Cd209fl1 (CD209f molecule like 1) - Rat Genome Database

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Gene: Cd209fl1 (CD209f molecule like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cd209fl1
Name: CD209f molecule like 1
RGD ID: 2324825
Description: Predicted to enable carbohydrate binding activity and pattern recognition receptor activity. Predicted to be involved in immune response. Predicted to be active in external side of plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD209 antigen-like protein E; LOC100363064; rCG58956-like; uncharacterized protein LOC100363064
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8127,223,998 - 7,226,919 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl127,223,997 - 7,227,070 (-)EnsemblGRCr8
mRatBN7.2122,426,148 - 2,429,043 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl122,426,421 - 2,428,961 (-)EnsemblmRatBN7.2
Dahl_SR_JrHsd128,068,826 - 8,071,763 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive128,470,757 - 8,473,694 (-)NCBILyon_Normotensive
Lyon_Hypertensive126,289,614 - 6,292,551 (+)NCBILyon_Hypertensive
F344_StmMcwi1217,870,010 - 17,872,947 (-)NCBIF344_StmMcwi
Rnor_6.0122,716,294 - 2,719,334 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,716,376 - 2,719,073 (+)Ensemblrn6Rnor6.0
Rnor_5.0124,869,110 - 4,872,319 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4121,716,771 - 1,719,390 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera124,245,526 - 4,248,406 (-)NCBICelera
Cytogenetic Map12p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cd209fl1
37 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:105
Count of miRNA genes:86
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000042857
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12592191825247790Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12115486827Rat
2306789Ean6Experimental allergic neuritis QTL 64.9nervous system integrity trait (VT:0010566)experimental autoimmune neuritis severity score (CMO:0001528)12129775522Rat
7204484Bp358Blood pressure QTL 3580.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)12124849755Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12141361854Rat
1357337Gluco3Glucose level QTL 30.0004adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)12116966671Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12348941648489416Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12138687564Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12274769447747694Rat
2303568Bw88Body weight QTL 883body mass (VT:0001259)body weight (CMO:0000012)12128606299Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12133700600Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12308718048087180Rat
61334Gluco17Glucose level QTL 176.3adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)12116966671Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)12138635130Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12128133365Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)12563330650633306Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)12128606299Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12111869600Rat
1331787Rf41Renal function QTL 412.998kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)12133700556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
4 10 29 45 25 24 5 12 5 6 81 57 30 8 47 19 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000042857   ⟹   ENSRNOP00000041477
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl127,223,997 - 7,227,070 (-)Ensembl
mRatBN7.2 Ensembl122,426,421 - 2,428,961 (-)Ensembl
Rnor_6.0 Ensembl122,716,376 - 2,719,073 (+)Ensembl
RefSeq Acc Id: NM_001431949   ⟹   NP_001418878
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd128,068,826 - 8,071,763 (-)NCBI
Lyon_Normotensive128,470,757 - 8,473,694 (-)NCBI
Lyon_Hypertensive126,289,614 - 6,292,551 (+)NCBI
F344_StmMcwi1217,870,010 - 17,872,947 (-)NCBI
RefSeq Acc Id: XM_039089888   ⟹   XP_038945816
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8127,223,998 - 7,226,919 (-)NCBI
mRatBN7.2122,426,148 - 2,429,043 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001418878 (Get FASTA)   NCBI Sequence Viewer  
  XP_038945816 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL74976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041477
  ENSRNOP00000041477.6
Ensembl Acc Id: ENSRNOP00000041477   ⟸   ENSRNOT00000042857
RefSeq Acc Id: XP_038945816   ⟸   XM_039089888
RefSeq Acc Id: NP_001418878   ⟸   NM_001431949
Protein Domains
C-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LYU9-F1-model_v2 AlphaFold F1LYU9 1-258 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324825 AgrOrtholog
BioCyc Gene G2FUF-20361 BioCyc
Ensembl Genes ENSRNOG00000001027 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000042857 ENTREZGENE
  ENSRNOT00000042857.6 UniProtKB/TrEMBL
Gene3D-CATH 3.10.100.10 UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin/snaclec_domain UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  CD209-like_CTLD UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
NCBI Gene 100363064 ENTREZGENE
PANTHER MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
PhenoGen Cd209fl1 PhenoGen
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000001027 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP SSF56436 UniProtKB/TrEMBL
UniProt A6KQ49_RAT UniProtKB/TrEMBL
  F1LYU9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Cd209fl1  CD209f molecule like 1  LOC100363064  rCG58956-like  Symbol and Name Changed 1299863 APPROVED
2010-05-12 LOC100363064  rCG58956-like      Symbol and Name status set to provisional 70820 PROVISIONAL