAAAGCAAGGCCATATCCGGAAGCCCAACCAACACCACAGCAT
CACAGCACCAAGAGACAAGCCTCTGCAAGCACATATGTCCCAACAGTGTGCAACGGAAGGGAAG
TCCTGGACTCCACCACCTCATCTCTGTGATTGTGATACGCAGTTCAGTTCTCATGTTTTTAGGC
TGTTAGACAAAGTGCTCACATGCTGCTCCAGAACATGGAAACAGAACAAAACAACAACCCTAGT
ATCTTTTTTTTTCTTTTTTTAGAAACAGTACAATAAATTATTTTTGAGGACTGTATGGTATGTA
GTGATGTGCTACAACTTTCTAGGCTGATTTTAGTGCCCTAATTAACAGCCCCTTCCCCAGGACA
TGGAAATAACCATTGTTTACAGAGCTGAGCATTGGTGACAGGGTCTGACAGGGTCAGTCTACTA
AAACGAAAAACAAAAAAGACAAAACAAAAAAAAATACAGTGGCAATATTAGGTAACCTTTTTTC
CTATGAAGTCTTTTGTAGGTTCTTGTTGTAACTAATTTAGGGTGAGTTTCTACGTTGTATATTA
AAGTTACATTACGTGTAACGGAGCGTTTTTCTCAGTACAAAATAAAAAAGCATCTGTGTTAATG
TCAAGATAATGGGAATAAAACCTTCAAGGTTTTCAAGCATGGTGGATAATGGTTTATACTTTTG
GATCACTCAAGGTAATTTGAATATGTAGCCATCAAGTCACCTTCTCTTGTTAATGCTGGAAGTA
ATTGTCTAACTGCGCTTTTCTTCACACACATATTTTGAATCAGATTCGAGCCCCGAGAGAGGGT
TGTGAGCAGAATCCCACTTTTCTACAGATCGGAGGGATGAGAAATTGGCAAGGGGTGACACCTT
AAACTTAAGACCAGCTCATGATAATATAGACATATTATCTTTTCAAAGCTAGGTCAGTGGGATA
ACCCAGAACTGCCAAGTAAGGGAAAGTCTTCTCTGGATCCTGAATAGAGACTTGCGACCTGCCA
GCAAAGATTTGATGGCTCCGATGTTCAAAACAGTCAGAATGACTAGAAAGGAGGCTGGAAGGCA
TCTAATAATCCCATTGGGGAACTGCTTTTGCCCTTGACAGATGAAGGGCGACGTAAAAATCCTG
TTGAACTTACTTCCCACGGCTTTCCCAAGTCCTAGGAATGATGTTCCAGCACACAGACGTGTCA
TTACATTTAAATATTTTATTAACCCAAAACAAGTCATGAATGGTATGAGTAAGACAAAACTTCA
TTAATCTTACTAAATATTGTCCTGCTTCTATCAAACTTTTGGTTACAAATAATTTATCAATGTT
GGGTTAAATATTGACCAACACATCTATCTGTAAAACCTATGTCACATACAGGGCAGGAAGTACC
TTTGTTTCCTGTGATTATGGGGGGGGGGGGGAAATGTTATAATGTATGTGGCTTAAAACAACAA
AAATTTATTCTTTCACAATGAAGGAGTCAGAAGGACCAGGCTGCCTTATAGATTCAAAGAAATC
ACCCACCCCATCTTTTTTCTAGCACCTGGTAGTTACACAGCTCCTTGGCCTATGGCCACATCAT
TTCAAACTCTGTCCAGTCTTCATATCATATTCACCACTGTGTCTGTCTTGTCTTTTGTCTCTTG
AAATGCCATGTGTCATTAGATTTAGAATGACCTAGATAACCCAGGATGCTTATATCTTGACATT
TTTAATAGGTCATTTGTTTGAAGTTTTTTTGTTGTTGCTGTTTTCTTTTGTTCATTTTGGTGTT
TGTTTTGATTTGATTTGATTTTAAAATAAAAGAGTGTTCTCAGGGTTCAGGAACTAGGATGTGA
CATATTTTTGAGAGGCCGCTATTTAGCCCACAATAGAAGGACAAATGAGGTATAGTCCATCTAG
TTCCTGCGTTTGAAAAGCACAAACTATCGATGTGGTGATAAGTCAATTGGTGTTTGCTTTGCAT
GCACGAGAAAATAGTTTGAAAAGCAGTCAAGAACGACTGAGAAAGGAATGAAGTATAGAATTAA
ATGTATGAGAGTATTTGAAATGAGTAAGCCATAATAATACTATTTTTAGTAATCTAAAAAGAAT
GAACAGGGGCTCAAAGGCCAAGGAGATTGGCCTTGAAGGAAATGGGAAGCTAAATTCTTCTGTC
TGCATTTGAATGTGCAACCTAAGAAATCCAGCTCTCGCCAACCAGAGGAAGAAAACTGTGGTCC
GGAGCACTCCTTGAATTCTCATACTCAAGTAAGAATCTGAAATCTGGGGAGTGAGCTAGTGTAG
GTTGAGTAACGAATTCAAAGGCGCTAAATAGCACAAGAAATTCCACTCTGACTGCGATTGGCAA
GGGTGCCTGAGAAGCAGGCTCTGGATGAGCATCTGCTTGGGACAGTGGCTCAGCAAGCTGATGA
GAGAGAAAACAAACTCCGTTCCCTGATGGAATGGGACAGTCCGAGGACAGCAATATCAGATAGG
CTGTTCAGAGGTGCAGCTGACGCCTCTCACAGTCAAGCTGATCATGGATCTTAAAGCAAGACAA
TCAGCTCGTGTCTAAACCATGAGAAAACTGTAGTTTGGAGGGCTGGGTTTTTATACTCGCTGTG
TTTTATATCCTGTCAGTATACTAAAAATGCAGTAACAGGCAGCTCTTGTCATTCTTCTCTACCC
TTGATATAGACTTCGTTTTTTAATTAGAAATTTCATCTACCATATGATCCCTAGAAATAATTTT
TATGAACATTCAACATATGTATGGAAAATAGATGTGATTAAAAAATCACTTTTATATAAGCCAT
TAAAAAATAGTTTTGGAAGCCTTGTTTCCCCCACATTAGTAACAACATTTCATCCTGCCAGAAG
GTAATGCAGATTGATTCATCTCTGCAAAATGTCCCTAAATTTAAGAATTCCCATGCTAAAATGA
TAGATCCTATTCATAAAAGGAACTTTTAGAAGCAAGCTAACTGCTTGCCTTGTGTTTCTGAATA
GTTACTGTACTCTATGTCTTCTCACGCTTAAATATTAATAGATTTTTCCGCCCACCCAAGTTTA
GCTTGGTGAAGGAAAACTGTTACTATTTTTACAGTGCGAGGCAAGCCGGCTTCTGGACAACACC
GAGGACAGATGTAAAGAATGACTGAGAAAGGTAATCTCTGTCTTTACAGGCTTTGGGTGCACAT
GTTCTCTCAGCTAGGACCTGCATCATCCACTTCCTCATTGTGAGCATTTTGAATCCAGTAGCCT
GTCTGTGTGAGAAAATGTGAAAGGCCAGGAAGAGAGGTGTGAACTACCCACCCGTGGGTGACAC
CATTAACCCTCCTTTTCTGCAGTAGCAGGCTTGGCTTTACATAATTCTTATTGGGTTCCCCTTT
TTATTTAGAAAGCAGCCAATAGGATTTAAATCAGCTATCTGACATAGAGGAAAGATTGCTCAAT
CGTTTGCCAAAACTCCTAAGGTATTTTAAATAGAAGCCTCTCTCCGGGAGTTAATACAATGAAG
AAAAATCCAGCTAACTAAGGTCTTAATGGACATTTCATTCAAAGAAACTGGAGGTTTTGGTGAG
CCAGCAATCGTTAAAGGAAAGCTAAATGCCACTTGCAGTTTCATATTGAAACTGGACCTGGTAA
ATGGGTGAGCGCTGAGGTCACCCTACGTGAACAGATGCTATAAGTAAGCGGGGAAGCCTCTCTA
GTACCCCATCTTTATCTATACTACTTTGTACATCAGCATCTCGCCCTCAGAAGGTATCTAACAT
ATCAATATGAGAATACAAATATTAGCAGCACATTTTACACTAACCAAGCAACTAGGTTTTATGA
GGAAAATAGGAACATTGGCCATTAGGGATGACCGTGAACCATGGGAAACACTGTTACCTATGGC
ATCAAACAACTCTTGGCCAGAAGAAACATAAAGCAAACCAGCTGTTACTCAGCACCTGAGAACC
CAGATAATGAATAACTGGTCTCAAGTAATTCTTCCAGCACACTAACTTAAACCATCATTTTAGG
GGAGAAAAATAATGACAGAAGTCTACACAAAAGTACAATGAAATATGTTTAATCCTAAGAAGGA
TATGATTATTAGTAACCAAAGACGGGAAAGGTCAATAATAATAAAATTCAGTATTTTAAATCAA
GTGACTATATACCAAATTGCTTGACATTGGCAAATAGCATAATATAACTTATCCATAGACGACA
TGTTCTCATCCAGTAGAAAATTGACTTAAATATGTTTTGACACAGTGCTAAGAGATGTTATACA
CAACAGATGACTTAATGAACTATTTAAGGCTCAAAAGTATGCCTTTTAGAAGAAAAGTAATAAA
TAATGTATTTTTCTATCACTAGTAGTGATGGGGAGAGGACATGTCAATAAATCATAAAAGCGGA
ATGATTTGATTATAGCTTTCAACATTTCACTGGGCTTGTCAAAGGCCATACATAAAACTAAACA
GAATTTTACAGCTAGAATTGTTCTGCATATTCTCCTCATAATGTTCTGTCATAGTTCTTCAGCT
CTTAGAATAAAATGACGAGCCATGGGAATCCAAAGATGGGACCGAGCTGACAAAAAAAAATCTA
TTTAATATCTAAAATTAGAAATAAAATAACTTCTTCAATATCTACTGCATTTTCAGAGAGTTCA
TTAAAATTTAAGGCATTTTTGACATGTCAGAGATTTTAGTCCAGTGACAAGAGAAAGAAGAAGA
ACCTGGGAACAAATCCCAATTATTTCTATGGCTTGGAACATACATGTTGAGCACAGCAGAGGGT
GAAGAGGGGTGACAGGTGACAGAAGATGCTTTCTGACTCTGTCCAGTCTACGTTTCCACCTGTT
CCTCTAAGTGGTAGTTCAAGTGTATTCCCACTCTTCTGGTTAAATTTTGATTATGATAGGGAAA
GGCATGCCAATATTCTGATATTGAGACAAAAATGAGCAAAGCTAAAATAATTTAGGATATTCAA
GAAATTAAATACAAAATTATGCTAAGTAACATTCTTTTCAGTCTTACGACAAACAATAATACAT
CACCTATTTTCATATTTAGTAGTAGATACATACATACACACATACATATACACATGTACATACA
CACACACACACACACACACACACACACACACACACACAAAACACACACATACAACCATTCTTTT
AGTGGTAGCAAAAAGGTCTAGTGGTTTACCCACTGGCCAATAAGCACAATTATTCATTTATTCA
TTTTCTCCCATTTTTCACAAAAATAAAGACTACATCACCCACAAAAATCAAACATTACAAGCAC
TGAAACACCTCAGGCAAAACACATGGTGGAAACCTTACCCGTATGCTTTGCCCGCTGCAGCCCA
TCAAAAATCTTTTTAAGTATGTGGTTAAGGTCTGTAAAGATTATTGGTTTATTAGAAACAAACC
AAAACATCTTATATCAGGAATGGGTAAGACACTCTAATTCCCAGGTCTAAAAAGTTTACACAAA
CTTGATCAAATTCATCACCAAACTTCCTTCAAAAGTAATATCCAAGTCACAATGATACTCATAA
TCCACTGTGAGAAATGTCACAAGTTTCTGGGTTGCTTTCGAACAGGAACGACACATTGCTCAGA
AGGATCTGACTGTGAATACAGGTATCCGCACTTCAAAAATTGAATTTCTCCCTTATTGGCTTAA
AAATAAAATCTTCAAGATATTTATAATCCTCAAAGTCTTCTAGCAAGGGAAAAATAGACACCTC
TAGCACTCTGGGTGGTGCCTGATGTCGAGGGAAAGCCCAGCTGACACTTGGTATGACCTTCGGT
TACCCGGACAAGTAGAGCTTTCTGTGCTTAGGGTCAAGCACTCCCTCTCCTTTCTTATGACTGT
GCAGGGGTCTGCAAAATAGGGTACTACCCAAGCTTTAGTCTATATTGACACTCAAGTGCTTTAA
GCCTCTGACTCCTGATAAAGCCAGTTTGTTTGAATGAATGGAATATTGAGCTTTCTTCTTGGCT
TTTATTGCCTCCCACCCCATCCCATGAGATGACTTCAAGCAATTACTTAAATTTTTTCATACTA
GTTCCAACAAGGAAAGAAGTTTTTAAAAGTGATTACCACCTTAGATAACCCAAGTAAGTAACTT
CACAAAATATTACTAATATCCTAGTCTTTCTGAAGTCAAGAGAAAATACCCTATGAAAATTTAT
TGTCTTTCATTTTGCTCATCATTTCAATTTTAAAAAAAAGATGTTTTCAAGTCTTGGAGAAATA
AAGGCAAAAATAATTATAACTTAATTTTTCCCCCAAATCTTCCCCAAAGTACAAGAACAAGACA
TATGTGGAAACACAAGGCGTATGCTTATGTCTGCCTTCCAACACATATTTTGTATGTAGACGGT
ATAAAGAATTAAAGTTACCCAGTAATAGTATGGCATGCATCAGCAGTGCATTGGTGGGCTAAAA
CTTGGATTTCAGTCATGAGTATATACAGCTAAATCGCTTCCTGAGTTAAGCTTCATCTTCAGTG
AGACCCACATCATCTGTCTTCTGTAGTTTGACAAAGTATGTGACGTGTTATAAGGCAATCAGCA
GTTTTGCCTACTCCTCTCGCTGGCACACCACCTCGGTGAGATCACAGCCATGTCAGGTGTGAGG
ACAAGTCCTAATGGGGGTCCTGAATGCTACAGCATTGTCTCTTCATATATTGGGGCATCTTGAG
GATTTCAGCTGAACAGATTCAAAGTGGTCGTCTTTTTCCTAAGGGGGAAAAACAAAATAAAATC
AGCTCACTGAAATGCCAATAACATTTTAGGATTTGGCTTGCCAAAACAAAAGTTCCCCAAACTA
CTTTAACCTATGAGCCTGCCACTTACAATTAGGAGTTTACAGTTAAAGTAAGGTGGAAAATACA
GCAAACAGTGTATGTACCCCGAAGGATAATTTTGATGCCCAAGTGATAAGACAGACAACTCCAA
AATAGAAACAAACACAAGATTGAGCAGATATCAGAAGATGTGGCTGTGATTTTTTTTTTTTAAG
AAAAAAGCCAAGGAGACTTTCTCTGAGGACACACACGACCTTGGATCAGTGACCTTGACGTATA
GTTGTGGGCAAAAGAGAACTGGCAGACATTCATGTCTGATAACAGGCTGTATAGTAAGAAAAGT
AACAGCCAAAATGAGTTGTCAATTTATATGTTTTAGGGTATTGTTGTGTGCCTATGCCTACTAA
AAAACGTTAAAGACACCATATAAGGTAATAGATCAGATGTTTAATTCAAACTGGCTTATATAAG
AAACCCAAAGAGGAGTCTTTAATATGGCAAAAGAGAAATAGGAGGCTGAATATGTGTGAATGTT
GAATGTTTTACTCATTAAATACAGAAAAAGTTTTTAAAGCTGTATGGAATAGGAAAATTAGAAA
AGAAAATGTTAGGTTAAGTTAGGTTAGGGTTAGGTAAGATAGCCCACCAGGGAGAAAAAGACTT
GGCACCAAGTCAAACAGCCTATGTTCATGCCCCAGAAACCTTGTAGTGGAAGGAGGAAAAGTAA
TTCCACAATTAGTCTTCTACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACATACTATGACAGATGAAATTAATTAATTTATAATAGAAAATATGTGTAGCTCAG
TAATGGGGAACTCACCCAGCATATGGGGAGCCCTAGAATTCTTCCCTTAGCTTGACTGGGGAAA
AGGAA

hide sequence

RefSeq Acc Id:

XM_039107009 ⟹ XP_038962937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,801 (+)	NCBI

RefSeq Acc Id:

XM_039107010 ⟹ XP_038962938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,801 (+)	NCBI

RefSeq Acc Id:

XM_039107011 ⟹ XP_038962939

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,801 (+)	NCBI

RefSeq Acc Id:

XM_039107012 ⟹ XP_038962940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,801 (+)	NCBI

RefSeq Acc Id:

XM_039107013 ⟹ XP_038962941

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,564,233 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,345 (+)	NCBI

RefSeq Acc Id:

XM_039107014 ⟹ XP_038962942

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,219 - 25,600,721 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,643,972 (+)	NCBI

RefSeq Acc Id:

XM_039107015 ⟹ XP_038962943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,222 - 25,564,397 (+)	NCBI
mRatBN7.2	4	24,364,854 - 24,609,770 (+)	NCBI

RefSeq Acc Id:

XM_063285521 ⟹ XP_063141591

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,222 - 25,564,397 (+)	NCBI

RefSeq Acc Id:

XM_063285522 ⟹ XP_063141592

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	25,319,218 - 25,564,397 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001099182	(Get FASTA)	NCBI Sequence Viewer
	XP_008760904	(Get FASTA)	NCBI Sequence Viewer
	XP_038962937	(Get FASTA)	NCBI Sequence Viewer
	XP_038962938	(Get FASTA)	NCBI Sequence Viewer
	XP_038962939	(Get FASTA)	NCBI Sequence Viewer
	XP_038962940	(Get FASTA)	NCBI Sequence Viewer
	XP_038962941	(Get FASTA)	NCBI Sequence Viewer
	XP_038962942	(Get FASTA)	NCBI Sequence Viewer
	XP_038962943	(Get FASTA)	NCBI Sequence Viewer
	XP_063141591	(Get FASTA)	NCBI Sequence Viewer
	XP_063141592	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL84305	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007572
	ENSRNOP00000007572.6
	ENSRNOP00000069396
	ENSRNOP00000096683
GenBank Protein	P31422	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001099182 ⟸ NM_001105712
- Peptide Label:	precursor
- UniProtKB:	P31422 (UniProtKB/Swiss-Prot), A6K223 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKMLTRLQILMLALFSKGFLLSLGDHNFMRREIKIEGDLVLGGLFPINEKGTGTEECGRINEDR GIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCP DGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSY DSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGA ITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNY EQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKEYLLKINFTAPFNPNK GADSIVKFDTFGDGMGRYNVFNLQQTGGKYSYLKVGHWAETLSLDVDSIHWSRNSVPTSQCSDP CAPNEMKNMQPGDVCCWICIPCEPYEYLVDEFTCMDCGPGQWPTADLSGCYNLPEDYIKWEDAW AIGPVTIACLGFLCTCIVITVFIKHNNTPLVKASGRELCYILLFGVSLSYCMTFFFIAKPSPVI CALRRLGLGTSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVS VWLILETPGTRRYTLPEKRETVILKCNVKDSSMLISLTYDVVLVILCTVYAFKTRKCPENFNEA KFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIVLFQPQK NVVTHRLHLNRFSVSGTATTYSQSSASTYVPTVCNGREVLDSTTSSL hide sequence

RefSeq Acc Id:	XP_008760904 ⟸ XM_008762682
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GM70 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKMLTRLQILMLALFSKGFLLSLGDHNFMRREIKIEGDLVLGGLFPINEKGTGTEECGRINEDR GIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFVRASLTKVDEAEYMCP DGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVP PDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSY DSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGA ITLELASHPVRQFDRYFQSLNPYNNHRNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNY EQESKIMFVVNAVYAMAHALHKMQRTLCPNTTKLCDAMKILDGKKLYKEYLLKINFTAPFNPNK GADSIVKFDTFGDGMGRYNVFNLQQTGGKYSYLKVGHWAETLSLDVDSIHWSRNSVPTSQCSDP CAPNEMKNMQPGDVCCWICIPCEPYEYLVDEFTCMDCGPGQWPTADLSGCYNLPEDYIKWEDAW AIGPVTIACLGFLCTCIVITVFIKHNNTPLVKASGRELCYILLFGVSLSYCMTFFFIAKPSPVI CALRRLGLGTSFAICYSALLTKTNCIARIFDGVKNGAQRPKFISPSSQVFICLGLILVQIVMVS VWLILETPGTRRYTLPEKRETVILKCNVKDSSMLISLTYDVVLVILCTVYAFKTRKCPENFNEA KFIGFTMYTTCIIWLAFLPIFYVTSSDYRVQTTTMCISVSLSGFVVLGCLFAPKVHIVLFQPQK NVVTHRLHLNRFSVSGTATTYSQYPPSKARPYPEAQPTPQHHSTKRQASASTYVPTVCNGREVL DSTTSSL hide sequence

Ensembl Acc Id:

ENSRNOP00000069396 ⟸ ENSRNOT00000089747

Ensembl Acc Id:

ENSRNOP00000007572 ⟸ ENSRNOT00000007572

RefSeq Acc Id:	XP_038962942 ⟸ XM_039107014
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038962937 ⟸ XM_039107009
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GM70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962938 ⟸ XM_039107010
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GM70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962939 ⟸ XM_039107011
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GM70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962940 ⟸ XM_039107012
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GM70 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962943 ⟸ XM_039107015
- Peptide Label:	isoform X3
- UniProtKB:	P31422 (UniProtKB/Swiss-Prot), A6K223 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962941 ⟸ XM_039107013
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2JV93 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000096683 ⟸ ENSRNOT00000109555

RefSeq Acc Id:	XP_063141592 ⟸ XM_063285522
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063141591 ⟸ XM_063285521
- Peptide Label:	isoform X3
- UniProtKB:	P31422 (UniProtKB/Swiss-Prot), A6K223 (UniProtKB/TrEMBL)

Protein Domains

G-protein coupled receptors family 3 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P31422-F1-model_v2	AlphaFold	P31422	1-879	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2744	AgrOrtholog
BIND	144396
BioCyc Gene	G2FUF-45851	BioCyc
Ensembl Genes	ENSRNOG00000005519	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000007572	ENTREZGENE
	ENSRNOT00000007572.8	UniProtKB/Swiss-Prot
	ENSRNOT00000089747	ENTREZGENE
	ENSRNOT00000109555	ENTREZGENE
Gene3D-CATH	2.10.50.30	UniProtKB/Swiss-Prot
	3.40.50.2300	UniProtKB/Swiss-Prot
InterPro	ANF_lig-bd_rcpt	UniProtKB/Swiss-Prot
	GPCR_3	UniProtKB/Swiss-Prot
	GPCR_3_9-Cys_dom	UniProtKB/Swiss-Prot
	GPCR_3_9-Cys_sf	UniProtKB/Swiss-Prot
	GPCR_3_C	UniProtKB/Swiss-Prot
	GPCR_3_CS	UniProtKB/Swiss-Prot
	GPCR_3_mtglu_rcpt	UniProtKB/Swiss-Prot
	GPCR_3_mtglu_rcpt_3	UniProtKB/Swiss-Prot
	mGluR	UniProtKB/Swiss-Prot
	Peripla_BP_I	UniProtKB/Swiss-Prot
KEGG Report	rno:24416	UniProtKB/Swiss-Prot
NCBI Gene	24416	ENTREZGENE
PANTHER	METABOTROPIC GLUTAMATE RECEPTOR	UniProtKB/Swiss-Prot
Pfam	7tm_3	UniProtKB/Swiss-Prot
	ANF_receptor	UniProtKB/Swiss-Prot
	NCD3G	UniProtKB/Swiss-Prot
PhenoGen	Grm3	PhenoGen
PRINTS	GPCRMGR	UniProtKB/Swiss-Prot
	MTABOTROPC3R	UniProtKB/Swiss-Prot
	MTABOTROPICR	UniProtKB/Swiss-Prot
PROSITE	G_PROTEIN_RECEP_F3_1	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F3_2	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F3_3	UniProtKB/Swiss-Prot
	G_PROTEIN_RECEP_F3_4	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000005519	RatGTEx
Superfamily-SCOP	SSF53822	UniProtKB/Swiss-Prot
UniProt	A0A0G2JV93	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GM70	ENTREZGENE, UniProtKB/TrEMBL
	A6K223	ENTREZGENE, UniProtKB/TrEMBL
	GRM3_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Grm3	glutamate metabotropic receptor 3	Grm3	glutamate receptor, metabotropic 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-03-29	Grm3	glutamate receptor, metabotropic 3	LOC689135	similar to Metabotropic glutamate receptor 3 precursor (mGluR3)	Data merged from RGD:1596169	737654	PROVISIONAL
2013-03-29	Grm3	glutamate receptor, metabotropic 3	LOC689121	hypothetical protein LOC689121	Data merged from RGD:1596183	737654	PROVISIONAL
2006-11-20	LOC689135	similar to Metabotropic glutamate receptor 3 precursor (mGluR3)			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC689121	hypothetical protein LOC689121			Symbol and Name status set to provisional	70820	PROVISIONAL
2002-11-06	Grm3	glutamate receptor, metabotropic 3		Glutamate receptor, metabotropic 3	Name updated	625702	APPROVED
2002-06-10	Grm3	Glutamate receptor, metabotropic 3			Symbol and Name status set to approved	70586	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_transcript	mRNA downregulated in frontal cortex of AA rat strain compared to ANA rat strain	1358772

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)