Dbr1 (debranching RNA lariats 1) - Rat Genome Database

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Gene: Dbr1 (debranching RNA lariats 1) Rattus norvegicus
Analyze
Symbol: Dbr1
Name: debranching RNA lariats 1
RGD ID: 1598038
Description: Predicted to enable RNA lariat debranching enzyme activity. Predicted to be involved in RNA fragment catabolic process and mRNA splicing, via spliceosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in brain disease. Orthologous to human DBR1 (debranching RNA lariats 1); INTERACTS WITH bisphenol A; cadmium dichloride; Cuprizon.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: debranching enzyme homolog 1; debranching enzyme homolog 1 (S. cerevisiae); lariat debranching enzyme; LOC315950; LOC681234; similar to debranching enzyme homolog 1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,018,364 - 109,030,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8109,018,325 - 109,031,406 (+)EnsemblGRCr8
mRatBN7.28100,139,039 - 100,150,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,139,034 - 100,151,030 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,805,842 - 105,817,525 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,005,138 - 104,016,821 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,847,672 - 101,859,355 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,826,690 - 107,838,186 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,826,424 - 107,838,339 (+)Ensemblrn6Rnor6.0
Rnor_5.08107,251,356 - 107,262,732 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,443,418 - 104,455,249 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,539,355 - 99,551,081 (+)NCBICelera
Cytogenetic Map8q31NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10982890   PMID:12477932   PMID:22658674   PMID:30361391  


Genomics

Comparative Map Data
Dbr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88109,018,364 - 109,030,092 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8109,018,325 - 109,031,406 (+)EnsemblGRCr8
mRatBN7.28100,139,039 - 100,150,768 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8100,139,034 - 100,151,030 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8105,805,842 - 105,817,525 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08104,005,138 - 104,016,821 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08101,847,672 - 101,859,355 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08107,826,690 - 107,838,186 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8107,826,424 - 107,838,339 (+)Ensemblrn6Rnor6.0
Rnor_5.08107,251,356 - 107,262,732 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48104,443,418 - 104,455,249 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera899,539,355 - 99,551,081 (+)NCBICelera
Cytogenetic Map8q31NCBI
DBR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383138,160,988 - 138,174,921 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3138,160,988 - 138,174,949 (-)Ensemblhg38GRCh38
GRCh373137,879,830 - 137,893,763 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363139,362,542 - 139,376,463 (-)NCBIBuild 36Build 36hg18NCBI36
Build 343139,362,550 - 139,376,471NCBI
Celera3136,304,598 - 136,318,559 (-)NCBICelera
Cytogenetic Map3q22.3NCBI
HuRef3135,254,888 - 135,268,849 (-)NCBIHuRef
CHM1_13137,843,634 - 137,857,589 (-)NCBICHM1_1
T2T-CHM13v2.03140,901,580 - 140,915,511 (-)NCBIT2T-CHM13v2.0
Dbr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39999,457,839 - 99,467,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl999,457,852 - 99,466,554 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38999,575,786 - 99,585,007 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl999,575,799 - 99,584,501 (+)Ensemblmm10GRCm38
MGSCv37999,476,218 - 99,484,762 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36999,385,151 - 99,393,695 (+)NCBIMGSCv36mm8
Celera999,110,559 - 99,119,100 (+)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map951.86NCBI
DBR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22136,065,814 - 136,082,053 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13136,068,127 - 136,086,788 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03135,188,636 - 135,202,934 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13142,639,712 - 142,653,016 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3142,639,712 - 142,653,016 (-)EnsemblpanPan2panpan1.1
DBR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12334,375,691 - 34,388,317 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2334,376,228 - 34,388,263 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2334,368,284 - 34,380,893 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02334,915,650 - 34,928,302 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2334,915,650 - 34,928,278 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12334,597,534 - 34,610,147 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02334,662,956 - 34,675,492 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02334,913,997 - 34,926,603 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dbr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560273,766,245 - 73,776,137 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936540505,619 - 515,964 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936540504,638 - 515,913 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DBR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1378,958,218 - 78,970,137 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11378,958,301 - 78,970,250 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21386,477,860 - 86,480,220 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DBR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11552,367,197 - 52,381,076 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1552,367,357 - 52,380,227 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604125,381,120 - 25,394,996 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dbr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473014,681,730 - 14,711,368 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473014,682,951 - 14,693,450 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Dbr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1890,921,555 - 90,933,688 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Dbr1
79 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:127
Count of miRNA genes:100
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000019769
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1300177Cm2Cardiac mass QTL 23.65heart mass (VT:0007028)heart weight (CMO:0000017)863141536109261840Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)866992095111992095Rat
8693654Alc32Alcohol consumption QTL 3220.755drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)897492344116428905Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
2316950Scl66Serum cholesterol level QTL 664.1blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)839106363114525825Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
BF397095  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28100,150,660 - 100,150,856 (+)MAPPERmRatBN7.2
Rnor_6.08107,838,079 - 107,838,274NCBIRnor6.0
Rnor_5.08107,262,625 - 107,262,820UniSTSRnor5.0
RGSC_v3.48104,455,142 - 104,455,337UniSTSRGSC3.4
Celera899,550,974 - 99,551,169UniSTS
RH 3.4 Map81040.59UniSTS
Cytogenetic Map8q31UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 91 59 6 355 191 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000019769   ⟹   ENSRNOP00000019769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8109,018,353 - 109,030,090 (+)Ensembl
mRatBN7.2 Ensembl8100,139,034 - 100,151,030 (+)Ensembl
Rnor_6.0 Ensembl8107,826,424 - 107,838,339 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000127819   ⟹   ENSRNOP00000109481
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8109,018,325 - 109,031,406 (+)Ensembl
RefSeq Acc Id: NM_001109437   ⟹   NP_001102907
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88109,018,364 - 109,030,092 (+)NCBI
mRatBN7.28100,139,039 - 100,150,768 (+)NCBI
Rnor_6.08107,826,690 - 107,838,186 (+)NCBI
Rnor_5.08107,251,356 - 107,262,732 (+)NCBI
RGSC_v3.48104,443,418 - 104,455,249 (+)RGD
Celera899,539,355 - 99,551,081 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102907 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66797 (Get FASTA)   NCBI Sequence Viewer  
  EDL77437 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000019769.3
  ENSRNOP00000109481
  ENSRNOP00000109481.1
RefSeq Acc Id: NP_001102907   ⟸   NM_001109437
- UniProtKB: B2RYJ2 (UniProtKB/TrEMBL),   A6I2E0 (UniProtKB/TrEMBL),   F7FLJ5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000019769   ⟸   ENSRNOT00000019769
Ensembl Acc Id: ENSRNOP00000109481   ⟸   ENSRNOT00000127819
Protein Domains
Lariat debranching enzyme C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYJ2-F1-model_v2 AlphaFold B2RYJ2 1-545 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696212
Promoter ID:EPDNEW_R6737
Type:multiple initiation site
Name:Dbr1_1
Description:debranching RNA lariats 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08107,826,682 - 107,826,742EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1598038 AgrOrtholog
BioCyc Gene G2FUF-29391 BioCyc
Ensembl Genes ENSRNOG00000014588 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000019769.6 UniProtKB/TrEMBL
  ENSRNOT00000127819 ENTREZGENE
  ENSRNOT00000127819.1 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7938214 IMAGE-MGC_LOAD
InterPro DBR1_C UniProtKB/TrEMBL
  Dbr1_N UniProtKB/TrEMBL
  M-pesterase UniProtKB/TrEMBL
  Metallo-depent_PP-like UniProtKB/TrEMBL
KEGG Report rno:681234 UniProtKB/TrEMBL
MGC_CLONE MGC:188596 IMAGE-MGC_LOAD
NCBI Gene 681234 ENTREZGENE
PANTHER LARIAT DEBRANCHING ENZYME UniProtKB/TrEMBL
  RNA LARIAT DEBRANCHING ENZYME UniProtKB/TrEMBL
Pfam DBR1 UniProtKB/TrEMBL
  Metallophos UniProtKB/TrEMBL
PhenoGen Dbr1 PhenoGen
RatGTEx ENSRNOG00000014588 RatGTEx
SMART DBR1 UniProtKB/TrEMBL
Superfamily-SCOP SSF56300 UniProtKB/TrEMBL
UniProt A0ABZ3NNM7_RAT UniProtKB/TrEMBL
  A6I2E0 ENTREZGENE, UniProtKB/TrEMBL
  B2RYJ2 ENTREZGENE
  F7FLJ5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B2RYJ2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-16 Dbr1  debranching RNA lariats 1  Dbr1  debranching enzyme homolog 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2009-06-15 Dbr1  debranching enzyme homolog 1 (S. cerevisiae)  Dbr1_predicted  debranching enzyme homolog 1 (S. cerevisiae) (predicted)  Data merged from RGD:1311917 1643240 APPROVED
2008-03-05 Dbr1  debranching enzyme homolog 1 (S. cerevisiae)  LOC681234  similar to debranching enzyme homolog 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC681234  similar to debranching enzyme homolog 1  LOC683696  similar to debranching enzyme homolog 1  Data merged from RGD:1584458 1643240 APPROVED
2006-11-20 LOC681234  similar to debranching enzyme homolog 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683696  similar to debranching enzyme homolog 1      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-12 Dbr1_predicted  debranching enzyme homolog 1 (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED