EEF1A1P5 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 5) - Rat Genome Database

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Gene: EEF1A1P5 (eukaryotic translation elongation factor 1 alpha 1 pseudogene 5) Homo sapiens
Analyze
No known orthologs.
Symbol: EEF1A1P5
Name: eukaryotic translation elongation factor 1 alpha 1 pseudogene 5
RGD ID: 1349840
HGNC Page HGNC:3200
Description: Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in translational elongation. Located in extracellular exosome and nucleus.
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: EEF1AL3
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: EEF1A1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,019,423 - 133,021,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,019,486 - 133,020,874 (+)EnsemblGRCh38hg38GRCh38
GRCh379135,894,810 - 135,896,556 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369134,884,643 - 134,886,383 (+)NCBINCBI36Build 36hg18NCBI36
Celera9106,436,550 - 106,438,290 (+)NCBICelera
Cytogenetic Map9q34.13NCBI
HuRef9105,388,506 - 105,390,246 (+)NCBIHuRef
CHM1_19136,045,425 - 136,047,165 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8812466   PMID:19287380   PMID:19380743   PMID:20458337   PMID:21630459   PMID:21873635   PMID:22623428   PMID:22810585   PMID:23398456   PMID:23580065   PMID:24189400   PMID:24244333  
PMID:25796446   PMID:25963833   PMID:26217791   PMID:26460568   PMID:26641092   PMID:27371349   PMID:27591049   PMID:27976729   PMID:28416769   PMID:28515276   PMID:28685749   PMID:29635000  
PMID:29845934   PMID:30009671   PMID:30258100   PMID:30585729   PMID:30652415   PMID:30745168   PMID:30804502   PMID:30997501   PMID:31152661   PMID:31180492   PMID:31239290   PMID:31300519  
PMID:31324722   PMID:31527615   PMID:31527668   PMID:31586073   PMID:31665637   PMID:31839203   PMID:31980649   PMID:32120844   PMID:32807901   PMID:32905556   PMID:33644029   PMID:33948363  
PMID:34316707   PMID:34349018   PMID:34650049   PMID:34795231   PMID:35124280   PMID:35182466   PMID:35546148   PMID:35777956   PMID:36030824   PMID:36168627   PMID:36215168   PMID:36373674  
PMID:36414381   PMID:36424410   PMID:36574265   PMID:36584595  


Genomics

Variants

.
Variants in EEF1A1P5
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:210
Count of miRNA genes:202
Interacting mature miRNAs:205
Transcripts:ENST00000436459, ENST00000501580
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D9S915  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379135,896,443 - 135,896,639UniSTSGRCh37
Build 369134,886,264 - 134,886,460RGDNCBI36
Celera9106,438,171 - 106,438,367RGD
Cytogenetic Map9q34.13UniSTS
HuRef9105,390,127 - 105,390,323UniSTS
Marshfield Genetic Map9145.21RGD
Marshfield Genetic Map9145.21UniSTS
deCODE Assembly Map9146.34UniSTS
Whitehead-RH Map9494.1UniSTS
D9S1112  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh379135,896,502 - 135,896,674UniSTSGRCh37
Build 369134,886,323 - 134,886,495RGDNCBI36
Celera9106,438,230 - 106,438,402RGD
Cytogenetic Map9q34.13UniSTS
HuRef9105,390,186 - 105,390,359UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2153 1953 1312 294 1472 139 3502 1010 1671 312 1060 1410 159 1199 2064 2
Low 279 1029 411 327 476 324 853 1178 2041 105 388 197 11 5 724 2
Below cutoff 2 1 1 1 3 4 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_002350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL593851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000436459
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9133,019,486 - 133,020,874 (+)Ensembl
Protein Sequences
GenBank Protein Q5VTE0 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
Protein Domains
tr-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5VTE0-F1-model_v2 AlphaFold Q5VTE0 1-462 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:3200 AgrOrtholog
COSMIC EEF1A1P5 COSMIC
Ensembl Genes ENSG00000196205 Ensembl
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
  Translation factors UniProtKB/Swiss-Prot
GTEx ENSG00000196205 GTEx
HGNC ID HGNC:3200 ENTREZGENE
Human Proteome Map EEF1A1P5 Human Proteome Map
InterPro EFTu-like_2 UniProtKB/Swiss-Prot
  G_TR_CS UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  TF_GTP-bd_dom UniProtKB/Swiss-Prot
  Transl_B-barrel_sf UniProtKB/Swiss-Prot
  Transl_elong_EF1A/Init_IF2_C UniProtKB/Swiss-Prot
  Transl_elong_EF1A_euk/arc UniProtKB/Swiss-Prot
  Transl_elong_EFTu/EF1A_C UniProtKB/Swiss-Prot
NCBI Gene 158078 ENTREZGENE
PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED UniProtKB/Swiss-Prot
  TRANSLATION FACTOR UniProtKB/Swiss-Prot
Pfam GTP_EFTU UniProtKB/Swiss-Prot
  GTP_EFTU_D2 UniProtKB/Swiss-Prot
  GTP_EFTU_D3 UniProtKB/Swiss-Prot
PharmGKB PA27636 PharmGKB
PRINTS ELONGATNFCT UniProtKB/Swiss-Prot
PROSITE G_TR_1 UniProtKB/Swiss-Prot
  G_TR_2 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF50447 UniProtKB/Swiss-Prot
  SSF50465 UniProtKB/Swiss-Prot
  SSF52540 UniProtKB/Swiss-Prot
UniProt EF1A3_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 EEF1A1P5  eukaryotic translation elongation factor 1 alpha 1 pseudogene 5  EEF1AL3  eukaryotic translation elongation factor 1 alpha-like 3  Symbol and/or name change 5135510 APPROVED