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Gene: Auts2 (activator of transcription and developmental regulator AUTS2) Rattus norvegicus

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Symbol:

Auts2

Name:

activator of transcription and developmental regulator AUTS2

RGD ID:

2323959

Description:

Predicted to enable chromatin binding activity. Predicted to be involved in several processes, including generation of neurons; positive regulation of Rac protein signal transduction; and positive regulation of lamellipodium assembly. Predicted to act upstream of or within innate vocalization behavior; positive regulation of transcription by RNA polymerase II; and righting reflex. Predicted to be located in actin cytoskeleton; growth cone; and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant intellectual developmental disorder 26. Orthologous to human AUTS2 (activator of transcription and developmental regulator AUTS2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

autism susceptibility candidate 2; autism susceptibility candidate 2-like; autism susceptibility candidate 2-like 1; AUTS2, activator of transcription and developmental regulator; Auts2l; Auts2l1; LOC100362819

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	29,739,138 - 30,830,386 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	29,740,523 - 30,830,386 (+)	Ensembl				GRCr8
mRatBN7.2	12	24,104,187 - 25,194,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	24,104,192 - 25,194,416 (+)	Ensembl				mRatBN7.2
Rnor_6.0	12	27,155,362 - 28,252,752 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	28,212,333 - 28,251,816 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	29,128,927 - 30,213,265 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	25,518,248 - 25,541,023 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
RGSC_v3.4	12	26,069,494 - 26,166,764 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	25,842,313 - 26,925,231 (+)	NCBI		Celera
RGSC_v3.1	12	25,934,719 - 26,030,511 (+)	NCBI
Cytogenetic Map	12	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Agenesis of Corpus Callosum (ISO)

autism spectrum disorder (ISO)

autosomal dominant intellectual developmental disorder (ISS)

autosomal dominant intellectual developmental disorder 26 (ISO,ISS)

autosomal dominant intellectual developmental disorder 57 (ISO)

cerebellar hypoplasia (ISO)

chromosome 15q11.2 deletion syndrome (ISO)

COVID-19 (ISO)

Developmental Disabilities (ISO)

Developmental Disease (ISO)

epilepsy (ISO)

exotropia (ISO)

genetic disease (ISO)

intellectual disability (ISO)

Multiple Congenital Anomalies/Dysmorphic Syndrome-Intellectual Disability (ISO)

Neurodevelopmental Disorders (ISO)

syndromic intellectual disability (ISO)

type 2 diabetes mellitus (ISO)

Weissenbacher-Zweymuller syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

chlordecone (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gallic acid (ISO)

inulin (ISO)

isoprenaline (ISO)

L-ascorbic acid (ISO)

L-methionine (ISO)

lead(0) (ISO)

menadione (ISO)

methapyrilene (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

nickel sulfate (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (EXP)

phenylephrine (EXP)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium dichromate (ISO)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

titanium dioxide (ISO)

topotecan (ISO)

trichloroethene (EXP)

trichostatin A (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (ISO)

axon extension (ISO)

dendrite extension (ISO)

innate vocalization behavior (ISO)

neuron migration (ISO)

positive regulation of lamellipodium assembly (ISO)

positive regulation of Rac protein signal transduction (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

righting reflex (ISO)

Cellular Component

actin cytoskeleton (ISO)

growth cone (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

chromatin binding (ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19948250	PMID:21873635	PMID:25519132	PMID:25533347

Genomics

Comparative Map Data

Auts2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	29,739,138 - 30,830,386 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	29,740,523 - 30,830,386 (+)	Ensembl				GRCr8
mRatBN7.2	12	24,104,187 - 25,194,123 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	24,104,192 - 25,194,416 (+)	Ensembl				mRatBN7.2
Rnor_6.0	12	27,155,362 - 28,252,752 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	28,212,333 - 28,251,816 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	29,128,927 - 30,213,265 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	25,518,248 - 25,541,023 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
RGSC_v3.4	12	26,069,494 - 26,166,764 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	25,842,313 - 26,925,231 (+)	NCBI		Celera
RGSC_v3.1	12	25,934,719 - 26,030,511 (+)	NCBI
Cytogenetic Map	12	q12	NCBI

AUTS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	69,598,475 - 70,793,506 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	69,598,296 - 70,793,506 (+)	Ensembl			hg38	GRCh38
GRCh37	7	69,063,461 - 70,258,492 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	68,702,255 - 69,895,790 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	68,508,969 - 69,702,505	NCBI
Celera	7	62,444,993 - 63,639,505 (+)	NCBI		Celera
Cytogenetic Map	7	q11.22	NCBI
HuRef	7	65,242,247 - 66,436,087 (+)	NCBI		HuRef
CHM1_1	7	69,159,054 - 70,352,884 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	70,821,258 - 72,017,159 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	68,403,004 - 69,597,617 (+)	NCBI

Auts2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	131,466,171 - 132,572,059 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	131,466,171 - 132,572,183 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	131,437,333 - 132,543,220 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	131,437,333 - 132,543,344 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	131,913,552 - 133,018,213 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	132,053,114 - 132,827,107 (-)	NCBI		MGSCv36	mm8
Celera	5	128,451,472 - 129,550,457 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	70.66	NCBI

Auts2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	10,296,377 - 10,322,455 (-)	Ensembl
ChiLan1.0	NW_004955456	10,294,525 - 11,417,761 (-)	NCBI	ChiLan1.0	ChiLan1.0

AUTS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	85,110,042 - 86,303,277 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	133,437,194 - 134,629,600 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	64,822,964 - 66,015,831 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	77,496,741 - 78,686,763 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	77,495,909 - 78,686,763 (+)	Ensembl			panPan2	panpan1.1

AUTS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	2,747,288 - 3,875,774 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	2,748,598 - 3,875,611 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	4,445,234 - 5,579,702 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	2,564,894 - 3,693,933 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	2,564,901 - 3,693,724 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	2,486,676 - 3,624,247 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	2,499,011 - 3,626,892 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	2,667,270 - 3,795,594 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Auts2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	127,849,011 - 128,840,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936543	5,146,961 - 6,187,634 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AUTS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	13,565,281 - 14,794,365 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	13,565,439 - 14,794,365 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	13,957,636 - 14,944,320 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AUTS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	4,565,958 - 5,759,088 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	4,567,622 - 4,595,056 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666070	10,993,492 - 12,006,970 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Auts2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	10,341,274 - 10,367,075 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	10,339,411 - 11,463,292 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Auts2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	22,427,043 - 22,521,658 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Auts2
18752 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	37
Count of miRNA genes:	36
Interacting mature miRNAs:	37
Transcripts:	ENSRNOT00000001182
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631560	Apr1	Acute phase response QTL 1	6.1		orosomucoid 1 amount (VT:0010541)	plasma orosomucoid 1 level (CMO:0001467)	12	24805022	52308831	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
8693635	Alc28	Alcohol consumption QTL 28	2.7	0.439	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	50386405	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7411643	Foco20	Food consumption QTL 20		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	25989355	52308831	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
1641928	Alcrsp5	Alcohol response QTL 5			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	12	18473041	52308831	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
1549829	Scl48	Serum cholesterol level QTL 48	5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	12	15264248	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
70169	Eae13	Experimental allergic encephalomyelitis QTL 13		0.032	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	12	29775522	42298555	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
61404	Bw120	Body weight QTL 120	5.1		body mass (VT:0001259)	body mass index (BMI) (CMO:0000105)	12	17464979	46784661	Rat
1331786	Kidm11	Kidney mass QTL 11	3.571		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	12	16187438	52308831	Rat
8693658	Alc33	Alcohol consumption QTL 33	2.1	0.68	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	12	28717718	49212240	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
2293699	Bss49	Bone structure and strength QTL 49	5.61	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	12	16135029	52308831	Rat
1331761	Bp218	Blood pressure QTL 218	2.973		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	51213550	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
61416	Pia4	Pristane induced arthritis QTL 4	8.4		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	12	18749469	36488809	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
61421	Cia12	Collagen induced arthritis QTL 12	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	18749469	34312613	Rat
1300157	Rf21	Renal function QTL 21	4.4		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	12	29636637	37764351	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303569	Gluco44	Glucose level QTL 44	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	18473041	52308831	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2300186	Bmd59	Bone mineral density QTL 59	7.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	12	16135029	52308831	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1331755	Bp219	Blood pressure QTL 219	3.041		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	16187438	33700556	Rat

Markers in Region

D12Mgh3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,234,777 - 24,234,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,285,473 - 27,285,590	NCBI	Rnor6.0
Rnor_5.0	12	29,257,552 - 29,257,669	UniSTS	Rnor5.0
RGSC_v3.4	12	25,271,824 - 25,271,941	UniSTS	RGSC3.4
RGSC_v3.4	12	25,271,823 - 25,271,941	RGD	RGSC3.4
Celera	12	25,971,194 - 25,971,311	UniSTS
RGSC_v3.1	12	25,134,969 - 25,135,323	RGD
RH 3.4 Map	12	405.5	UniSTS
RH 3.4 Map	12	405.5	RGD
RH 2.0 Map	12	285.3	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,490,641 - 30,490,785 (+)	Marker Load Pipeline
Rnor_6.0	12	27,911,196 - 27,911,339	NCBI	Rnor6.0
RGSC_v3.4	12	25,802,539 - 25,802,828	RGD	RGSC3.4
RGSC_v3.4	12	25,802,584 - 25,802,727	UniSTS	RGSC3.4
Celera	12	26,588,247 - 26,588,390	UniSTS
RGSC_v3.1	12	25,665,800 - 25,665,943	RGD
RH 3.4 Map	12	424.3	UniSTS
RH 3.4 Map	12	424.3	RGD
RH 2.0 Map	12	297.9	RGD
SHRSP x BN Map	12	27.31	RGD
FHH x ACI Map	12	12.29	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat23

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	29,775,377 - 29,775,522 (+)	Marker Load Pipeline
mRatBN7.2	12	24,139,057 - 24,139,202 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,190,096 - 27,190,240	NCBI	Rnor6.0
Rnor_5.0	12	29,163,046 - 29,163,190	UniSTS	Rnor5.0
RGSC_v3.4	12	25,367,106 - 25,367,251	RGD	RGSC3.4
RGSC_v3.4	12	25,367,107 - 25,367,251	UniSTS	RGSC3.4
Celera	12	25,875,595 - 25,875,739	UniSTS
RGSC_v3.1	12	25,230,197 - 25,230,561	RGD
SHRSP x BN Map	12	27.31	UniSTS
SHRSP x BN Map	12	27.31	RGD
FHH x ACI Map	12	11.22	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat11

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,956,669 - 24,956,834 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,014,147 - 28,014,311	NCBI	Rnor6.0
Rnor_5.0	12	29,979,515 - 29,979,679	UniSTS	Rnor5.0
RGSC_v3.4	12	25,905,756 - 25,905,921	RGD	RGSC3.4
RGSC_v3.4	12	25,905,757 - 25,905,921	UniSTS	RGSC3.4
Celera	12	26,689,778 - 26,689,938	UniSTS
RGSC_v3.1	12	25,768,972 - 25,769,137	RGD
SHRSP x BN Map	12	27.24	UniSTS
SHRSP x BN Map	12	27.24	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat13

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,825,686 - 24,825,856 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,882,828 - 27,882,997	NCBI	Rnor6.0
Rnor_5.0	12	29,849,769 - 29,849,938	UniSTS	Rnor5.0
RGSC_v3.4	12	25,773,602 - 25,774,160	RGD	RGSC3.4
RGSC_v3.4	12	25,773,966 - 25,774,135	UniSTS	RGSC3.4
Celera	12	26,559,619 - 26,559,788	UniSTS
RGSC_v3.1	12	25,637,182 - 25,637,351	RGD
RH 3.4 Map	12	433.8	RGD
RH 3.4 Map	12	433.8	UniSTS
SHRSP x BN Map	12	27.31	UniSTS
SHRSP x BN Map	12	27.31	RGD
FHH x ACI Map	12	12.29	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat27

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,448,384 - 30,448,591 (+)	Marker Load Pipeline
mRatBN7.2	12	24,812,101 - 24,812,308 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,869,409 - 27,869,615	NCBI	Rnor6.0
Rnor_5.0	12	29,836,557 - 29,836,763	UniSTS	Rnor5.0
RGSC_v3.4	12	25,760,364 - 25,760,571	RGD	RGSC3.4
RGSC_v3.4	12	25,760,365 - 25,760,571	UniSTS	RGSC3.4
Celera	12	26,546,235 - 26,546,444	UniSTS
RGSC_v3.1	12	25,623,581 - 25,623,787	RGD
RH 3.4 Map	12	426.4	UniSTS
RH 3.4 Map	12	426.4	RGD
SHRSP x BN Map	12	27.24	UniSTS
SHRSP x BN Map	12	27.24	RGD
FHH x ACI Map	12	12.29	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat45

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,793,734 - 30,793,980 (+)	Marker Load Pipeline
mRatBN7.2	12	25,157,460 - 25,157,706 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,217,098 - 28,217,343	NCBI	Rnor6.0
Rnor_5.0	12	30,177,794 - 30,178,039	UniSTS	Rnor5.0
RGSC_v3.4	12	26,132,118 - 26,132,364	RGD	RGSC3.4
RGSC_v3.4	12	26,132,119 - 26,132,364	UniSTS	RGSC3.4
Celera	12	26,887,907 - 26,888,152	UniSTS
RGSC_v3.1	12	25,995,334 - 25,995,580	RGD
SHRSP x BN Map	12	27.31	UniSTS
SHRSP x BN Map	12	27.31	RGD
FHH x ACI Map	12	13.34	RGD
Cytogenetic Map	12	q12	UniSTS

D12Rat82

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,591,667 - 30,591,804 (+)	Marker Load Pipeline
Rnor_5.0	12	29,978,539 - 29,978,675	UniSTS	Rnor5.0
RGSC_v3.4	12	25,904,400 - 25,904,537	RGD	RGSC3.4
RGSC_v3.4	12	25,904,401 - 25,904,537	UniSTS	RGSC3.4
RGSC_v3.1	12	25,767,422 - 25,767,820	RGD
FHH x ACI Map	12	12.29	UniSTS
FHH x ACI Map	12	12.29	RGD

D12Rat74

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,561,364 - 30,561,505 (+)	Marker Load Pipeline
mRatBN7.2	12	24,925,088 - 24,925,229 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,982,030 - 27,982,170	NCBI	Rnor6.0
Rnor_5.0	12	29,947,974 - 29,948,114	UniSTS	Rnor5.0
RGSC_v3.4	12	25,873,970 - 25,874,110	UniSTS	RGSC3.4
RGSC_v3.4	12	25,873,969 - 25,874,110	RGD	RGSC3.4
Celera	12	26,658,941 - 26,659,081	UniSTS
RGSC_v3.1	12	25,737,005 - 25,737,364	RGD
SHRSP x BN Map	12	27.31	UniSTS
SHRSP x BN Map	12	27.31	RGD
Cytogenetic Map	12	q12	UniSTS

D12Got57

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,605,757 - 24,605,919 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,658,780 - 27,658,941	NCBI	Rnor6.0
Rnor_5.0	12	29,628,532 - 29,628,693	UniSTS	Rnor5.0
RGSC_v3.4	12	25,549,856 - 25,550,018	RGD	RGSC3.4
RGSC_v3.4	12	25,549,857 - 25,550,018	UniSTS	RGSC3.4
Celera	12	26,339,952 - 26,340,103	UniSTS
RGSC_v3.1	12	25,413,073 - 25,413,234	RGD
RH 3.4 Map	12	407.7	UniSTS
RH 3.4 Map	12	407.7	RGD
RH 2.0 Map	12	317.9	RGD
Cytogenetic Map	12	q12	UniSTS

D12Got211

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,792,400 - 24,792,525 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,850,096 - 27,850,220	NCBI	Rnor6.0
Rnor_5.0	12	29,817,244 - 29,817,368	UniSTS	Rnor5.0
RGSC_v3.4	12	25,740,663 - 25,740,787	UniSTS	RGSC3.4
Celera	12	26,526,601 - 26,526,725	UniSTS
Cytogenetic Map	12		RGD

D12Uwm1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Celera	12	26,207,355 - 26,207,550	UniSTS
Cytogenetic Map	12	q12	UniSTS

D12Got212

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,000,469 - 25,000,690 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,059,696 - 28,059,916	NCBI	Rnor6.0
Rnor_5.0	12	30,024,738 - 30,024,958	UniSTS	Rnor5.0
RGSC_v3.4	12	25,950,341 - 25,950,561	UniSTS	RGSC3.4
Celera	12	26,733,440 - 26,733,660	UniSTS
Cytogenetic Map	12		RGD

D5Mit324

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RGSC_v3.4	12	25,399,377 - 25,399,502	UniSTS	RGSC3.4
Cytogenetic Map	12	q12	UniSTS

RH143368

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,095,095 - 25,095,254 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,155,432 - 28,155,590	NCBI	Rnor6.0
Rnor_5.0	12	30,116,628 - 30,116,786	UniSTS	Rnor5.0
RGSC_v3.4	12	26,069,730 - 26,069,888	UniSTS	RGSC3.4
Celera	12	26,826,580 - 26,826,738	UniSTS
RH 3.4 Map	12	422.9	UniSTS
Cytogenetic Map	12	q12	UniSTS

BF386703

Rat Assembly	Chr	Position (strand)	Source
Celera	12	26,190,187 - 26,190,346	UniSTS
RH 3.4 Map	12	403.91	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE115872

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,189,310 - 25,189,461 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,249,203 - 28,249,353	NCBI	Rnor6.0
Rnor_5.0	12	30,209,899 - 30,210,049	UniSTS	Rnor5.0
RGSC_v3.4	12	26,163,968 - 26,164,118	UniSTS	RGSC3.4
Celera	12	26,919,738 - 26,919,888	UniSTS
RH 3.4 Map	12	269.61	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH140659

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,633,890 - 30,634,075 (+)	Marker Load Pipeline
mRatBN7.2	12	24,997,621 - 24,997,806 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,056,844 - 28,057,028	NCBI	Rnor6.0
Rnor_5.0	12	30,022,212 - 30,022,396	UniSTS	Rnor5.0
RGSC_v3.4	12	25,947,307 - 25,947,491	UniSTS	RGSC3.4
Celera	12	26,730,593 - 26,730,777	UniSTS
RH 3.4 Map	12	424.4	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH141576

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,775,796 - 24,776,012 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,833,516 - 27,833,731	NCBI	Rnor6.0
Rnor_5.0	12	29,801,060 - 29,801,275	UniSTS	Rnor5.0
RGSC_v3.4	12	25,724,057 - 25,724,272	UniSTS	RGSC3.4
Celera	12	26,509,807 - 26,510,022	UniSTS
RH 3.4 Map	12	402.41	UniSTS
Cytogenetic Map	12	q12	UniSTS

R75209

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,191,760 - 25,191,929 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,251,653 - 28,251,821	NCBI	Rnor6.0
Rnor_5.0	12	30,212,349 - 30,212,517	UniSTS	Rnor5.0
RGSC_v3.4	12	26,166,418 - 26,166,586	UniSTS	RGSC3.4
Celera	12	26,922,188 - 26,922,356	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH142495

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,875,269 - 24,875,371 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,932,115 - 27,932,216	NCBI	Rnor6.0
Rnor_5.0	12	29,898,018 - 29,898,119	UniSTS	Rnor5.0
RGSC_v3.4	12	25,823,450 - 25,823,551	UniSTS	RGSC3.4
Celera	12	26,609,145 - 26,609,246	UniSTS
RH 3.4 Map	12	425.2	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH142855

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,949,867 - 24,949,995 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,007,381 - 28,007,508	NCBI	Rnor6.0
Rnor_5.0	12	29,973,325 - 29,973,452	UniSTS	Rnor5.0
RGSC_v3.4	12	25,898,795 - 25,898,922	UniSTS	RGSC3.4
Celera	12	26,683,414 - 26,683,541	UniSTS
RH 3.4 Map	12	424.4	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH143225

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,364,165 - 24,364,299 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,414,013 - 27,414,146	NCBI	Rnor6.0
Rnor_5.0	12	29,386,758 - 29,386,891	UniSTS	Rnor5.0
RGSC_v3.4	12	25,142,798 - 25,142,931	UniSTS	RGSC3.4
Celera	12	26,100,088 - 26,100,221	UniSTS
RH 3.4 Map	12	403.91	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH144305

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,290,586 - 24,290,688 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,341,278 - 27,341,379	NCBI	Rnor6.0
Rnor_5.0	12	29,313,357 - 29,313,458	UniSTS	Rnor5.0
RGSC_v3.4	12	25,216,174 - 25,216,275	UniSTS	RGSC3.4
Celera	12	26,026,999 - 26,027,100	UniSTS
RH 3.4 Map	12	403.21	UniSTS
Cytogenetic Map	12	q12	UniSTS

BF386235

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	12	30,273,794 - 30,274,013 (+)	Marker Load Pipeline
mRatBN7.2	12	24,637,499 - 24,637,718 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,691,531 - 27,691,749	NCBI	Rnor6.0
Rnor_5.0	12	29,660,839 - 29,661,057	UniSTS	Rnor5.0
RGSC_v3.4	12	25,582,998 - 25,583,216	UniSTS	RGSC3.4
Celera	12	26,371,755 - 26,371,973	UniSTS
RH 3.4 Map	12	405.9	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE102361

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,651,700 - 24,651,850 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,705,709 - 27,705,858	NCBI	Rnor6.0
Rnor_5.0	12	29,675,017 - 29,675,166	UniSTS	Rnor5.0
RGSC_v3.4	12	25,597,196 - 25,597,345	UniSTS	RGSC3.4
Celera	12	26,385,951 - 26,386,100	UniSTS
RH 3.4 Map	12	404.01	UniSTS
Cytogenetic Map	12	q12	UniSTS

BF387056

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,828,035 - 24,828,205 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,885,177 - 27,885,346	NCBI	Rnor6.0
Rnor_5.0	12	29,852,118 - 29,852,287	UniSTS	Rnor5.0
RGSC_v3.4	12	25,776,315 - 25,776,484	UniSTS	RGSC3.4
Celera	12	26,561,936 - 26,562,105	UniSTS
RH 3.4 Map	12	422.8	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE110558

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,183,753 - 25,183,933 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,243,648 - 28,243,827	NCBI	Rnor6.0
Rnor_5.0	12	30,204,344 - 30,204,523	UniSTS	Rnor5.0
RGSC_v3.4	12	26,158,413 - 26,158,592	UniSTS	RGSC3.4
Celera	12	26,914,197 - 26,914,376	UniSTS
RH 3.4 Map	12	434.4	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE120626

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,132,054 - 25,132,212 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,192,040 - 28,192,196	NCBI	Rnor6.0
Rnor_5.0	12	30,153,099 - 30,153,255	UniSTS	Rnor5.0
RGSC_v3.4	12	26,107,125 - 26,107,281	UniSTS	RGSC3.4
Celera	12	26,863,094 - 26,863,250	UniSTS
RH 3.4 Map	12	434.9	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE108318

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,953,472 - 24,953,663 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,011,025 - 28,011,215	NCBI	Rnor6.0
Rnor_5.0	12	29,976,616 - 29,976,806	UniSTS	Rnor5.0
RGSC_v3.4	12	25,902,478 - 25,902,668	UniSTS	RGSC3.4
Celera	12	26,686,825 - 26,687,015	UniSTS
RH 3.4 Map	12	423.9	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE108855

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,181,300 - 24,181,463 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,232,328 - 27,232,490	NCBI	Rnor6.0
Rnor_5.0	12	29,204,803 - 29,204,965	UniSTS	Rnor5.0
RGSC_v3.4	12	25,325,108 - 25,325,270	UniSTS	RGSC3.4
Celera	12	25,917,724 - 25,917,886	UniSTS
RH 3.4 Map	12	423.5	UniSTS
Cytogenetic Map	12	q12	UniSTS

BF412251

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,785,161 - 24,785,277 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,842,893 - 27,843,008	NCBI	Rnor6.0
Rnor_5.0	12	29,810,209 - 29,810,324	UniSTS	Rnor5.0
RGSC_v3.4	12	25,733,368 - 25,733,483	UniSTS	RGSC3.4
Celera	12	26,519,166 - 26,519,281	UniSTS
RH 3.4 Map	12	404.0	UniSTS
Cytogenetic Map	12	q12	UniSTS

AU047595

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,122,409 - 25,122,520 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,182,398 - 28,182,508	NCBI	Rnor6.0
Rnor_5.0	12	30,143,457 - 30,143,567	UniSTS	Rnor5.0
RGSC_v3.4	12	26,097,483 - 26,097,593	UniSTS	RGSC3.4
Celera	12	26,853,452 - 26,853,562	UniSTS

RH140050

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,128,479 - 24,128,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,179,526 - 27,179,710	NCBI	Rnor6.0
Rnor_5.0	12	29,153,308 - 29,153,492	UniSTS	Rnor5.0
RGSC_v3.4	12	25,377,728 - 25,377,912	UniSTS	RGSC3.4
Celera	12	25,865,220 - 25,865,404	UniSTS
RH 3.4 Map	12	403.01	UniSTS
Cytogenetic Map	12	q12	UniSTS

RH141345

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,096,808 - 25,097,014 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,157,153 - 28,157,358	NCBI	Rnor6.0
Rnor_5.0	12	30,118,288 - 30,118,493	UniSTS	Rnor5.0
RGSC_v3.4	12	26,071,846 - 26,072,051	UniSTS	RGSC3.4
Celera	12	26,828,197 - 26,828,402	UniSTS
RH 3.4 Map	12	408.2	UniSTS
Cytogenetic Map	12	q12	UniSTS

BM387176

Rat Assembly	Chr	Position (strand)	Source
Celera	12	25,893,592 - 25,893,773	UniSTS
RH 3.4 Map	5	807.6	UniSTS
Cytogenetic Map	12	q12	UniSTS

BE114476

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	25,056,170 - 25,056,327 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	28,116,443 - 28,116,599	NCBI	Rnor6.0
Rnor_5.0	12	30,077,918 - 30,078,074	UniSTS	Rnor5.0
RGSC_v3.4	12	26,007,268 - 26,007,424	UniSTS	RGSC3.4
Celera	12	26,789,070 - 26,789,226	UniSTS
RH 3.4 Map	12	424.3	UniSTS
Cytogenetic Map	12	q12	UniSTS

AU048982

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,605,778 - 24,605,915 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,658,801 - 27,658,937	NCBI	Rnor6.0
Rnor_5.0	12	29,628,553 - 29,628,689	UniSTS	Rnor5.0
RGSC_v3.4	12	25,549,878 - 25,550,014	UniSTS	RGSC3.4
Celera	12	26,339,973 - 26,340,099	UniSTS

ha2178

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	24,388,160 - 24,389,026 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	27,439,374 - 27,440,239	NCBI	Rnor6.0
Rnor_5.0	12	29,410,128 - 29,410,993	UniSTS	Rnor5.0
Celera	12	26,124,084 - 26,124,949	UniSTS
Cytogenetic Map	12	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	67	163	89	88	57	45	57	6	304	145	11	142	79	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598627	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271295	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063271296	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001182 ⟹ ENSRNOP00000001182

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	29,740,523 - 30,830,386 (+)	Ensembl
mRatBN7.2 Ensembl	12	25,099,800 - 25,192,866 (+)	Ensembl
Rnor_6.0 Ensembl	12	28,212,333 - 28,251,816 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000044800 ⟹ ENSRNOP00000051554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	24,576,354 - 24,594,037 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099151 ⟹ ENSRNOP00000091286

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	29,740,523 - 30,830,386 (+)	Ensembl
mRatBN7.2 Ensembl	12	24,453,473 - 25,192,866 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099826 ⟹ ENSRNOP00000094782

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	25,187,451 - 25,194,416 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118614 ⟹ ENSRNOP00000076894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	29,740,523 - 30,830,386 (+)	Ensembl
mRatBN7.2 Ensembl	12	24,104,192 - 25,192,866 (+)	Ensembl

RefSeq Acc Id:

NM_001107136 ⟹ NP_001100606

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,740,507 - 30,830,386 (+)	NCBI
mRatBN7.2	12	24,104,187 - 25,194,123 (+)	NCBI

RefSeq Acc Id:

XM_063271288 ⟹ XP_063127358

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,158 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271289 ⟹ XP_063127359

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,157 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271290 ⟹ XP_063127360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,158 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271291 ⟹ XP_063127361

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,158 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271292 ⟹ XP_063127362

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,156 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271293 ⟹ XP_063127363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,157 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271294 ⟹ XP_063127364

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	30,083,421 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271295 ⟹ XP_063127365

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	30,670,606 - 30,830,386 (+)	NCBI

RefSeq Acc Id:

XM_063271296 ⟹ XP_063127366

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	29,739,138 - 30,827,082 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100606	(Get FASTA)	NCBI Sequence Viewer
	XP_063127358	(Get FASTA)	NCBI Sequence Viewer
	XP_063127359	(Get FASTA)	NCBI Sequence Viewer
	XP_063127360	(Get FASTA)	NCBI Sequence Viewer
	XP_063127361	(Get FASTA)	NCBI Sequence Viewer
	XP_063127362	(Get FASTA)	NCBI Sequence Viewer
	XP_063127363	(Get FASTA)	NCBI Sequence Viewer
	XP_063127364	(Get FASTA)	NCBI Sequence Viewer
	XP_063127365	(Get FASTA)	NCBI Sequence Viewer
	XP_063127366	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001182
	ENSRNOP00000001182.7
	ENSRNOP00000076894
	ENSRNOP00000076894.2
	ENSRNOP00000091286
	ENSRNOP00000091286.2

Ensembl Acc Id:

ENSRNOP00000001182 ⟸ ENSRNOT00000001182

Ensembl Acc Id:

ENSRNOP00000091286 ⟸ ENSRNOT00000099151

Ensembl Acc Id:

ENSRNOP00000051554 ⟸ ENSRNOT00000044800

Ensembl Acc Id:

ENSRNOP00000076894 ⟸ ENSRNOT00000118614

Ensembl Acc Id:

ENSRNOP00000094782 ⟸ ENSRNOT00000099826

RefSeq Acc Id:	NP_001100606 ⟸ NM_001107136
- UniProtKB:	A0A8I5Y6H6 (UniProtKB/TrEMBL), A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127366 ⟸ XM_063271296
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063127362 ⟸ XM_063271292
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127363 ⟸ XM_063271293
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127359 ⟸ XM_063271289
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127358 ⟸ XM_063271288
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127361 ⟸ XM_063271291
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127360 ⟸ XM_063271290
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127364 ⟸ XM_063271294
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6AFU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063127365 ⟸ XM_063271295
- Peptide Label:	isoform X8
- UniProtKB:	F1M388 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M388-F1-model_v2	AlphaFold	F1M388	1-1022	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2323959	AgrOrtholog
Ensembl Genes	ENSRNOG00000000885	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000001182	ENTREZGENE
	ENSRNOT00000001182.7	UniProtKB/TrEMBL
	ENSRNOT00000099151	ENTREZGENE
	ENSRNOT00000099151.2	UniProtKB/TrEMBL
	ENSRNOT00000118614	ENTREZGENE
	ENSRNOT00000118614.2	UniProtKB/TrEMBL
InterPro	AUTS2	UniProtKB/TrEMBL
NCBI Gene	Auts2	ENTREZGENE
PANTHER	AUTISM SUSCEPTIBILITY GENE 2 PROTEIN	UniProtKB/TrEMBL
	PTHR14429	UniProtKB/TrEMBL
Pfam	Auts2	UniProtKB/TrEMBL
PhenoGen	Auts2	PhenoGen
PRINTS	FIBROSIN1LPF	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000000885	RatGTEx
UniProt	A0A8I5Y6H6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AFU9	ENTREZGENE, UniProtKB/TrEMBL
	F1M388	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-03-25	Auts2	activator of transcription and developmental regulator AUTS2	Auts2l1	autism susceptibility candidate 2-like 1	Data merged from RGD:1309972	737654	PROVISIONAL
2019-03-26	Auts2	activator of transcription and developmental regulator AUTS2	Auts2	AUTS2, activator of transcription and developmental regulator	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-02-01	Auts2	AUTS2, activator of transcription and developmental regulator	Auts2	autism susceptibility candidate 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-09-16	Auts2l1	autism susceptibility candidate 2-like 1	Auts2	autism susceptibility candidate 2	Name and Symbol changed	629549	APPROVED
2013-09-16	Auts2	autism susceptibility candidate 2	LOC100362819	autism susceptibility candidate 2-like	Name and Symbol changed	629549	APPROVED
2010-05-06	LOC100362819	autism susceptibility candidate 2-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-04-20	Autsl	autism susceptibility candidate like	Auts2l	autism susceptibility candidate 2-like	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-05-13	Auts2l	autism susceptibility candidate 2-like	Auts2_predicted	autism susceptibility candidate 2 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-12	Auts2_predicted	autism susceptibility candidate 2 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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