Cimip7 (ciliary microtubule inner protein 7) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cimip7 (ciliary microtubule inner protein 7) Rattus norvegicus
Analyze
Symbol: Cimip7 (Ensembl: C8h3orf84)
Name: ciliary microtubule inner protein 7 (Ensembl:similar to human chromosome 3 open reading frame 84)
RGD ID: 1596842
Description: Orthologous to human CIMIP7 (ciliary microtubule inner protein 7); INTERACTS WITH bisphenol A; Aflatoxin B2 alpha (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: C8h3orf84; hypothetical protein LOC680045; LOC680045; similar to human chromosome 3 open reading frame 84; uncharacterized protein C3orf84 homolog; uncharacterized protein LOC680045
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,002,336 - 118,019,337 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.28109,131,138 - 109,140,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,124,762 - 109,140,791 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8114,752,720 - 114,762,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,952,051 - 112,961,724 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,794,701 - 110,804,374 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,214,999 - 117,231,024 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,221,367 - 117,231,029 (+)Ensemblrn6Rnor6.0
Rnor_5.08116,565,953 - 116,575,596 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera8108,431,733 - 108,441,366 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cimip7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88118,002,336 - 118,019,337 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.28109,131,138 - 109,140,784 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8109,124,762 - 109,140,791 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8114,752,720 - 114,762,393 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,952,051 - 112,961,724 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08110,794,701 - 110,804,374 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08117,214,999 - 117,231,024 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8117,221,367 - 117,231,029 (+)Ensemblrn6Rnor6.0
Rnor_5.08116,565,953 - 116,575,596 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera8108,431,733 - 108,441,366 (+)ENTREZGENECelera
Cytogenetic Map8q32NCBI
CIMIP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38349,177,634 - 49,191,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl349,177,634 - 49,191,858 (-)Ensemblhg38GRCh38
GRCh37349,215,067 - 49,229,291 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36349,190,073 - 49,204,114 (-)NCBIBuild 36Build 36hg18NCBI36
Celera349,172,338 - 49,184,925 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef349,273,028 - 49,287,244 (-)NCBIHuRef
CHM1_1349,167,840 - 49,182,055 (-)NCBICHM1_1
T2T-CHM13v2.0349,205,607 - 49,219,926 (-)NCBIT2T-CHM13v2.0
BC048562
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399108,313,681 - 108,323,282 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9108,313,681 - 108,323,285 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389108,436,482 - 108,446,083 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9108,436,482 - 108,446,086 (+)Ensemblmm10GRCm38
MGSCv379108,338,813 - 108,348,414 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369108,294,585 - 108,304,189 (+)NCBIMGSCv36mm8
Celera9108,045,624 - 108,055,271 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.35NCBI
Cimip7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555321,163,353 - 1,198,237 (-)Ensembl
ChiLan1.0NW_0049555321,163,399 - 1,172,197 (-)NCBIChiLan1.0ChiLan1.0
CIMIP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2249,155,473 - 49,169,640 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1349,160,239 - 49,174,495 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0349,100,962 - 49,115,215 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1350,180,907 - 50,195,215 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl350,180,907 - 50,195,215 (-)EnsemblpanPan2panpan1.1
C20H3orf84
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12040,012,730 - 40,021,983 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2040,012,854 - 40,021,981 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2039,930,901 - 39,940,154 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02040,369,593 - 40,378,845 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2040,369,716 - 40,378,843 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12039,736,506 - 39,745,708 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02040,139,971 - 40,149,223 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02040,420,245 - 40,429,496 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cimip7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560264,112,332 - 64,124,399 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936529872,837 - 884,879 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936529872,150 - 884,123 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C13H3orf84
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1331,780,277 - 31,792,782 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11331,780,619 - 31,790,704 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,011,821 - 35,023,160 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CIMIP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12210,579,771 - 10,594,148 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2210,579,776 - 10,593,388 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041156,499,978 - 156,501,477 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimip7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247303,188,765 - 3,198,025 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247303,187,956 - 3,198,064 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Cimip7
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1899,765,556 - 99,775,537 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Cimip7
268 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:107
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000073445
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)861019838121662124Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)849849908118871671Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)880768445125768445Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)880768445125768445Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)870041301121080908Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)868690349119799881Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)898145073122898010Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)880768445125768445Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)880768445125768445Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat

Markers in Region
RH144491  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28109,140,502 - 109,140,661 (+)MAPPERmRatBN7.2
Rnor_6.08117,230,741 - 117,230,899NCBIRnor6.0
Rnor_5.08116,575,315 - 116,575,473UniSTSRnor5.0
Celera8108,441,085 - 108,441,243UniSTS
RH 3.4 Map81120.9UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 6 56 57 29 25 7 10 7 6 105 82 42 4 42 18 13 13

Sequence


Ensembl Acc Id: ENSRNOT00000073445   ⟹   ENSRNOP00000066411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,131,138 - 109,140,791 (+)Ensembl
Rnor_6.0 Ensembl8117,221,367 - 117,231,029 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000105773   ⟹   ENSRNOP00000092454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8109,124,762 - 109,140,791 (+)Ensembl
RefSeq Acc Id: NM_001109389   ⟹   NP_001102859
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,009,686 - 118,019,330 (+)NCBI
mRatBN7.28109,131,138 - 109,140,784 (+)NCBI
Rnor_6.08117,221,379 - 117,231,022 (+)NCBI
Rnor_5.08116,565,953 - 116,575,596 (+)NCBI
Celera8108,431,733 - 108,441,366 (+)ENTREZGENE
Sequence:
RefSeq Acc Id: XM_063266113   ⟹   XP_063122183
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,002,336 - 118,019,337 (+)NCBI
RefSeq Acc Id: XM_063266114   ⟹   XP_063122184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88118,002,336 - 118,019,337 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001102859 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122183 (Get FASTA)   NCBI Sequence Viewer  
  XP_063122184 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL77174 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001102859   ⟸   NM_001109389
- UniProtKB: A6I353 (UniProtKB/TrEMBL),   A0A8I6AI70 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066411   ⟸   ENSRNOT00000073445
Ensembl Acc Id: ENSRNOP00000092454   ⟸   ENSRNOT00000105773
RefSeq Acc Id: XP_063122184   ⟸   XM_063266114
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122183   ⟸   XM_063266113
- Peptide Label: isoform X1
- UniProtKB: M0RA70 (UniProtKB/TrEMBL)
Protein Domains
Domain of unknown function with conserved HDNR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RA70-F1-model_v2 AlphaFold M0RA70 1-204 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696300
Promoter ID:EPDNEW_R6824
Type:multiple initiation site
Name:LOC680045_1
Description:hypothetical protein LOC680045
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08117,221,393 - 117,221,453EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596842 AgrOrtholog
BioCyc Gene G2FUF-29142 BioCyc
Ensembl Genes ENSRNOG00000047468 Ensembl
InterPro HDNR UniProtKB/TrEMBL
KEGG Report rno:680045 UniProtKB/TrEMBL
NCBI Gene 680045 ENTREZGENE
PANTHER CDNA SEQUENCE BC048562 UniProtKB/TrEMBL
  CDNA SEQUENCE BC048562 UniProtKB/TrEMBL
Pfam HDNR UniProtKB/TrEMBL
PhenoGen Cimip7 PhenoGen
RatGTEx ENSRNOG00000047468 RatGTEx
UniProt A0A8I6AI70 ENTREZGENE
  A6I353 ENTREZGENE, UniProtKB/TrEMBL
  M0RA70 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-08 Cimip7  ciliary microtubule inner protein 7  C8h3orf84  similar to human chromosome 3 open reading frame 84  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-09-19 C8h3orf84  similar to human chromosome 3 open reading frame 84  LOC680045  hypothetical protein LOC680045  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC680045  hypothetical protein LOC680045      Symbol and Name status set to provisional 70820 PROVISIONAL