Snx29 (sorting nexin 29) - Rat Genome Database

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Gene: Snx29 (sorting nexin 29) Rattus norvegicus
Analyze
Symbol: Snx29
Name: sorting nexin 29
RGD ID: 1596162
Description: Predicted to enable phosphatidylinositol binding activity. Orthologous to several human genes including SNX29 (sorting nexin 29); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; amphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC363536; LOC689142; RGD1565890; RUN domain containing 2A; RUN domain-containing protein 2A; Rundc2a; similar to kinesin-like motor protein C20orf23; similar to RUN domain containing 2A; sorting nexin-29
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,391,866 - 4,805,682 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl104,394,544 - 4,813,772 (-)EnsemblGRCr8
mRatBN7.2103,884,880 - 4,298,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx108,584,989 - 8,995,316 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,407,069 - 8,516,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0103,747,428 - 4,154,657 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,838,444 - 4,249,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)Ensemblrn6Rnor6.0
Rnor_5.0102,706,984 - 3,115,798 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4103,765,525 - 4,114,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera102,920,618 - 3,322,387 (-)NCBICelera
Cytogenetic Map10q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,1-dichloroethene  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amphetamine  (EXP)
aristolochic acid A  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
copper atom  (EXP)
copper(0)  (EXP)
coumarin  (ISO)
coumestrol  (ISO)
dichloroacetic acid  (ISO)
Enterolactone  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
lipopolysaccharide  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
N,N-diethyl-m-toluamide  (EXP)
O-methyleugenol  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
potassium chromate  (ISO)
rac-lactic acid  (ISO)
resveratrol  (ISO)
sodium arsenite  (ISO)
thioacetamide  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:16782399   PMID:23376485  


Genomics

Comparative Map Data
Snx29
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8104,391,866 - 4,805,682 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl104,394,544 - 4,813,772 (-)EnsemblGRCr8
mRatBN7.2103,884,880 - 4,298,699 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx108,584,989 - 8,995,316 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0108,407,069 - 8,516,409 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0103,747,428 - 4,154,657 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,838,444 - 4,249,741 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)Ensemblrn6Rnor6.0
Rnor_5.0102,706,984 - 3,115,798 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4103,765,525 - 4,114,661 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera102,920,618 - 3,322,387 (-)NCBICelera
Cytogenetic Map10q11NCBI
SNX29
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381611,976,734 - 12,574,287 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1611,976,734 - 12,574,287 (+)Ensemblhg38GRCh38
GRCh371612,070,591 - 12,668,144 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361612,053,556 - 12,575,647 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341611,978,102 - 12,054,642NCBI
Celera1612,320,697 - 12,843,213 (+)NCBICelera
Cytogenetic Map16p13.13-p13.12NCBI
HuRef1611,986,415 - 12,585,152 (+)NCBIHuRef
CHM1_11612,070,651 - 12,668,086 (+)NCBICHM1_1
T2T-CHM13v2.01612,012,847 - 12,611,331 (+)NCBIT2T-CHM13v2.0
Snx29
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391611,140,719 - 11,576,959 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1611,140,772 - 11,573,336 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381611,322,861 - 11,759,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1611,322,908 - 11,755,472 (+)Ensemblmm10GRCm38
MGSCv371611,405,741 - 11,755,565 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361611,319,226 - 11,669,050 (+)NCBIMGSCv36mm8
Celera1612,036,249 - 12,386,189 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map166.46NCBI
Snx29
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554426,099,356 - 6,607,285 (-)Ensembl
ChiLan1.0NW_0049554426,082,362 - 6,607,440 (-)NCBIChiLan1.0ChiLan1.0
SNX29
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21812,522,863 - 13,116,752 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11616,293,348 - 16,887,544 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01610,914,851 - 11,508,853 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11612,406,883 - 12,936,191 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1612,366,908 - 12,930,480 (+)EnsemblpanPan2panpan1.1
SNX29
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1630,314,165 - 30,822,176 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl630,318,366 - 30,822,230 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha631,683,735 - 32,218,323 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0630,486,660 - 31,015,641 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl630,489,648 - 31,015,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1630,301,320 - 30,829,702 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0630,176,220 - 30,704,361 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0630,598,943 - 31,127,625 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Snx29
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,835,111 - 113,190,458 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501933,066 - 1,285,235 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936501933,000 - 1,288,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNX29
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl330,584,951 - 31,133,317 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1330,584,707 - 31,133,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2331,471,464 - 31,614,167 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SNX29
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1511,448,178 - 12,078,346 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl511,448,195 - 12,031,613 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606818,033,408 - 18,685,992 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snx29
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247825,787,419 - 6,326,363 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247825,788,325 - 6,326,476 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Snx29
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1910,554,704 - 10,959,769 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Snx29
3342 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:138
Count of miRNA genes:105
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000003150
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
1549898Neuinf3Neuroinflammation QTL 326.4nervous system integrity trait (VT:0010566)MHC Class II RT1A-positive spinal cord ventral horn area to total spinal cord ventral horn area ratio (CMO:0001980)1015893911Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat

Markers in Region
RH139466  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2103,971,140 - 3,971,322 (+)MAPPERmRatBN7.2
Rnor_6.0103,925,841 - 3,926,022NCBIRnor6.0
Rnor_5.0102,792,589 - 2,792,770UniSTSRnor5.0
RGSC_v3.4103,849,651 - 3,849,832UniSTSRGSC3.4
Celera103,002,306 - 3,002,487UniSTS
Cytogenetic Map10q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086861 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086862 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063269879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489945 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000003150   ⟹   ENSRNOP00000003150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,395,364 - 4,789,194 (-)Ensembl
mRatBN7.2 Ensembl103,888,378 - 4,282,410 (-)Ensembl
Rnor_6.0 Ensembl103,840,622 - 4,249,739 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000035886   ⟹   ENSRNOP00000034356
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,395,287 - 4,813,772 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101337   ⟹   ENSRNOP00000080569
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,395,287 - 4,736,185 (-)Ensembl
mRatBN7.2 Ensembl103,888,301 - 4,229,041 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112304   ⟹   ENSRNOP00000086300
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,395,287 - 4,805,641 (-)Ensembl
mRatBN7.2 Ensembl103,888,301 - 4,298,655 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164121   ⟹   ENSRNOP00000104452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,394,544 - 4,805,641 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000167540   ⟹   ENSRNOP00000107115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl104,395,287 - 4,790,638 (-)Ensembl
RefSeq Acc Id: NM_001109526   ⟹   NP_001102996
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,395,287 - 4,805,641 (-)NCBI
mRatBN7.2103,888,301 - 4,298,655 (-)NCBI
Rnor_6.0103,841,865 - 4,249,715 (-)NCBI
Rnor_5.0102,706,984 - 3,115,798 (-)NCBI
RGSC_v3.4103,765,525 - 4,114,661 (-)RGD
Celera102,920,618 - 3,322,387 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767499   ⟹   XP_008765721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,739,301 (-)NCBI
mRatBN7.2103,884,880 - 4,232,332 (-)NCBI
Rnor_6.0103,838,444 - 4,182,418 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086857   ⟹   XP_038942785
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,794,032 (-)NCBI
mRatBN7.2103,884,880 - 4,287,047 (-)NCBI
RefSeq Acc Id: XM_039086858   ⟹   XP_038942786
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,794,035 (-)NCBI
mRatBN7.2103,884,880 - 4,287,049 (-)NCBI
RefSeq Acc Id: XM_039086859   ⟹   XP_038942787
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,805,682 (-)NCBI
mRatBN7.2103,884,880 - 4,298,699 (-)NCBI
RefSeq Acc Id: XM_039086860   ⟹   XP_038942788
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,794,034 (-)NCBI
mRatBN7.2103,884,880 - 4,287,048 (-)NCBI
RefSeq Acc Id: XM_039086861   ⟹   XP_038942789
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,441,370 - 4,794,037 (-)NCBI
mRatBN7.2103,936,931 - 4,287,049 (-)NCBI
RefSeq Acc Id: XM_039086862   ⟹   XP_038942790
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,445,029 - 4,794,036 (-)NCBI
mRatBN7.2103,938,097 - 4,287,049 (-)NCBI
RefSeq Acc Id: XM_039086863   ⟹   XP_038942791
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,479,451 - 4,794,036 (-)NCBI
mRatBN7.2103,970,778 - 4,287,048 (-)NCBI
RefSeq Acc Id: XM_039086864   ⟹   XP_038942792
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,587,612 - 4,794,038 (-)NCBI
mRatBN7.2104,091,293 - 4,287,051 (-)NCBI
RefSeq Acc Id: XM_039086865   ⟹   XP_038942793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,541,116 - 4,794,036 (-)NCBI
mRatBN7.2104,031,737 - 4,287,048 (-)NCBI
RefSeq Acc Id: XM_039086867   ⟹   XP_038942795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,743,189 (-)NCBI
mRatBN7.2103,884,880 - 4,236,215 (-)NCBI
RefSeq Acc Id: XM_063269879   ⟹   XP_063125949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,391,866 - 4,769,571 (-)NCBI
RefSeq Acc Id: XR_005489945
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8104,487,407 - 4,794,035 (-)NCBI
mRatBN7.2103,980,421 - 4,287,048 (-)NCBI
RefSeq Acc Id: NP_001102996   ⟸   NM_001109526
- UniProtKB: A0A8I6A5K5 (UniProtKB/TrEMBL),   D3ZMN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008765721   ⟸   XM_008767499
- Peptide Label: isoform X12
- UniProtKB: A0A8I5ZQH2 (UniProtKB/TrEMBL),   A6K4H0 (UniProtKB/TrEMBL),   A6K4H1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000003150   ⟸   ENSRNOT00000003150
RefSeq Acc Id: XP_038942787   ⟸   XM_039086859
- Peptide Label: isoform X3
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942786   ⟸   XM_039086858
- Peptide Label: isoform X2
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942788   ⟸   XM_039086860
- Peptide Label: isoform X4
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942785   ⟸   XM_039086857
- Peptide Label: isoform X1
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942795   ⟸   XM_039086867
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038942789   ⟸   XM_039086861
- Peptide Label: isoform X5
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942790   ⟸   XM_039086862
- Peptide Label: isoform X6
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942791   ⟸   XM_039086863
- Peptide Label: isoform X7
- UniProtKB: D3ZMN5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942793   ⟸   XM_039086865
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038942792   ⟸   XM_039086864
- Peptide Label: isoform X9
Ensembl Acc Id: ENSRNOP00000086300   ⟸   ENSRNOT00000112304
Ensembl Acc Id: ENSRNOP00000080569   ⟸   ENSRNOT00000101337
RefSeq Acc Id: XP_063125949   ⟸   XM_063269879
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000107115   ⟸   ENSRNOT00000167540
Ensembl Acc Id: ENSRNOP00000104452   ⟸   ENSRNOT00000164121
Ensembl Acc Id: ENSRNOP00000034356   ⟸   ENSRNOT00000035886
Protein Domains
PX

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZMN5-F1-model_v2 AlphaFold D3ZMN5 1-809 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696933
Promoter ID:EPDNEW_R7458
Type:initiation region
Name:Snx29_1
Description:sorting nexin 29
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0104,249,770 - 4,249,830EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596162 AgrOrtholog
BioCyc Gene G2FUF-26176 BioCyc
Ensembl Genes ENSRNOG00000002294 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003150.7 UniProtKB/TrEMBL
  ENSRNOT00000101337 ENTREZGENE
  ENSRNOT00000101337.2 UniProtKB/TrEMBL
  ENSRNOT00000112304 ENTREZGENE
  ENSRNOT00000112304.2 UniProtKB/TrEMBL
  ENSRNOT00000164121.1 UniProtKB/TrEMBL
  ENSRNOT00000167540 ENTREZGENE
  ENSRNOT00000167540.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.900 UniProtKB/TrEMBL
  3.30.1520.10 UniProtKB/TrEMBL
InterPro IPR001683 UniProtKB/TrEMBL
  PX_dom_sf UniProtKB/TrEMBL
  Run UniProtKB/TrEMBL
  Run_dom_sf UniProtKB/TrEMBL
  RUN_SNX29 UniProtKB/TrEMBL
  SNX29_PX UniProtKB/TrEMBL
KEGG Report rno:689142 UniProtKB/TrEMBL
NCBI Gene 689142 ENTREZGENE
PANTHER SORTING NEXIN-29 UniProtKB/TrEMBL
  SORTING NEXIN-29-RELATED UniProtKB/TrEMBL
Pfam PF00787 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
PhenoGen Snx29 PhenoGen
PROSITE PS50195 UniProtKB/TrEMBL
  RUN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002294 RatGTEx
SMART RUN UniProtKB/TrEMBL
  SM00312 UniProtKB/TrEMBL
Superfamily-SCOP 64268 UniProtKB/TrEMBL
  SSF140741 UniProtKB/TrEMBL
UniProt A0A8I5ZQH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A5K5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LG55_RAT UniProtKB/TrEMBL
  A0ABK0LN68_RAT UniProtKB/TrEMBL
  A6K4H0 ENTREZGENE, UniProtKB/TrEMBL
  A6K4H1 ENTREZGENE, UniProtKB/TrEMBL
  D3ZMN5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Snx29  sorting nexin 29  LOC687335  similar to kinesin-like motor protein C20orf23  Data merged from RGD:1586562 1643240 APPROVED
2011-08-16 Snx29  sorting nexin 29  Rundc2a  RUN domain containing 2A   Data merged from RGD:1565890 737654 APPROVED
2011-05-26 Rundc2a  RUN domain containing 2A   RGD1565890  similar to RUN domain containing 2A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565890  similar to RUN domain containing 2A   RGD1565890_predicted  similar to RUN domain containing 2A (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-31 Snx29  sorting nexin 29  LOC689142  similar to kinesin-like motor protein C20orf23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC689142  similar to kinesin-like motor protein C20orf23      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687335  similar to kinesin-like motor protein C20orf23      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1565890_predicted  similar to RUN domain containing 2A (predicted)  LOC363536  similar to RUN domain containing 2A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363536  similar to RUN domain containing 2A      Symbol and Name status set to provisional 70820 PROVISIONAL