Bfsp1 (beaded filament structural protein 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Bfsp1 (beaded filament structural protein 1) Rattus norvegicus
Analyze
Symbol: Bfsp1
Name: beaded filament structural protein 1
RGD ID: 2205
Description: Predicted to be a structural constituent of eye lens. Predicted to be involved in intermediate filament organization and lens fiber cell development. Predicted to act upstream of or within cell maturation. Predicted to be located in plasma membrane. Predicted to be active in cytoplasm and intermediate filament. Human ortholog(s) of this gene implicated in cataract 33. Orthologous to human BFSP1 (beaded filament structural protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 115-kDa; beaded filament structural protein 1 filensin; beaded filament structural protein 1, filensin; CP94; CP95; CP97; CP97 115-kDa; filensin; Filensin a cytoskeletal componenet (beaded filament) specific to the eye lens; lens fiber cell beaded-filament structural protein CP 94
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83151,648,588 - 151,706,153 (-)NCBIGRCr8
mRatBN7.23131,195,087 - 131,252,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,195,087 - 131,229,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3135,118,796 - 135,153,286 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03143,702,870 - 143,737,362 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03141,406,079 - 141,440,571 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03137,935,345 - 137,992,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3137,935,345 - 137,969,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03144,374,721 - 144,424,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43132,268,138 - 132,302,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,173,710 - 132,207,951 (-)NCBI
Celera3130,092,931 - 130,121,949 (-)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cell cortex  (IEA)
cytoplasm  (IBA,ISO,ISS)
intermediate filament  (IBA,IEA,ISO,ISS)
plasma membrane  (IEA,ISO,ISS)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. cDNA sequence analysis of CP94: rat lens fiber cell beaded-filament structural protein shows homology to cytokeratins. Masaki S and Watanabe T, Biochem Biophys Res Commun 1992 Jul 15;186(1):190-8.
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. GOA pipeline RGD automated data pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12835653   PMID:15037121   PMID:18178558   PMID:18326727   PMID:18449355  


Genomics

Comparative Map Data
Bfsp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83151,648,588 - 151,706,153 (-)NCBIGRCr8
mRatBN7.23131,195,087 - 131,252,668 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,195,087 - 131,229,337 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3135,118,796 - 135,153,286 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03143,702,870 - 143,737,362 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03141,406,079 - 141,440,571 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03137,935,345 - 137,992,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3137,935,345 - 137,969,658 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03144,374,721 - 144,424,049 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43132,268,138 - 132,302,378 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,173,710 - 132,207,951 (-)NCBI
Celera3130,092,931 - 130,121,949 (-)NCBICelera
Cytogenetic Map3q41NCBI
BFSP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382017,493,905 - 17,569,220 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2017,493,905 - 17,569,220 (-)EnsemblGRCh38hg38GRCh38
GRCh372017,474,550 - 17,549,865 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362017,422,550 - 17,459,974 (-)NCBINCBI36Build 36hg18NCBI36
Build 342017,422,550 - 17,459,974NCBI
Celera2017,549,027 - 17,614,092 (-)NCBICelera
Cytogenetic Map20p12.1NCBI
HuRef2017,437,512 - 17,512,555 (-)NCBIHuRef
CHM1_12017,474,583 - 17,549,870 (-)NCBICHM1_1
T2T-CHM13v2.02017,544,579 - 17,619,878 (-)NCBIT2T-CHM13v2.0
Bfsp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392143,668,448 - 143,757,320 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2143,668,448 - 143,705,093 (-)EnsemblGRCm39 Ensembl
GRCm382143,826,528 - 143,915,219 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2143,826,528 - 143,863,173 (-)EnsemblGRCm38mm10GRCm38
MGSCv372143,652,264 - 143,688,909 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362143,517,969 - 143,554,614 (-)NCBIMGSCv36mm8
Celera2145,009,411 - 145,046,263 (-)NCBICelera
Cytogenetic Map2G1NCBI
cM Map270.89NCBI
Bfsp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541526,507,528 - 26,535,551 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541526,507,381 - 26,535,545 (-)NCBIChiLan1.0ChiLan1.0
BFSP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22118,382,481 - 18,425,974 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12018,379,319 - 18,422,812 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02017,452,664 - 17,527,917 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12017,430,466 - 17,505,954 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2017,430,635 - 17,467,819 (-)Ensemblpanpan1.1panPan2
BFSP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1245,432,098 - 5,500,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl245,439,512 - 5,499,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha245,364,812 - 5,432,325 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,840,195 - 5,907,896 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,839,364 - 5,907,718 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,484,491 - 5,521,881 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0245,547,459 - 5,614,907 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,823,137 - 5,890,458 (+)NCBIUU_Cfam_GSD_1.0
Bfsp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640154,106,016 - 154,168,580 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364852,566,521 - 2,600,030 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364852,566,698 - 2,599,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BFSP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1725,933,900 - 25,967,005 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11725,933,743 - 25,966,940 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21729,343,023 - 29,376,119 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BFSP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1246,558,767 - 46,596,962 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660781,225,801 - 1,264,218 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bfsp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474118,653,108 - 18,681,652 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474118,652,956 - 18,682,307 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bfsp1
268 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:38
Count of miRNA genes:34
Interacting mature miRNAs:38
Transcripts:ENSRNOT00000007727
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
1598877Bp285Blood pressure QTL 2851.50.03arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3120538241165538241Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1300173Rf11Renal function QTL 113.38renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)3121056165145956249Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
10755461Coatc16Coat color QTL 16coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)3122438700167438700Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat
1576306Schws3Schwannoma susceptibility QTL 30.001nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)3118839124163839124Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1300159Kidm4Kidney mass QTL 43.83kidney mass (VT:0002707)right kidney wet weight to body weight ratio (CMO:0001953)3121056165157309487Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
631673Iddm13Insulin dependent diabetes mellitus QTL 131.30.663blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)3130193298161695983Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat

Markers in Region
D3Rat8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23131,212,042 - 131,212,228 (+)MAPPERmRatBN7.2
Rnor_6.03137,952,304 - 137,952,489NCBIRnor6.0
Rnor_5.03144,391,680 - 144,391,865UniSTSRnor5.0
RGSC_v3.43132,285,034 - 132,285,219UniSTSRGSC3.4
RGSC_v3.43132,285,033 - 132,285,219RGDRGSC3.4
RGSC_v3.13132,190,607 - 132,190,792RGD
Celera3130,109,887 - 130,110,072UniSTS
RH 3.4 Map31184.6RGD
RH 3.4 Map31184.6UniSTS
RH 2.0 Map3802.7RGD
SHRSP x BN Map364.1499RGD
FHH x ACI Map380.25RGD
Cytogenetic Map3q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007727   ⟹   ENSRNOP00000007727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3131,195,087 - 131,229,337 (-)Ensembl
Rnor_6.0 Ensembl3137,935,345 - 137,969,658 (-)Ensembl
RefSeq Acc Id: NM_031555   ⟹   NP_113743
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83151,648,588 - 151,682,837 (-)NCBI
mRatBN7.23131,195,087 - 131,229,337 (-)NCBI
Rnor_6.03137,935,345 - 137,969,658 (-)NCBI
Rnor_5.03144,374,721 - 144,424,049 (-)NCBI
RGSC_v3.43132,268,138 - 132,302,378 (-)RGD
Celera3130,092,931 - 130,121,949 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006235117   ⟹   XP_006235179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83151,648,593 - 151,706,153 (-)NCBI
mRatBN7.23131,195,087 - 131,252,668 (-)NCBI
Rnor_6.03137,935,345 - 137,992,652 (-)NCBI
Rnor_5.03144,374,721 - 144,424,049 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_113743 (Get FASTA)   NCBI Sequence Viewer  
  XP_006235179 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAA19737 (Get FASTA)   NCBI Sequence Viewer  
  EDL95183 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007727.4
GenBank Protein Q02435 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_113743   ⟸   NM_031555
- UniProtKB: F1M8F1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006235179   ⟸   XM_006235117
- Peptide Label: isoform X1
- UniProtKB: A6K736 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007727   ⟸   ENSRNOT00000007727
Protein Domains
IF rod

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q02435-F1-model_v2 AlphaFold Q02435 1-617 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2205 AgrOrtholog
BioCyc Gene G2FUF-47623 BioCyc
Ensembl Genes ENSRNOG00000005707 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007727.6 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vasodilator-stimulated phosphoprotein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro BFSP1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IF_rod_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:25394 UniProtKB/Swiss-Prot
NCBI Gene 25394 ENTREZGENE
PANTHER FILENSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR14069 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bfsp1 PhenoGen
PROSITE IF_ROD_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005707 RatGTEx
SMART Filament UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6K736 ENTREZGENE, UniProtKB/TrEMBL
  BFSP1_RAT UniProtKB/Swiss-Prot
  F1M8F1 ENTREZGENE, UniProtKB/TrEMBL
  Q02435 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Bfsp1  beaded filament structural protein 1  Bfsp1  beaded filament structural protein 1, filensin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-01-29 Bfsp1  beaded filament structural protein 1, filensin  Bfsp1  beaded filament structural protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-11-05 Bfsp1  beaded filament structural protein 1  Bfsp1  beaded filament structural protein 1, filensin  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-20 Bfsp1  beaded filament structural protein 1, filensin  Bfsp1  beaded filament structural protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2001-07-23 Bfsp1  Filensin      Name withdrawn 67952 WITHDRAWN
2001-07-23 Bfsp1  beaded filament structural protein 1, filensin      Name updated to reflect Human and Mouse nomenclature 67952 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression expressed only in the lens 631858
gene_homology demonstrates significant homology with cytokeratins 631858
gene_protein 94kDa 631858