ABO (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase) - Rat Genome Database

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Gene: ABO (ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase) Chlorocebus sabaeus
Analyze
Symbol: ABO
Name: ABO, alpha 1-3-N-acetylgalactosaminyltransferase and alpha 1-3-galactosyltransferase
RGD ID: 18362384
Description: ENCODES a protein that exhibits alpha-1,3-galactosyltransferase activity (ortholog); antigen binding (ortholog); fucosylgalactoside 3-alpha-galactosyltransferase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); oligosaccharide biosynthetic process (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); acute lymphoblastic leukemia (ortholog); Adenoviridae Infections (ortholog); FOUND IN Golgi apparatus (inferred); membrane (inferred); vesicle (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase); histo-blood group ABO system transferase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,863,100 - 4,892,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,863,165 - 4,885,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
Golgi apparatus  (IEA)
membrane  (IEA)
vesicle  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ABO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1124,863,100 - 4,892,204 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl124,863,165 - 4,885,849 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ABO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389133,250,401 - 133,275,201 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9133,233,278 - 133,276,024 (-)EnsemblGRCh38hg38GRCh38
GRCh379136,125,788 - 136,150,617 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369135,120,384 - 135,140,451 (-)NCBINCBI36Build 36hg18NCBI36
Build 349133,160,116 - 133,180,184NCBI
Celera9106,672,476 - 106,692,536 (-)NCBICelera
Cytogenetic Map9q34.2NCBI
HuRef9105,623,316 - 105,642,515 (-)NCBIHuRef
CHM1_19136,280,691 - 136,300,722 (-)NCBICHM1_1
T2T-CHM13v2.09145,463,984 - 145,489,076 (-)NCBIT2T-CHM13v2.0
Abo
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,732,508 - 26,754,973 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,732,515 - 26,754,991 (-)EnsemblGRCm39 Ensembl
GRCm38226,842,496 - 26,864,995 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl226,842,503 - 26,864,979 (-)EnsemblGRCm38mm10GRCm38
MGSCv37226,698,023 - 26,720,499 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36226,664,512 - 26,686,988 (-)NCBIMGSCv36mm8
Celera226,552,235 - 26,574,718 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map219.06NCBI
Abo
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8330,560,172 - 30,604,758 (-)NCBIGRCr8
mRatBN7.2310,162,087 - 10,182,835 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl310,162,096 - 10,191,423 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx313,210,402 - 13,231,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0321,795,803 - 21,816,484 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0320,051,101 - 20,071,782 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.034,374,679 - 4,394,374 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,374,602 - 4,394,428 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.039,729,921 - 9,749,616 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.435,730,553 - 5,751,204 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera34,960,630 - 4,981,265 (-)NCBICelera
Cytogenetic Map3p13NCBI
ABO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2116,077,519 - 6,122,488 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan196,079,855 - 6,124,240 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09104,354,115 - 104,399,057 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19132,989,574 - 132,997,271 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9132,989,574 - 133,010,324 (-)Ensemblpanpan1.1panPan2
ABO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1949,746,749 - 49,758,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl949,748,693 - 49,758,479 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha949,003,262 - 49,012,806 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0950,622,683 - 50,632,476 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl950,622,856 - 50,632,740 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1949,385,323 - 49,394,880 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0949,699,814 - 49,709,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0949,804,746 - 49,814,294 (-)NCBIUU_Cfam_GSD_1.0
Abo
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934910,324,312 - 10,330,690 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365701,315,192 - 1,322,719 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11272,912,239 - 272,935,316 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 17 4
Low 19 12 51
Below cutoff 5 5

Sequence


Reference Sequences
RefSeq Acc Id: ENSCSAT00000013286   ⟹   ENSCSAP00000011291
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl124,863,165 - 4,885,849 (+)Ensembl
RefSeq Acc Id: XM_008005794   ⟹   XP_008003985
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1124,863,103 - 4,886,301 (+)NCBI
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005795   ⟹   XP_008003986
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1124,863,102 - 4,886,301 (+)NCBI
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005797   ⟹   XP_008003988
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1124,863,102 - 4,886,301 (+)NCBI
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,102 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005802   ⟹   XP_008003993
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1124,863,145 - 4,886,301 (+)NCBI
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,062 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008005803   ⟹   XP_008003994
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1124,863,101 - 4,886,301 (+)NCBI
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,078 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037994232   ⟹   XP_037850160
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607910,775,478 - 10,796,089 (-)NCBI
RefSeq Acc Id: XM_037994233   ⟹   XP_037850161
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607910,775,478 - 10,780,732 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008003994   ⟸   XM_008005803
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003986   ⟸   XM_008005795
- Peptide Label: isoform X3
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003988   ⟸   XM_008005797
- Peptide Label: isoform X4
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003985   ⟸   XM_008005794
- Peptide Label: isoform X2
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_008003993   ⟸   XM_008005802
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000011291   ⟸   ENSCSAT00000013286
RefSeq Acc Id: XP_037850160   ⟸   XM_037994232
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037850161   ⟸   XM_037994233
- Peptide Label: isoform X5
- UniProtKB: A0A0D9RRQ2 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000015193 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000013286.1 UniProtKB/TrEMBL
InterPro Glyco_trans_6 UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report csab:103239700 UniProtKB/TrEMBL
NCBI Gene ABO ENTREZGENE
PANTHER HISTO-BLOOD GROUP ABO SYSTEM TRANSFERASE UniProtKB/TrEMBL
  PTHR10462 UniProtKB/TrEMBL
Pfam Glyco_transf_6 UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0D9RRQ2 ENTREZGENE, UniProtKB/TrEMBL