Abo (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Abo (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase) Rattus norvegicus
Analyze
Symbol: Abo
Name: ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
RGD ID: 2307241
Description: Enables alpha-1,3-galactosyltransferase activity and glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase activity. Involved in several processes, including negative regulation of apoptotic process; response to nematode; and response to retinoic acid. Predicted to be located in Golgi cisterna membrane and extracellular region. Predicted to be active in Golgi apparatus and vesicle. Human ortholog(s) of this gene implicated in several diseases, including Plasmodium falciparum malaria; graft-versus-host disease; leukemia (multiple); lung disease (multiple); and severe acute respiratory syndrome. Orthologous to human ABO (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase); PARTICIPATES IN lacto-series glycosphingolipid metabolic pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; acrylamide; ammonium chloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: a transferase; ABO blood group (alpha 1-3-N-acetylgalactosaminyltransferase, alpha 1-3-galactosyltransferase); ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase); Abo2; b blood group galactosyltransferase; b transferase; blood group A glycosyltransferase 2; cis-AB transferase 2; fucosylglycoprotein 3-alpha-galactosyltransferase; fucosylglycoprotein alpha-N-acetylgalactosaminyltransferase; glycoprotein-fucosylgalactoside alpha-galactosyltransferase; glycoprotein-fucosylgalactoside alpha-N-acetylgalactosaminyltransferase; histo-blood group A transferase; histo-blood group ABO system transferase 2; histo-blood group B transferase; LOC296504; NAGAT 2; putative blood group A transferase T2; transferase B, alpha 1-3-galactosyltransferase)
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,560,172 - 30,604,758 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2310,162,087 - 10,182,835 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,162,096 - 10,191,423 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx313,210,402 - 13,231,083 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,795,803 - 21,816,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,051,101 - 20,071,782 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.034,374,679 - 4,394,374 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,374,602 - 4,394,428 (-)Ensemblrn6Rnor6.0
Rnor_5.039,729,921 - 9,749,616 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,730,553 - 5,751,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera34,960,630 - 4,981,265 (-)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Distribution of ABO blood groups in childhood acute leukemia. Alavi S, etal., Pediatr Hematol Oncol. 2006 Dec;23(8):611-7.
2. ABO compatibility and acute graft-versus-host disease following allogeneic bone marrow transplantation. Bacigalupo A, etal., Transplantation. 1988 Jun;45(6):1091-4.
3. Hepatic cystogenesis is associated with abnormal expression and location of ion transporters and water channels in an animal model of autosomal recessive polycystic kidney disease. Banales JM, etal., Am J Pathol. 2008 Dec;173(6):1637-46. Epub 2008 Nov 6.
4. DNA methylation of the ABO promoter underlies loss of ABO allelic expression in a significant proportion of leukemic patients. Bianco-Miotto T, etal., PLoS One. 2009;4(3):e4788. doi: 10.1371/journal.pone.0004788. Epub 2009 Mar 10.
5. Lack of association between asthma and ABO blood group. Bijanzadeh M, etal., Lung. 2009 Nov-Dec;187(6):389-92. Epub 2009 Sep 22.
6. Influence of infectious diseases on hereditary polymorphism with respect to the blood groups of the ABO system. Bubnov YI, etal., Sov Genet. 1974 Nov 15;9(1):105-8.
7. ABO/secretor genetic complex is associated with the susceptibility of childhood asthma in Taiwan. Chen YL, etal., Clin Exp Allergy. 2005 Jul;35(7):926-32.
8. ABO blood group and susceptibility to severe acute respiratory syndrome. Cheng Y, etal., JAMA. 2005 Mar 23;293(12):1450-1.
9. [The distribution of ABO system blood groups in patients with unilocular echinococcosis]. Chobanov RE and Salekhov AA, Med Parazitol (Mosk). 1990 Mar-Apr;(2):18-20.
10. [Correlations of the antigenic specificity of human blood with the levels of antihemagglutinins to influenza viruses]. Fedorova GI, etal., Vopr Virusol. 1983 Jan-Feb;28(1):54-7.
11. Microarray analysis of retinoid-dependent gene activity during rat embryogenesis: increased collagen fibril production in a model of retinoid insufficiency. Flentke GR, etal., Dev Dyn. 2004 Apr;229(4):886-98.
12. Common variation in the ABO glycosyltransferase is associated with susceptibility to severe Plasmodium falciparum malaria. Fry AE, etal., Hum Mol Genet. 2008 Feb 15;17(4):567-76. doi: 10.1093/hmg/ddm331. Epub 2007 Nov 13.
13. Enzymes that synthesize the IB4 epitope are not sufficient to impart IB4 binding in dorsal root ganglia of rat. Fullmer JM, etal., J Comp Neurol. 2007 Mar 1;501(1):70-82.
14. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
15. Induction of red blood cell destruction by graft-derived antibodies after minor ABO-mismatched heart and lung transplantation. Hunt BJ, etal., Transplantation. 1988 Aug;46(2):246-9.
16. [Clinical efficacies of ABO-incompatible adult liver transplantation]. Ju WQ, etal., Zhonghua Yi Xue Za Zhi. 2011 Sep 27;91(36):2558-60.
17. The clinical implications of ABO blood groups in Pseudomonas aeruginosa sepsis in children. Kuo KC, etal., J Microbiol Immunol Infect. 2013 Apr;46(2):109-14. doi: 10.1016/j.jmii.2012.01.003. Epub 2012 Mar 29.
18. Association between ABO blood groups and risk of SARS-CoV-2 pneumonia. Li J, etal., Br J Haematol. 2020 Jul;190(1):24-27. doi: 10.1111/bjh.16797. Epub 2020 May 26.
19. Expression of histo-blood group A antigen increases resistance to apoptosis and facilitates escape from immune control of rat colon carcinoma cells. Marionneau S, etal., Glycobiology. 2002 Dec;12(12):851-6.
20. Blood group A glycosyltransferase occurring as alleles with high sequence difference is transiently induced during a Nippostrongylus brasiliensis parasite infection. Olson FJ, etal., J Biol Chem 2002 Apr 26;277(17):15044-52.
21. ABO and Rh blood groups in patients with cholelithiasis and carcinoma of the gall bladder. Pandey M, etal., BMJ. 1995 Jun 24;310(6995):1639.
22. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
23. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
24. Characterization of the rat alpha(1,3)galactosyltransferase: evidence for two independent genes encoding glycosyltransferases that synthesize Galalpha(1,3)Gal by two separate glycosylation pathways. Taylor SG, etal., Glycobiology 2003 May;13(5):327-37.
25. The ABO blood group genotype and factor VIII levels as independent risk factors for venous thromboembolism. Tirado I, etal., Thromb Haemost. 2005 Mar;93(3):468-74.
26. Cloning of a rat gene encoding the histo-blood group B enzyme: rats have more than one Abo gene. Turcot AL, etal., Glycobiology. 2003 Dec;13(12):919-28. Epub 2003 Jun 10.
27. [Genetic markers of the ABO blood system in pulmonary sarcoidosis patients of different ethnic origin]. Volkova KI and Godes IE, Klin Med (Mosk). 1996;74(8):44-6.
28. Pancreatic cancer risk and ABO blood group alleles: results from the pancreatic cancer cohort consortium. Wolpin BM, etal., Cancer Res. 2010 Feb 1;70(3):1015-23. Epub 2010 Jan 26.
29. [Correlation between DNA methylation of the ABO gene promoter CpG island and leukemia]. Xu H, etal., Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2008 Apr;16(2):240-6.
Additional References at PubMed
PMID:11278752   PMID:12180981   PMID:12198488   PMID:12237302  


Genomics

Comparative Map Data
Abo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,560,172 - 30,604,758 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2310,162,087 - 10,182,835 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,162,096 - 10,191,423 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx313,210,402 - 13,231,083 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,795,803 - 21,816,484 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,051,101 - 20,071,782 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.034,374,679 - 4,394,374 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,374,602 - 4,394,428 (-)Ensemblrn6Rnor6.0
Rnor_5.039,729,921 - 9,749,616 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.435,730,553 - 5,751,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera34,960,630 - 4,981,265 (-)NCBICelera
Cytogenetic Map3p13NCBI
ABO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,250,401 - 133,275,201 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,233,278 - 133,276,024 (-)Ensemblhg38GRCh38
GRCh379136,125,788 - 136,150,617 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,120,384 - 135,140,451 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349133,160,116 - 133,180,184NCBI
Celera9106,672,476 - 106,692,536 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,623,316 - 105,642,515 (-)NCBIHuRef
CHM1_19136,280,691 - 136,300,722 (-)NCBICHM1_1
T2T-CHM13v2.09145,463,984 - 145,489,076 (-)NCBIT2T-CHM13v2.0
Abo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,732,508 - 26,754,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,732,515 - 26,754,991 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38226,842,496 - 26,864,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,842,503 - 26,864,979 (-)Ensemblmm10GRCm38
MGSCv37226,698,023 - 26,720,499 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36226,664,512 - 26,686,988 (-)NCBIMGSCv36mm8
Celera226,552,235 - 26,574,718 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.06NCBI
ABO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,077,519 - 6,122,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,079,855 - 6,124,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,354,115 - 104,399,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19132,989,574 - 132,997,271 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9132,989,574 - 133,010,324 (-)EnsemblpanPan2panpan1.1
ABO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,746,749 - 49,758,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,748,693 - 49,758,479 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha949,003,262 - 49,012,806 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0950,622,683 - 50,632,476 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,622,856 - 50,632,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,385,323 - 49,394,880 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,699,814 - 49,709,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,804,746 - 49,814,294 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Abo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,324,312 - 10,330,690 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365701,315,192 - 1,322,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11272,912,239 - 272,935,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ABO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,863,100 - 4,892,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,863,165 - 4,885,849 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abo
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v159,802,285 - 9,832,264 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Abo
499 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:291
Count of miRNA genes:194
Interacting mature miRNAs:222
Transcripts:ENSRNOT00000044775
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat

Markers in Region
RH132268  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2310,162,172 - 10,162,384 (+)MAPPERmRatBN7.2
mRatBN7.2310,028,107 - 10,028,319 (-)MAPPERmRatBN7.2
Rnor_6.035,386,026 - 5,386,237NCBIRnor6.0
Rnor_6.034,374,754 - 4,374,965NCBIRnor6.0
Rnor_5.039,729,996 - 9,730,207UniSTSRnor5.0
Rnor_5.0310,737,095 - 10,737,306UniSTSRnor5.0
RGSC_v3.435,596,564 - 5,596,775UniSTSRGSC3.4
RGSC_v3.435,730,628 - 5,730,839UniSTSRGSC3.4
Celera34,960,705 - 4,960,916UniSTS
Celera34,829,378 - 4,829,589UniSTS
Cytogenetic Map3p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 90 89 58 44 58 6 307 144 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000044775   ⟹   ENSRNOP00000039997
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,162,099 - 10,182,799 (-)Ensembl
Rnor_6.0 Ensembl34,374,602 - 4,394,428 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072025   ⟹   ENSRNOP00000067875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,162,096 - 10,168,647 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095709   ⟹   ENSRNOP00000095872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,162,096 - 10,168,505 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115517   ⟹   ENSRNOP00000077138
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl310,162,096 - 10,191,423 (-)Ensembl
RefSeq Acc Id: NM_001160263   ⟹   NP_001153735
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,174 - 30,580,876 (-)NCBI
mRatBN7.2310,162,095 - 10,182,799 (-)NCBI
Rnor_6.034,374,679 - 4,394,374 (-)NCBI
Rnor_5.039,729,921 - 9,749,616 (-)NCBI
RGSC_v3.435,730,553 - 5,751,204 (-)RGD
Celera34,960,630 - 4,981,265 (-)RGD
Sequence:
RefSeq Acc Id: XM_039104075   ⟹   XP_038960003
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,580,909 (-)NCBI
mRatBN7.2310,162,087 - 10,182,835 (-)NCBI
RefSeq Acc Id: XM_063282943   ⟹   XP_063139013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,604,758 (-)NCBI
RefSeq Acc Id: XM_063282944   ⟹   XP_063139014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,579,185 (-)NCBI
RefSeq Acc Id: XM_063282945   ⟹   XP_063139015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,604,725 (-)NCBI
RefSeq Acc Id: XM_063282946   ⟹   XP_063139016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,604,693 (-)NCBI
RefSeq Acc Id: XM_063282947   ⟹   XP_063139017
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8330,560,172 - 30,579,185 (-)NCBI
RefSeq Acc Id: NP_001153735   ⟸   NM_001160263
- UniProtKB: Q8CFC4 (UniProtKB/Swiss-Prot),   A6JTH9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039997   ⟸   ENSRNOT00000044775
RefSeq Acc Id: XP_038960003   ⟸   XM_039104075
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000077138   ⟸   ENSRNOT00000115517
Ensembl Acc Id: ENSRNOP00000067875   ⟸   ENSRNOT00000072025
Ensembl Acc Id: ENSRNOP00000095872   ⟸   ENSRNOT00000095709
RefSeq Acc Id: XP_063139013   ⟸   XM_063282943
- Peptide Label: isoform X1
- UniProtKB: A0A8I5Y5Y8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063139015   ⟸   XM_063282945
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139016   ⟸   XM_063282946
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139017   ⟸   XM_063282947
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063139014   ⟸   XM_063282944
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CFC4-F1-model_v2 AlphaFold Q8CFC4 1-334 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2307241 AgrOrtholog
BioCyc Gene G2FUF-50333 BioCyc
Ensembl Genes ENSRNOG00000046958 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00000086621 ENTREZGENE
Ensembl Transcript ENSRNOT00000044775.5 UniProtKB/Swiss-Prot
  ENSRNOT00000099183 ENTREZGENE
  ENSRNOT00000115517 ENTREZGENE
Gene3D-CATH Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A UniProtKB/Swiss-Prot
InterPro Glyco_trans_6 UniProtKB/Swiss-Prot
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot
KEGG Report rno:100301568 UniProtKB/Swiss-Prot
NCBI Gene 100301568 ENTREZGENE
PANTHER HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE UniProtKB/Swiss-Prot
  PTHR10462 UniProtKB/Swiss-Prot
Pfam Glyco_transf_6 UniProtKB/Swiss-Prot
PhenoGen Abo PhenoGen
RatGTEx ENSRNOG00000046958 RatGTEx
  ENSRNOG00000086621 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot
UniProt A0A8I5Y5Y8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ADA3_RAT UniProtKB/TrEMBL
  A0A8I6AMH2_RAT UniProtKB/TrEMBL
  A0ABK0L806_RAT UniProtKB/TrEMBL
  A0ABK0LF35_RAT UniProtKB/TrEMBL
  A0ABK0LIA6_RAT UniProtKB/TrEMBL
  A0ABK0M0H7_RAT UniProtKB/TrEMBL
  A0ABK0M196_RAT UniProtKB/TrEMBL
  A6JTH9 ENTREZGENE, UniProtKB/TrEMBL
  BGAT2_RAT UniProtKB/Swiss-Prot
  M0RE11_RAT UniProtKB/TrEMBL
  Q8CFC4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-26 Abo  ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase  Abo  ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-05-22 Abo2  histo-blood group ABO system transferase 2      Symbol and Name status set to provisional 70820 PROVISIONAL