Eef1a1l1 (eukaryotic translation elongation factor 1 alpha 1 like 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Eef1a1l1 (eukaryotic translation elongation factor 1 alpha 1 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Eef1a1l1
Name: eukaryotic translation elongation factor 1 alpha 1 like 1
RGD ID: 2322143
Description: Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Orthologous to human EEF1A1P5 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 5).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor 1-alpha 1-like; eukaryotic translation elongation factor 1 alpha 1-like; LOC100360413; LOC100911991
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X153,525,380 - 153,527,134 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX153,448,733 - 153,527,212 (+)EnsemblGRCr8
mRatBN7.2X148,480,780 - 148,482,536 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX148,480,790 - 148,482,536 (-)EnsemblmRatBN7.2
mRatBN7.2 EnsemblX148,480,789 - 148,482,555 (+)EnsemblmRatBN7.2
Rnor_6.0X153,490,061 - 153,491,807 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX153,490,182 - 153,491,837 (-)Ensemblrn6Rnor6.0
Rnor_6.0 EnsemblX154,916,379 - 154,918,095 (-)Ensemblrn6Rnor6.0
Rnor_5.01149,215,978 - 149,217,724 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X156,022,812 - 156,024,560 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,916,094 - 132,917,840 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
25 22 83 215 152 150 88 116 88 12 484 254 11 174 101 121 62 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000085224   ⟹   ENSRNOP00000070777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX153,525,386 - 153,527,212 (+)Ensembl
mRatBN7.2 EnsemblX148,480,790 - 148,482,536 (-)Ensembl
Rnor_6.0 EnsemblX154,916,379 - 154,918,095 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000089027   ⟹   ENSRNOP00000070901
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX153,448,733 - 153,527,146 (+)Ensembl
mRatBN7.2 EnsemblX148,480,789 - 148,482,555 (+)Ensembl
Rnor_6.0 EnsemblX153,490,182 - 153,491,837 (-)Ensembl
RefSeq Acc Id: XM_039100128   ⟹   XP_038956056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X153,525,380 - 153,527,134 (+)NCBI
mRatBN7.2X148,480,780 - 148,482,536 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956056 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016947.4
  ENSRNOP00000070901
  ENSRNOP00000070901.1
  ENSRNOP00000107569.1
Ensembl Acc Id: ENSRNOP00000070901   ⟸   ENSRNOT00000089027
RefSeq Acc Id: XP_038956056   ⟸   XM_039100128
- UniProtKB: M0R757 (UniProtKB/TrEMBL),   A0A8L2Q996 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000070777   ⟸   ENSRNOT00000085224
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R757-F1-model_v2 AlphaFold M0R757 1-462 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13702034
Promoter ID:EPDNEW_R12555
Type:multiple initiation site
Name:LOC100911991_1
Description:elongation factor 1-alpha 1-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0X153,491,808 - 153,491,868EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2322143 AgrOrtholog
BioCyc Gene G2FUF-735 BioCyc
Ensembl Genes ENSRNOG00000011624 UniProtKB/TrEMBL
  ENSRNOG00000051885 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000056855 Ensembl
Ensembl Transcript ENSRNOT00000016947.5 UniProtKB/TrEMBL
  ENSRNOT00000085224.3 UniProtKB/TrEMBL
  ENSRNOT00000089027 ENTREZGENE
  ENSRNOT00000089027.3 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EF_GTP-bd_dom UniProtKB/TrEMBL
  G_TR_CS UniProtKB/TrEMBL
  GTP-eEF1A_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  TRAFAC_GTPase_members UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EF1A_euk/arc UniProtKB/TrEMBL
  Transl_elong_EFTu/EF1A_2 UniProtKB/TrEMBL
  Transl_elong_init/rib_B-barrel UniProtKB/TrEMBL
NCBI Gene 100360413 ENTREZGENE
PANTHER TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP-eEF1A_C UniProtKB/TrEMBL
  GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
PhenoGen Eef1a1l1 PhenoGen
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE EFACTOR_GTP UniProtKB/TrEMBL
  G_TR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011624 RatGTEx
  ENSRNOG00000051885 RatGTEx
  ENSRNOG00000056855 RatGTEx
Superfamily-SCOP Elong_init_C UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
  Translat_factor UniProtKB/TrEMBL
UniProt A0A8L2Q996 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LZI8_RAT UniProtKB/TrEMBL
  M0R757 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Eef1a1l1  eukaryotic translation elongation factor 1 alpha 1 like 1  LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like  LOC100911991  elongation factor 1-alpha 1-like  Data merged from RGD:6489209 737654 PROVISIONAL
2012-07-05 LOC100911991  elongation factor 1-alpha 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100360413  eukaryotic translation elongation factor 1 alpha 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL