Zcwpw2 (zinc finger CW-type and PWWP domain containing 2) - Rat Genome Database

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Gene: Zcwpw2 (zinc finger CW-type and PWWP domain containing 2) Rattus norvegicus
Analyze
Symbol: Zcwpw2
Name: zinc finger CW-type and PWWP domain containing 2
RGD ID: 1596709
Description: Predicted to enable histone H3K4me3 reader activity. Predicted to be involved in chromatin organization. Predicted to be active in nucleus. Orthologous to human ZCWPW2 (zinc finger CW-type and PWWP domain containing 2); INTERACTS WITH bisphenol A; Tesaglitazar; (+)-catechin (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC681381; similar to Zinc finger CW-type PWWP domain protein 1 homolog; zinc finger CW-type PWWP domain protein 2; zinc finger, CW type with PWWP domain 2
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88126,506,855 - 126,651,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8126,541,597 - 126,658,945 (-)EnsemblGRCr8
mRatBN7.28117,628,838 - 117,773,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8117,681,238 - 117,773,739 (-)EnsemblmRatBN7.2
Rnor_6.08126,080,907 - 126,402,056 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8126,305,191 - 126,390,801 (-)Ensemblrn6Rnor6.0
Rnor_5.08125,549,734 - 125,653,434 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48122,844,355 - 122,940,184 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8116,648,651 - 116,952,451 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14643017  


Genomics

Comparative Map Data
Zcwpw2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88126,506,855 - 126,651,270 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8126,541,597 - 126,658,945 (-)EnsemblGRCr8
mRatBN7.28117,628,838 - 117,773,096 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8117,681,238 - 117,773,739 (-)EnsemblmRatBN7.2
Rnor_6.08126,080,907 - 126,402,056 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8126,305,191 - 126,390,801 (-)Ensemblrn6Rnor6.0
Rnor_5.08125,549,734 - 125,653,434 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48122,844,355 - 122,940,184 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8116,648,651 - 116,952,451 (-)NCBICelera
Cytogenetic Map8q32NCBI
ZCWPW2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38328,348,721 - 28,526,358 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl328,348,721 - 28,538,122 (+)Ensemblhg38GRCh38
GRCh37328,390,212 - 28,567,849 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36328,406,993 - 28,541,637 (+)NCBIBuild 36Build 36hg18NCBI36
Celera328,368,439 - 28,503,337 (+)NCBICelera
Cytogenetic Map3p24.1NCBI
HuRef328,373,339 - 28,507,969 (+)NCBIHuRef
CHM1_1328,381,932 - 28,516,617 (+)NCBICHM1_1
T2T-CHM13v2.0328,350,777 - 28,528,247 (+)NCBIT2T-CHM13v2.0
Zcwpw2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399117,752,903 - 117,869,927 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9117,705,068 - 117,869,327 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm389117,923,835 - 118,040,859 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9117,876,000 - 118,040,259 (-)Ensemblmm10GRCm38
MGSCv379117,557,945 - 117,696,099 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369117,833,430 - 117,923,278 (-)NCBIMGSCv36mm8
Celera9118,349,663 - 118,488,847 (-)NCBICelera
Cytogenetic Map9F3NCBI
cM Map969.83NCBI
ZCWPW2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2228,297,790 - 28,470,815 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1328,302,708 - 28,476,201 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0328,238,772 - 28,410,939 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1328,625,053 - 28,732,830 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl328,602,532 - 28,732,830 (+)EnsemblpanPan2panpan1.1
ZCWPW2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12315,777,076 - 15,875,654 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2315,732,462 - 15,902,789 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2315,772,364 - 15,870,936 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02316,072,944 - 16,171,825 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2316,028,299 - 16,198,750 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12315,898,216 - 15,996,584 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02316,013,969 - 16,110,354 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02316,075,409 - 16,174,246 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Zcwpw2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118186,196,154 - 186,326,878 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647319,379,905 - 19,465,721 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647319,379,910 - 19,465,637 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCWPW2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1314,841,319 - 14,926,248 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11314,785,464 - 14,927,404 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21316,534,298 - 16,671,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCWPW2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11572,933,372 - 73,036,587 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604146,122,906 - 46,229,623 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zcwpw2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247886,224,059 - 6,392,951 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247886,210,044 - 6,392,934 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Zcwpw2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v18109,213,685 - 109,304,085 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENSRNOT00000055976
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)882352698127352698Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)855428333127966348Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat
10450865Bw175Body weight QTL 1754.1total fat pad mass (VT:0015008)adipose tissue molecular composition measurement (CMO:0000484)884192326129192326Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 163 91 90 59 80 59 6 343 179 11 142 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001430695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430703 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001430705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_190985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008757881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063266481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000089732   ⟹   ENSRNOP00000072884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8126,559,202 - 126,651,043 (-)Ensembl
mRatBN7.2 Ensembl8117,681,238 - 117,773,136 (-)Ensembl
Rnor_6.0 Ensembl8126,305,191 - 126,390,801 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096228   ⟹   ENSRNOP00000089746
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8126,559,195 - 126,650,954 (-)Ensembl
mRatBN7.2 Ensembl8117,681,238 - 117,773,739 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000140628   ⟹   ENSRNOP00000102512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8126,559,294 - 126,658,945 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141317   ⟹   ENSRNOP00000108924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8126,541,597 - 126,639,294 (-)Ensembl
RefSeq Acc Id: XM_039082848   ⟹   XP_038938776
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
mRatBN7.28117,681,234 - 117,773,096 (-)NCBI
RefSeq Acc Id: XM_039082849   ⟹   XP_038938777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
mRatBN7.28117,681,234 - 117,773,096 (-)NCBI
RefSeq Acc Id: XM_039082850   ⟹   XP_038938778
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
mRatBN7.28117,681,234 - 117,773,096 (-)NCBI
RefSeq Acc Id: XM_039082851   ⟹   XP_038938779
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
mRatBN7.28117,681,234 - 117,773,096 (-)NCBI
RefSeq Acc Id: XM_039082852   ⟹   XP_038938780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
mRatBN7.28117,681,234 - 117,773,096 (-)NCBI
RefSeq Acc Id: XM_063266476   ⟹   XP_063122546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,048 (-)NCBI
RefSeq Acc Id: XM_063266477   ⟹   XP_063122547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,638,970 (-)NCBI
RefSeq Acc Id: XM_063266478   ⟹   XP_063122548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,048 (-)NCBI
RefSeq Acc Id: XM_063266479   ⟹   XP_063122549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,270 (-)NCBI
RefSeq Acc Id: XM_063266480   ⟹   XP_063122550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,048 (-)NCBI
RefSeq Acc Id: XM_063266481   ⟹   XP_063122551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,190 - 126,651,055 (-)NCBI
RefSeq Acc Id: XR_005488686
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,055 (-)NCBI
mRatBN7.28117,628,879 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488687
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,639,202 (-)NCBI
mRatBN7.28117,628,879 - 117,761,247 (-)NCBI
RefSeq Acc Id: XR_005488688
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,638,978 (-)NCBI
mRatBN7.28117,628,879 - 117,761,023 (-)NCBI
RefSeq Acc Id: XR_005488689
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,055 (-)NCBI
mRatBN7.28117,628,880 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488690
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,055 (-)NCBI
mRatBN7.28117,628,879 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488691
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,563,966 - 126,651,055 (-)NCBI
mRatBN7.28117,685,984 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488692
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,055 (-)NCBI
mRatBN7.28117,628,879 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488693
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,559,752 - 126,651,055 (-)NCBI
mRatBN7.28117,681,712 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488695
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,541,657 - 126,651,055 (-)NCBI
mRatBN7.28117,663,692 - 117,773,096 (-)NCBI
RefSeq Acc Id: XR_005488696
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,622,105 (-)NCBI
mRatBN7.28117,628,838 - 117,712,061 (-)NCBI
RefSeq Acc Id: XR_010054511
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,048 (-)NCBI
RefSeq Acc Id: XR_010054512
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88126,506,855 - 126,651,249 (-)NCBI
Ensembl Acc Id: ENSRNOP00000072884   ⟸   ENSRNOT00000089732
RefSeq Acc Id: XP_038938780   ⟸   XM_039082852
- Peptide Label: isoform X5
- UniProtKB: A6I3T3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938777   ⟸   XM_039082849
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938776   ⟸   XM_039082848
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938779   ⟸   XM_039082851
- Peptide Label: isoform X4
- UniProtKB: A6I3T3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938778   ⟸   XM_039082850
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000089746   ⟸   ENSRNOT00000096228
RefSeq Acc Id: XP_063122549   ⟸   XM_063266479
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063122551   ⟸   XM_063266481
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063122548   ⟸   XM_063266478
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K432 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063122546   ⟸   XM_063266476
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063122550   ⟸   XM_063266480
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063122547   ⟸   XM_063266477
- Peptide Label: isoform X1
- UniProtKB: A0A8I6GHL5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000108924   ⟸   ENSRNOT00000141317
Ensembl Acc Id: ENSRNOP00000102512   ⟸   ENSRNOT00000140628
Protein Domains
CW-type   PWWP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K432-F1-model_v2 AlphaFold A0A0G2K432 1-310 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596709 AgrOrtholog
BioCyc Gene G2FUF-28834 BioCyc
Ensembl Genes ENSRNOG00000053820 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000089732 ENTREZGENE
  ENSRNOT00000089732.3 UniProtKB/TrEMBL
  ENSRNOT00000096228 ENTREZGENE
  ENSRNOT00000096228.2 UniProtKB/TrEMBL
  ENSRNOT00000140628 ENTREZGENE
  ENSRNOT00000140628.1 UniProtKB/TrEMBL
  ENSRNOT00000141317 ENTREZGENE
  ENSRNOT00000141317.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  3.30.40.100 UniProtKB/TrEMBL
InterPro PWWP_dom UniProtKB/TrEMBL
  ZCWPW1/ZCWPW2 UniProtKB/TrEMBL
  Znf_CW UniProtKB/TrEMBL
NCBI Gene 681381 ENTREZGENE
PANTHER PTHR15999 UniProtKB/TrEMBL
  ZINC FINGER CW-TYPE PWWP DOMAIN PROTEIN 2 UniProtKB/TrEMBL
Pfam PWWP UniProtKB/TrEMBL
  zf-CW UniProtKB/TrEMBL
PhenoGen Zcwpw2 PhenoGen
PROSITE PWWP UniProtKB/TrEMBL
  ZF_CW UniProtKB/TrEMBL
RatGTEx ENSRNOG00000053820 RatGTEx
Superfamily-SCOP Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0G2K432 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GHL5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LBK7_RAT UniProtKB/TrEMBL
  A0ABK0LSD9_RAT UniProtKB/TrEMBL
  A6I3T3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Zcwpw2  zinc finger CW-type and PWWP domain containing 2  Zcwpw2  zinc finger, CW type with PWWP domain 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-04-21 Zcwpw2  zinc finger, CW type with PWWP domain 2  LOC681381  similar to Zinc finger CW-type PWWP domain protein 1 homolog  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC681381  similar to Zinc finger CW-type PWWP domain protein 1 homolog  LOC687125  similar to Zinc finger CW-type PWWP domain protein 1 homolog  Data merged from RGD:1588961 1643240 APPROVED
2006-11-20 LOC681381  similar to Zinc finger CW-type PWWP domain protein 1 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687125  similar to Zinc finger CW-type PWWP domain protein 1 homolog      Symbol and Name status set to provisional 70820 PROVISIONAL