Efnb1 (ephrin B1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Efnb1 (ephrin B1) Rattus norvegicus
Analyze
Symbol: Efnb1
Name: ephrin B1
RGD ID: 2540
Description: Predicted to enable ephrin receptor binding activity. Involved in presynapse assembly. Located in synapse. Is active in glutamatergic synapse and presynaptic membrane. Human ortholog(s) of this gene implicated in craniofrontonasal syndrome and dysostosis. Orthologous to human EFNB1 (ephrin B1); PARTICIPATES IN altered ephrin - ephrin receptor bidirectional signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: EFL-3; ELK ligand; ELK-L; EPH-related receptor tyrosine kinase ligand 2; ephrin-B1; LERK-2; LERK2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X68,297,529 - 68,310,335 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX68,297,492 - 68,349,546 (+)EnsemblGRCr8
mRatBN7.2X64,257,351 - 64,270,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX64,257,351 - 64,270,157 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX65,740,847 - 65,753,653 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X69,241,199 - 69,254,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X66,802,140 - 66,814,947 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X68,891,227 - 68,904,034 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX68,891,227 - 68,904,038 (+)Ensemblrn6Rnor6.0
Rnor_5.0X69,764,314 - 69,777,121 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X87,163,176 - 87,175,982 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX64,624,957 - 64,637,749 (+)NCBICelera
RGSC_v3.1X87,236,467 - 87,249,273 (+)NCBI
Cytogenetic MapXq22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (EXP)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[b]fluoranthene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP,ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
camptothecin  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
chrysene  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
Cuprizon  (EXP)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
fenthion  (ISO)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
glyphosate  (EXP)
indometacin  (ISO)
isobutanol  (ISO)
leflunomide  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
maneb  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methamphetamine  (EXP)
methidathion  (ISO)
methotrexate  (ISO)
nitrofen  (EXP)
Nutlin-3  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paraquat  (ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
SCH 23390  (EXP)
sodium arsenite  (EXP,ISO)
Soman  (EXP)
tetraphene  (ISO)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cell surface  (IEA,ISO)
cytoplasm  (IEA,ISO)
glutamatergic synapse  (IBA,IDA,IMP)
membrane  (IEA)
membrane raft  (IEA,ISO)
nucleus  (IEA,ISO)
plasma membrane  (IBA,IEA,ISO)
presynaptic membrane  (IBA,IDA)
synapse  (IDA)

Molecular Function
ephrin receptor binding  (IBA,IEA,ISO,TAS)
protein binding  (IPI,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. LERK-2, a binding protein for the receptor-tyrosine kinase ELK, is evolutionarily conserved and expressed in a developmentally regulated pattern. Fletcher FA, etal., Oncogene 1994 Nov;9(11):3241-7.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Expression profile of EFNB1, EFNB2, two ligands of EPHB2 in human gastric cancer. Kataoka H, etal., J Cancer Res Clin Oncol. 2002 Jul;128(7):343-8. doi: 10.1007/s00432-002-0355-0. Epub 2002 Jun 26.
5. Ephrin-B1 and ephrin-B2 mediate EphB-dependent presynaptic development via syntenin-1. McClelland AC, etal., Proc Natl Acad Sci U S A. 2009 Dec 1;106(48):20487-92. doi: 10.1073/pnas.0811862106. Epub 2009 Nov 13.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Ephrin-B1 promotes dendrite outgrowth on cerebellar granule neurons. Moreno-Flores MT, etal., Mol Cell Neurosci 2002 Jul;20(3):429-46.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
15. The role of ephrins and Eph receptors in cancer. Surawska H, etal., Cytokine Growth Factor Rev 2004 Dec;15(6):419-33.
16. PDZ proteins bind, cluster, and synaptically colocalize with Eph receptors and their ephrin ligands. Torres R, etal., Neuron. 1998 Dec;21(6):1453-63.
17. Mutations of the ephrin-B1 gene cause craniofrontonasal syndrome. Wieland I, etal., Am J Hum Genet. 2004 Jun;74(6):1209-15. Epub 2004 Apr 29.
Additional References at PubMed
PMID:10197531   PMID:10558890   PMID:11731465   PMID:14988728   PMID:15037550   PMID:15502157   PMID:15599401   PMID:16052680   PMID:17667985   PMID:18321739   PMID:18448254   PMID:19056867  
PMID:19515908   PMID:20633976   PMID:23376485   PMID:23881165   PMID:25922200   PMID:29602834   PMID:33356837  


Genomics

Comparative Map Data
Efnb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X68,297,529 - 68,310,335 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX68,297,492 - 68,349,546 (+)EnsemblGRCr8
mRatBN7.2X64,257,351 - 64,270,158 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX64,257,351 - 64,270,157 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX65,740,847 - 65,753,653 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X69,241,199 - 69,254,005 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X66,802,140 - 66,814,947 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X68,891,227 - 68,904,034 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX68,891,227 - 68,904,038 (+)Ensemblrn6Rnor6.0
Rnor_5.0X69,764,314 - 69,777,121 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X87,163,176 - 87,175,982 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX64,624,957 - 64,637,749 (+)NCBICelera
RGSC_v3.1X87,236,467 - 87,249,273 (+)NCBI
Cytogenetic MapXq22NCBI
EFNB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X68,829,021 - 68,842,160 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX68,828,992 - 68,842,160 (+)Ensemblhg38GRCh38
GRCh37X68,048,864 - 68,062,003 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X67,965,556 - 67,978,728 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34X67,831,851 - 67,845,023NCBI
CeleraX68,401,732 - 68,414,899 (+)NCBICelera
Cytogenetic MapXq13.1NCBI
HuRefX61,874,538 - 61,887,692 (+)NCBIHuRef
CHM1_1X67,941,979 - 67,955,149 (+)NCBICHM1_1
T2T-CHM13v2.0X67,262,362 - 67,275,507 (+)NCBIT2T-CHM13v2.0
Efnb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X98,179,667 - 98,192,628 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX98,179,736 - 98,192,597 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38X99,136,061 - 99,149,022 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX99,136,130 - 99,148,991 (+)Ensemblmm10GRCm38
MGSCv37X96,331,469 - 96,344,330 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X95,338,849 - 95,351,710 (+)NCBIMGSCv36mm8
CeleraX86,077,235 - 86,090,145 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.22NCBI
Efnb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554758,360,465 - 8,373,578 (+)Ensembl
ChiLan1.0NW_0049554758,360,504 - 8,372,431 (+)NCBIChiLan1.0ChiLan1.0
EFNB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X68,484,373 - 68,497,581 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X68,488,001 - 68,501,112 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X58,075,744 - 58,088,838 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X68,139,078 - 68,152,127 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX68,139,078 - 68,152,131 (+)EnsemblpanPan2panpan1.1
EFNB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X53,292,407 - 53,303,824 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX53,292,565 - 53,304,600 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_TashaX44,117,929 - 44,130,926 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X54,257,764 - 54,270,762 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX54,257,610 - 54,436,363 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X52,225,889 - 52,238,885 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X53,554,687 - 53,567,686 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X53,478,390 - 53,491,387 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Efnb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X48,786,595 - 48,799,574 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936777434,692 - 447,780 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936777434,729 - 447,778 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EFNB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX54,948,342 - 54,973,629 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X54,947,339 - 54,961,403 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X62,073,418 - 62,080,778 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EFNB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X58,668,572 - 58,681,583 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX58,668,581 - 58,681,855 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666065523,181 - 536,271 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Efnb1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248911,394,852 - 1,407,959 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248911,394,948 - 1,407,898 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Efnb1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X57,134,561 - 57,147,507 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Efnb1
18 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:457
Count of miRNA genes:238
Interacting mature miRNAs:305
Transcripts:ENSRNOT00000009635
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat

Markers in Region
AA964352  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X64,269,831 - 64,270,039 (+)MAPPERmRatBN7.2
Rnor_6.0X68,903,708 - 68,903,915NCBIRnor6.0
Rnor_5.0X69,776,795 - 69,777,002UniSTSRnor5.0
RGSC_v3.4X87,175,656 - 87,175,863UniSTSRGSC3.4
CeleraX64,637,423 - 64,637,630UniSTS
Cytogenetic MapXq22.1UniSTS
EFNB1_609  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X64,268,788 - 64,269,460 (+)MAPPERmRatBN7.2
Rnor_6.0X68,902,665 - 68,903,336NCBIRnor6.0
Rnor_5.0X69,775,752 - 69,776,423UniSTSRnor5.0
RGSC_v3.4X87,174,613 - 87,175,284UniSTSRGSC3.4
CeleraX64,636,394 - 64,637,065UniSTS
Cytogenetic MapXq22.1UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 87 59 6 351 187 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009635   ⟹   ENSRNOP00000009635
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX68,297,529 - 68,310,335 (+)Ensembl
mRatBN7.2 EnsemblX64,257,351 - 64,270,157 (+)Ensembl
Rnor_6.0 EnsemblX68,891,227 - 68,904,038 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000167195   ⟹   ENSRNOP00000112168
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX68,297,492 - 68,315,777 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171080   ⟹   ENSRNOP00000104037
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX68,297,492 - 68,349,546 (+)Ensembl
RefSeq Acc Id: NM_017089   ⟹   NP_058785
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X68,297,529 - 68,310,335 (+)NCBI
mRatBN7.2X64,257,351 - 64,270,158 (+)NCBI
Rnor_6.0X68,891,227 - 68,904,034 (+)NCBI
Rnor_5.0X69,764,314 - 69,777,121 (+)NCBI
RGSC_v3.4X87,163,176 - 87,175,982 (+)RGD
CeleraX64,624,957 - 64,637,749 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_058785 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA53092 (Get FASTA)   NCBI Sequence Viewer  
  AAH61744 (Get FASTA)   NCBI Sequence Viewer  
  EDL95949 (Get FASTA)   NCBI Sequence Viewer  
  EDL95950 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009635
GenBank Protein P52796 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058785   ⟸   NM_017089
- Peptide Label: precursor
- UniProtKB: P52796 (UniProtKB/Swiss-Prot),   Q6P7B6 (UniProtKB/TrEMBL),   F7FBR1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009635   ⟸   ENSRNOT00000009635
Ensembl Acc Id: ENSRNOP00000112168   ⟸   ENSRNOT00000167195
Ensembl Acc Id: ENSRNOP00000104037   ⟸   ENSRNOT00000171080
Protein Domains
Ephrin RBD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P52796-F1-model_v2 AlphaFold P52796 1-345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701859
Promoter ID:EPDNEW_R12383
Type:initiation region
Name:Efnb1_1
Description:ephrin B1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X68,891,221 - 68,891,281EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2540 AgrOrtholog
BioCyc Gene G2FUF-2152 BioCyc
Ensembl Genes ENSRNOG00000006877 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000009635 ENTREZGENE
Gene3D-CATH 2.60.40.420 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:5599058 IMAGE-MGC_LOAD
InterPro Cupredoxin UniProtKB/Swiss-Prot
  Ephrin UniProtKB/Swiss-Prot
  Ephrin-B_Ecto UniProtKB/Swiss-Prot
  Ephrin_CS UniProtKB/Swiss-Prot
  Ephrin_RBD UniProtKB/Swiss-Prot
MGC_CLONE MGC:72504 IMAGE-MGC_LOAD
NCBI Gene 25186 ENTREZGENE
PANTHER EPHRIN-B1 UniProtKB/Swiss-Prot
  PTHR11304 UniProtKB/Swiss-Prot
Pfam Ephrin UniProtKB/Swiss-Prot
PhenoGen Efnb1 PhenoGen
PRINTS EPHRIN UniProtKB/Swiss-Prot
PROSITE EPHRIN_RBD_1 UniProtKB/Swiss-Prot
  EPHRIN_RBD_2 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000006877 RatGTEx
Superfamily-SCOP SSF49503 UniProtKB/Swiss-Prot
UniProt A0ABK0LKK3_RAT UniProtKB/TrEMBL
  A0ABK0M1V9_RAT UniProtKB/TrEMBL
  EFNB1_RAT UniProtKB/Swiss-Prot
  F7FBR1 ENTREZGENE, UniProtKB/TrEMBL
  P52796 ENTREZGENE
  Q6P7B6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Efnb1  Ephrin B1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed in granule and Purkinje neurons 727396