Tex16 (testis expressed gene 16) - Rat Genome Database

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Gene: Tex16 (testis expressed gene 16) Rattus norvegicus
Analyze
Symbol: Tex16 (Ensembl: LOC100363993)
Name: testis expressed gene 16 (Ensembl:testis expressed gene 16-like)
RGD ID: 2321964
Description: INTERACTS WITH bisphenol A (ortholog); thalidomide (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100363993; LOC100911639; LOC103694498; testis expressed gene 16-like; uncharacterized LOC100911639; uncharacterized LOC103694498; uncharacterized protein LOC100363993
RGD Orthologs
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X81,132,620 - 81,509,047 (+)NCBIGRCr8
mRatBN7.2X76,948,823 - 77,316,809 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX76,952,421 - 77,246,799 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X83,232,065 - 83,456,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X83,484,497 - 83,571,043 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX78,249,803 - 78,488,750 (+)NCBICelera
Cytogenetic MapXq31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
bisphenol A  (ISO)
thalidomide  (ISO)

References

Genomics

Comparative Map Data
Tex16
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X81,132,620 - 81,509,047 (+)NCBIGRCr8
mRatBN7.2X76,948,823 - 77,316,809 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX76,952,421 - 77,246,799 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X83,232,065 - 83,456,482 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X83,484,497 - 83,571,043 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX78,249,803 - 78,488,750 (+)NCBICelera
Cytogenetic MapXq31NCBI
Tex16
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X110,804,655 - 111,159,053 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX110,920,704 - 111,037,023 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX110,801,086 - 111,153,476 (+)EnsemblGRCm39 Ensembl
GRCm39 EnsemblX111,148,746 - 111,153,549 (+)EnsemblGRCm39 Ensembl
GRCm38X111,896,766 - 112,127,326 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX112,011,007 - 112,127,326 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X109,207,129 - 109,240,935 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X108,210,464 - 108,244,270 (+)NCBIMGSCv36mm8
CeleraX98,762,490 - 98,796,010 (+)NCBICelera
Cytogenetic MapXE1NCBI
cM MapX48.76NCBI

Variants

.
Variants in Tex16
848 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001417287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001417289 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003754801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039100262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063279707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000107417   ⟹   ENSRNOP00000087893
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX76,952,421 - 77,179,460 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112211   ⟹   ENSRNOP00000084717
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX76,952,421 - 77,246,799 (+)Ensembl
RefSeq Acc Id: NM_001417287   ⟹   NP_001404216
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,052 - 81,509,047 (+)NCBI
mRatBN7.2X76,948,823 - 77,316,809 (+)NCBI
RefSeq Acc Id: NM_001417288   ⟹   NP_001404217
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,052 - 81,509,047 (+)NCBI
mRatBN7.2X76,948,823 - 77,316,809 (+)NCBI
RefSeq Acc Id: NM_001417289   ⟹   NP_001404218
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,052 - 81,371,703 (+)NCBI
mRatBN7.2X76,948,823 - 77,179,465 (+)NCBI
RefSeq Acc Id: XM_039100262   ⟹   XP_038956190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,222 - 81,371,703 (+)NCBI
mRatBN7.2X76,948,975 - 77,180,601 (+)NCBI
RefSeq Acc Id: XM_063279696   ⟹   XP_063135766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,053 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279697   ⟹   XP_063135767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,222 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279698   ⟹   XP_063135768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,132,626 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279699   ⟹   XP_063135769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,049 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279700   ⟹   XP_063135770
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,053 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279701   ⟹   XP_063135771
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,272,527 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279702   ⟹   XP_063135772
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,009 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279703   ⟹   XP_063135773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,225 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279704   ⟹   XP_063135774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,132,620 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279705   ⟹   XP_063135775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,009 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279706   ⟹   XP_063135776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,136,009 - 81,509,047 (+)NCBI
RefSeq Acc Id: XM_063279707   ⟹   XP_063135777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X81,132,626 - 81,509,047 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_038956190   ⟸   XM_039100262
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GGH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087893   ⟸   ENSRNOT00000107417
RefSeq Acc Id: ENSRNOP00000084717   ⟸   ENSRNOT00000112211
RefSeq Acc Id: NP_001404216   ⟸   NM_001417287
- Peptide Label: isoform 1
RefSeq Acc Id: NP_001404217   ⟸   NM_001417288
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001404218   ⟸   NM_001417289
- Peptide Label: isoform 3
RefSeq Acc Id: XP_063135774   ⟸   XM_063279704
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063135768   ⟸   XM_063279698
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135777   ⟸   XM_063279707
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135772   ⟸   XM_063279702
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063135775   ⟸   XM_063279705
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063135776   ⟸   XM_063279706
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063135769   ⟸   XM_063279699
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063135766   ⟸   XM_063279696
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135770   ⟸   XM_063279700
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063135767   ⟸   XM_063279697
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063135773   ⟸   XM_063279703
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063135771   ⟸   XM_063279701
- Peptide Label: isoform X4
Protein Domains
PH   SAM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-1838 BioCyc
Ensembl Genes ENSRNOG00000067650 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000107417 ENTREZGENE
  ENSRNOT00000107417.1 UniProtKB/TrEMBL
  ENSRNOT00000112211.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.30.29.30 UniProtKB/TrEMBL
InterPro CRIC_domain UniProtKB/TrEMBL
  PH-like_dom_sf UniProtKB/TrEMBL
  PH_domain UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene 100363993 ENTREZGENE
PANTHER CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS UniProtKB/TrEMBL
  CONNECTOR ENHANCER OF KINASE SUPPRESSOR OF RAS 3 UniProtKB/TrEMBL
  CONNECTOR ENHANCER OF KSR PROTEIN CNK UniProtKB/TrEMBL
Pfam CRIC_ras_sig UniProtKB/TrEMBL
  SAM_1 UniProtKB/TrEMBL
PhenoGen Tex16 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000067650 RatGTEx
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
  SSF47769 UniProtKB/TrEMBL
UniProt A0A8I5ZYP3_RAT UniProtKB/TrEMBL
  A0A8I6GGH5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-03-02 Tex16  testis expressed gene 16  LOC100363993  testis expressed gene 16-like  Name and Symbol changed 629549 APPROVED
2023-03-02 LOC100363993  testis expressed gene 16-like  LOC100911639  uncharacterized LOC100911639  Data merged from RGD:6491583 737654 PROVISIONAL
2021-03-09 LOC100363993  testis expressed gene 16-like  LOC103694498  uncharacterized LOC103694498  Data merged from RGD:9072813 737654 PROVISIONAL
2014-08-25 LOC103694498  uncharacterized LOC103694498      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911639  uncharacterized LOC100911639      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-06 LOC100363993  testis expressed gene 16-like      Symbol and Name status set to provisional 70820 PROVISIONAL