Car5a (carbonic anhydrase 5A) - Rat Genome Database

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Gene: Car5a (carbonic anhydrase 5A) Rattus norvegicus
Analyze
Symbol: Car5a
Name: carbonic anhydrase 5A
RGD ID: 2243
Description: Enables carbonate dehydratase activity. Predicted to be involved in one-carbon metabolic process. Predicted to be active in mitochondrion. Orthologous to human CA5A (carbonic anhydrase 5A); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CA-VA; Ca5; Ca5a; carbonate dehydratase VA; carbonic anhydrase 5; carbonic anhydrase 5 mitochondrial; carbonic anhydrase 5, mitochondrial; carbonic anhydrase 5a, mitochondrial; carbonic anhydrase Va, mitochondrial; MGC108708
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,881,678 - 66,911,486 (-)NCBIGRCr8
mRatBN7.21949,973,092 - 50,002,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,973,107 - 50,002,906 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,765,427 - 56,795,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,448,040 - 57,477,851 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,664,027 - 59,693,795 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,731,829 - 54,761,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,731,859 - 54,761,670 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,451,126 - 65,480,815 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,158,607 - 52,188,664 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,163,493 - 52,193,545 (-)NCBI
Celera1949,218,046 - 49,247,995 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
mitochondrion  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Mitochondrial carbonic anhydrase (isozyme V) in mouse and rat: cDNA cloning, expression, subcellular localization, processing, and tissue distribution. Nagao Y, etal., Proc Natl Acad Sci U S A 1994 Oct 25;91(22):10330-4.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. GOA pipeline RGD automated data pipeline
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:7929150   PMID:10677517   PMID:12477932   PMID:14600151   PMID:14651853   PMID:15489334   PMID:18614015  


Genomics

Comparative Map Data
Car5a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,881,678 - 66,911,486 (-)NCBIGRCr8
mRatBN7.21949,973,092 - 50,002,948 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,973,107 - 50,002,906 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1956,765,427 - 56,795,202 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01957,448,040 - 57,477,851 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01959,664,027 - 59,693,795 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01954,731,829 - 54,761,697 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1954,731,859 - 54,761,670 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01965,451,126 - 65,480,815 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41952,158,607 - 52,188,664 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11952,163,493 - 52,193,545 (-)NCBI
Celera1949,218,046 - 49,247,995 (-)NCBICelera
Cytogenetic Map19q12NCBI
CA5A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381687,881,549 - 87,936,529 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1687,881,546 - 87,936,580 (-)EnsemblGRCh38hg38GRCh38
GRCh371687,915,155 - 87,970,135 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361686,479,126 - 86,527,613 (-)NCBINCBI36Build 36hg18NCBI36
Build 341686,479,125 - 86,527,613NCBI
Celera1672,219,173 - 72,267,375 (-)NCBICelera
Cytogenetic Map16q24.2NCBI
HuRef1673,662,132 - 73,710,650 (-)NCBIHuRef
CHM1_11689,333,043 - 89,381,480 (-)NCBICHM1_1
T2T-CHM13v2.01693,954,203 - 94,009,111 (-)NCBIT2T-CHM13v2.0
Car5a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398122,642,874 - 122,671,651 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8122,642,865 - 122,671,643 (-)EnsemblGRCm39 Ensembl
GRCm388121,916,135 - 121,944,912 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,916,126 - 121,944,904 (-)EnsemblGRCm38mm10GRCm38
MGSCv378124,440,035 - 124,468,812 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368121,987,915 - 122,017,051 (-)NCBIMGSCv36mm8
MGSCv368124,802,236 - 124,830,994 (-)NCBIMGSCv36mm8
Celera8126,138,230 - 126,172,629 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.81NCBI
Ca5a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555412,139,920 - 2,160,597 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555412,141,450 - 2,159,955 (-)NCBIChiLan1.0ChiLan1.0
CA5A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21897,653,307 - 97,706,766 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116103,574,183 - 103,588,635 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01668,564,400 - 68,618,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11687,887,288 - 87,903,159 (-)NCBIpanpan1.1PanPan1.1panPan2
CA5A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1565,269,855 - 65,297,593 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl565,269,635 - 65,296,777 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha565,280,118 - 65,307,768 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0565,489,652 - 65,517,389 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl565,489,538 - 65,516,573 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1565,515,185 - 65,542,854 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0565,346,901 - 65,374,559 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0565,753,935 - 65,781,642 (+)NCBIUU_Cfam_GSD_1.0
Ca5a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934925,719,672 - 25,742,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366411,480,325 - 1,495,490 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366411,478,285 - 1,495,490 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CA5A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl61,506,042 - 1,538,777 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.161,495,615 - 1,539,390 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CA5A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1573,284,536 - 73,333,629 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660472,374,418 - 2,429,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ca5a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,293,875 - 1,315,890 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,293,619 - 1,323,067 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Car5a
222 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:39
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000025848
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)193383821455283146Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)194434021455283277Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194997648153225766Rat

Markers in Region
D19Rat21  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,976,481 - 49,976,619 (+)MAPPERmRatBN7.2
Rnor_6.01954,735,217 - 54,735,354NCBIRnor6.0
Rnor_5.01965,454,505 - 65,454,642UniSTSRnor5.0
RGSC_v3.41952,161,990 - 52,162,128RGDRGSC3.4
RGSC_v3.41952,161,991 - 52,162,128UniSTSRGSC3.4
RGSC_v3.11952,166,872 - 52,167,009RGD
Celera1949,221,436 - 49,221,573UniSTS
RH 3.4 Map19682.9UniSTS
RH 3.4 Map19682.9RGD
RH 2.0 Map19661.4RGD
Cytogenetic Map19q12UniSTS
AU048492  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,995,987 - 49,996,107 (+)MAPPERmRatBN7.2
Rnor_6.01954,754,723 - 54,754,842NCBIRnor6.0
Rnor_5.01965,474,033 - 65,474,152UniSTSRnor5.0
RGSC_v3.41952,181,788 - 52,181,907UniSTSRGSC3.4
Celera1949,241,081 - 49,241,200UniSTS
Cytogenetic Map19q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 23 23 23
Low 3 8 30 14 19 14 8 8 11 11 16 11 8
Below cutoff 16 4 4 4 2 58 22 24

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025848   ⟹   ENSRNOP00000025848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1949,973,107 - 50,002,906 (-)Ensembl
Rnor_6.0 Ensembl1954,731,859 - 54,761,670 (-)Ensembl
RefSeq Acc Id: NM_019293   ⟹   NP_062166
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,881,678 - 66,911,486 (-)NCBI
mRatBN7.21949,973,092 - 50,002,906 (-)NCBI
Rnor_6.01954,731,829 - 54,761,637 (-)NCBI
Rnor_5.01965,451,126 - 65,480,815 (-)NCBI
RGSC_v3.41952,158,607 - 52,188,664 (-)RGD
Celera1949,218,046 - 49,247,995 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_062166 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA50832 (Get FASTA)   NCBI Sequence Viewer  
  AAH88147 (Get FASTA)   NCBI Sequence Viewer  
  EDL92734 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000025848
  ENSRNOP00000025848.2
  ENSRNOP00055027657
  ENSRNOP00060026713
  ENSRNOP00065007852
GenBank Protein P43165 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_062166   ⟸   NM_019293
- Peptide Label: precursor
- UniProtKB: P43165 (UniProtKB/Swiss-Prot),   A6IZQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025848   ⟸   ENSRNOT00000025848
Protein Domains
Alpha-carbonic anhydrase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P43165-F1-model_v2 AlphaFold P43165 1-304 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701202
Promoter ID:EPDNEW_R11724
Type:multiple initiation site
Name:Ca5a_1
Description:carbonic anhydrase 5A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01954,761,641 - 54,761,701EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2243 AgrOrtholog
BioCyc Gene G2FUF-5409 BioCyc
Ensembl Genes ENSRNOG00000019098 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00055019945 UniProtKB/Swiss-Prot
  ENSRNOG00060018928 UniProtKB/Swiss-Prot
  ENSRNOG00065006822 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000025848 ENTREZGENE
  ENSRNOT00000025848.5 UniProtKB/Swiss-Prot
  ENSRNOT00055034054 UniProtKB/Swiss-Prot
  ENSRNOT00060032711 UniProtKB/Swiss-Prot
  ENSRNOT00065010631 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.200.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7323596 IMAGE-MGC_LOAD
InterPro CA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Carbonic_anhydrase_a-class_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:54233 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108708 IMAGE-MGC_LOAD
NCBI Gene 54233 ENTREZGENE
PANTHER CARBONIC ANHYDRASE UniProtKB/TrEMBL
  CARBONIC ANHYDRASE 5A, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18952 UniProtKB/Swiss-Prot
Pfam Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Car5a PhenoGen
PROSITE ALPHA_CA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ALPHA_CA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019098 RatGTEx
  ENSRNOG00055019945 RatGTEx
  ENSRNOG00060018928 RatGTEx
  ENSRNOG00065006822 RatGTEx
SMART Carb_anhydrase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Carbonic anhydrase UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A6IZQ6 ENTREZGENE, UniProtKB/TrEMBL
  CAH5A_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-18 Car5a  carbonic anhydrase 5A  Ca5a  carbonic anhydrase 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-04-16 Ca5a  carbonic anhydrase 5A  Car5a  carbonic anhydrase 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2018-03-16 Car5a  carbonic anhydrase 5A  Ca5a  carbonic anhydrase 5A  Symbol changed 629549 APPROVED
2016-05-20 Ca5a  carbonic anhydrase 5A  Car5a  carbonic anhydrase 5A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-05-18 Car5a  carbonic anhydrase 5A  Car5a  carbonic anhydrase 5a, mitochondrial  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-20 Car5a  carbonic anhydrase 5a, mitochondrial  Ca5a  carbonic anhydrase Va, mitochondrial  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-15 Ca5a  carbonic anhydrase Va, mitochondrial  Ca5a  carbonic anhydrase 5a, mitochondrial  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ca5a  carbonic anhydrase 5a, mitochondrial    carbonic anhydrase 5  Name updated 1299863 APPROVED
2002-06-10 Ca5a  carbonic anhydrase 5      Name updated 70584 APPROVED
2001-12-10 Ca5a  carbonic anhydrase 5, mitochondrial      Symbol and Name updated to reflect Human and Mouse nomenclature 69665 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localized to mitochondria 69789
gene_process may be involved in gluconeogenesis and ureagenesis 69789