Col13a1 (collagen type XIII alpha 1 chain) - Rat Genome Database

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Gene: Col13a1 (collagen type XIII alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col13a1
Name: collagen type XIII alpha 1 chain
RGD ID: 1595704
Description: Predicted to enable heparin binding activity. Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in several processes, including cell-matrix adhesion; endochondral ossification; and morphogenesis of a branching structure. Predicted to be located in cell-cell junction. Predicted to be part of collagen trimer. Predicted to be active in basement membrane. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 19. Orthologous to human COL13A1 (collagen type XIII alpha 1 chain); PARTICIPATES IN syndecan signaling pathway; INTERACTS WITH 6-propyl-2-thiouracil; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: collagen alpha-1(XIII) chain; collagen, type XIII, alpha 1; LOC499431; procollagen, type XIII, alpha 1; similar to alpha 1 type XIII collagen isoform 17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,326,744 - 30,466,800 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)EnsemblGRCr8
mRatBN7.22029,783,965 - 29,924,116 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2030,794,932 - 30,934,985 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,185,849 - 30,325,902 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02030,928,630 - 31,068,686 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,456,502 - 31,598,360 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,456,852 - 31,598,118 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,254,962 - 33,395,070 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42029,208,654 - 29,348,751 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2031,209,120 - 31,348,066 (-)NCBICelera
Cytogenetic Map20q11NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
calcitriol  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP,ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
dimethylarsinous acid  (ISO)
dioxygen  (ISO)
diquat  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
formaldehyde  (ISO)
fulvestrant  (ISO)
irinotecan  (ISO)
isoflavones  (ISO)
lead diacetate  (EXP)
lipopolysaccharide  (ISO)
lithium chloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
mifepristone  (EXP)
mono(2-ethylhexyl) phthalate  (ISO)
Octicizer  (ISO)
oxaliplatin  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
pentane-2,3-dione  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
simvastatin  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sotorasib  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
titanium dioxide  (ISO)
trametinib  (ISO)
tributyl phosphate  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
trimellitic anhydride  (ISO)
triphenyl phosphate  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
tris(2-chloroethyl) phosphate  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10865988   PMID:11470398   PMID:11956183   PMID:12477932   PMID:38643753  


Genomics

Comparative Map Data
Col13a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,326,744 - 30,466,800 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)EnsemblGRCr8
mRatBN7.22029,783,965 - 29,924,116 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2030,794,932 - 30,934,985 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,185,849 - 30,325,902 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02030,928,630 - 31,068,686 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02031,456,502 - 31,598,360 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2031,456,852 - 31,598,118 (-)Ensemblrn6Rnor6.0
Rnor_5.02033,254,962 - 33,395,070 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42029,208,654 - 29,348,751 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2031,209,120 - 31,348,066 (-)NCBICelera
Cytogenetic Map20q11NCBI
COL13A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,801,906 - 69,959,144 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,801,880 - 69,964,275 (+)Ensemblhg38GRCh38
GRCh371071,561,662 - 71,718,900 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361071,231,650 - 71,388,909 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1064,838,564 - 64,996,131 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1065,553,122 - 65,710,673 (+)NCBIHuRef
CHM1_11071,843,392 - 72,000,665 (+)NCBICHM1_1
T2T-CHM13v2.01070,670,103 - 70,827,646 (+)NCBIT2T-CHM13v2.0
Col13a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391061,674,013 - 61,814,985 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1061,674,015 - 61,814,887 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381061,838,234 - 61,979,206 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1061,838,236 - 61,979,108 (-)Ensemblmm10GRCm38
MGSCv371061,301,246 - 61,441,856 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361061,233,855 - 61,374,465 (-)NCBIMGSCv36mm8
Celera1062,940,611 - 63,081,159 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.29NCBI
Col13a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,256,636 - 21,392,814 (-)Ensembl
ChiLan1.0NW_00495543721,256,410 - 21,393,385 (-)NCBIChiLan1.0ChiLan1.0
LOC100973165
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2882,027,140 - 82,114,312 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11082,032,461 - 82,119,416 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01066,277,302 - 66,434,410 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,806,841 - 68,964,088 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,807,425 - 68,963,642 (+)EnsemblpanPan2panpan1.1
COL13A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,838,163 - 20,987,412 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,837,650 - 20,986,962 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha420,971,110 - 21,119,964 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0421,113,705 - 21,262,719 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl421,113,238 - 21,262,795 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1421,012,409 - 21,161,238 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0421,216,918 - 21,365,710 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0421,561,379 - 21,710,027 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Col13a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,100,636 - 60,239,816 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365218,588,809 - 8,732,002 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365218,588,568 - 8,643,786 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL13A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,787,303 - 72,953,095 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11472,786,780 - 72,953,093 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,706,033 - 78,871,075 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103216065
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1961,342,482 - 61,500,072 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl961,344,481 - 61,499,539 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604822,080,101 - 22,237,649 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col13a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247544,017,900 - 4,162,764 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247544,016,873 - 4,163,065 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Col13a1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11827,663,043 - 27,802,577 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Col13a1
895 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:202
Count of miRNA genes:140
Interacting mature miRNAs:156
Transcripts:ENSRNOT00000046537
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)20418947649189476Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202668936256021148Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20133724594Rat
7411668Foco32Food consumption QTL 3280.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)20136600300Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20153308346533083Rat
1558640Prcs2Prostate cancer susceptibility QTL 23.3prostate integrity trait (VT:0010571)percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)20134066551Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)202074558556021148Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202668936256021148Rat
1598870Bp289Blood pressure QTL 2892.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)20821635953216359Rat
1598858Cm61Cardiac mass QTL 613.6heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)20821635953216359Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202679235356021148Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)201224324249189476Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202668936256021148Rat
6893685Bw111Body weight QTL 1112.70.004body mass (VT:0001259)body weight (CMO:0000012)20132578510Rat
9590252Scort12Serum corticosterone level QTL 1220.460.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)20136600300Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202668936256021148Rat

Markers in Region
D20Got30  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22029,843,196 - 29,843,387 (+)MAPPERmRatBN7.2
Rnor_6.02031,515,735 - 31,515,923NCBIRnor6.0
Rnor_5.02033,313,286 - 33,313,474UniSTSRnor5.0
RGSC_v3.42029,267,613 - 29,267,802RGDRGSC3.4
RGSC_v3.42029,267,614 - 29,267,802UniSTSRGSC3.4
Celera2031,268,035 - 31,268,223UniSTS
RGSC_v3.12029,281,413 - 29,281,602RGD
Cytogenetic Map20q11UniSTS
RH144219  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22029,923,658 - 29,923,818 (+)MAPPERmRatBN7.2
Rnor_6.02031,597,925 - 31,598,084NCBIRnor6.0
Rnor_5.02033,394,668 - 33,394,827UniSTSRnor5.0
RGSC_v3.42029,348,378 - 29,348,537UniSTSRGSC3.4
Celera2031,347,693 - 31,347,852UniSTS
Cytogenetic Map20q11UniSTS
BI275884  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22029,819,586 - 29,819,757 (+)MAPPERmRatBN7.2
Rnor_6.02031,492,123 - 31,492,293NCBIRnor6.0
Rnor_5.02033,289,746 - 33,289,916UniSTSRnor5.0
RGSC_v3.42029,244,031 - 29,244,201UniSTSRGSC3.4
Celera2031,244,547 - 31,244,717UniSTS
Cytogenetic Map20q11UniSTS
AU048925  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22029,864,779 - 29,864,967 (+)MAPPERmRatBN7.2
Rnor_6.02031,537,314 - 31,537,501NCBIRnor6.0
Rnor_5.02033,334,865 - 33,335,052UniSTSRnor5.0
RGSC_v3.42029,289,193 - 29,289,380UniSTSRGSC3.4
Celera2031,289,568 - 31,289,755UniSTS
Cytogenetic Map20q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
17 13 70 155 91 90 59 94 59 6 376 207 22 121 85 95 31 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000046537   ⟹   ENSRNOP00000042926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
mRatBN7.2 Ensembl2029,785,785 - 29,924,032 (-)Ensembl
Rnor_6.0 Ensembl2031,456,852 - 31,598,118 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000085877   ⟹   ENSRNOP00000072337
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)Ensembl
Rnor_6.0 Ensembl2031,458,322 - 31,597,830 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098211   ⟹   ENSRNOP00000084135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102397   ⟹   ENSRNOP00000083370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107190   ⟹   ENSRNOP00000087411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
mRatBN7.2 Ensembl2029,783,965 - 29,924,032 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000172136   ⟹   ENSRNOP00000106370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2030,326,744 - 30,466,800 (-)Ensembl
RefSeq Acc Id: NM_001109172   ⟹   NP_001102642
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82030,326,744 - 30,466,800 (-)NCBI
mRatBN7.22029,783,965 - 29,924,032 (-)NCBI
Rnor_6.02031,456,502 - 31,598,298 (-)NCBI
Rnor_5.02033,254,962 - 33,395,070 (-)NCBI
RGSC_v3.42029,208,654 - 29,348,751 (-)RGD
Celera2031,209,120 - 31,348,066 (-)RGD
Sequence:
RefSeq Acc Id: XM_063279469   ⟹   XP_063135539
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82030,326,744 - 30,407,879 (-)NCBI
RefSeq Acc Id: NP_001102642   ⟸   NM_001109172
- UniProtKB: A0A0G2K2Q8 (UniProtKB/TrEMBL),   A6K424 (UniProtKB/TrEMBL),   A0A8I5ZZ94 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042926   ⟸   ENSRNOT00000046537
Ensembl Acc Id: ENSRNOP00000072337   ⟸   ENSRNOT00000085877
Ensembl Acc Id: ENSRNOP00000087411   ⟸   ENSRNOT00000107190
Ensembl Acc Id: ENSRNOP00000083370   ⟸   ENSRNOT00000102397
Ensembl Acc Id: ENSRNOP00000084135   ⟸   ENSRNOT00000098211
RefSeq Acc Id: XP_063135539   ⟸   XM_063279469
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000106370   ⟸   ENSRNOT00000172136

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2Q8-F1-model_v2 AlphaFold A0A0G2K2Q8 1-739 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1595704 AgrOrtholog
BioCyc Gene G2FUF-3710 BioCyc
Ensembl Genes ENSRNOG00000000552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046537.6 UniProtKB/TrEMBL
  ENSRNOT00000085877 ENTREZGENE
  ENSRNOT00000085877.3 UniProtKB/TrEMBL
  ENSRNOT00000098211.2 UniProtKB/TrEMBL
  ENSRNOT00000102397.2 UniProtKB/TrEMBL
  ENSRNOT00000107190.2 UniProtKB/TrEMBL
  ENSRNOT00000172136.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9098304 IMAGE-MGC_LOAD
InterPro Collagen UniProtKB/TrEMBL
  Collagen_Structural_Proteins UniProtKB/TrEMBL
KEGG Report rno:499431 UniProtKB/TrEMBL
MGC_CLONE MGC:187895 IMAGE-MGC_LOAD
NCBI Gene 499431 ENTREZGENE
PANTHER COLLAGEN TYPE XIII ALPHA 1 CHAIN UniProtKB/TrEMBL
  SI:CH211-266K2.1 UniProtKB/TrEMBL
Pfam Collagen UniProtKB/TrEMBL
PhenoGen Col13a1 PhenoGen
RatGTEx ENSRNOG00000000552 RatGTEx
UniProt A0A0G2K2Q8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZZ94 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GBH4_RAT UniProtKB/TrEMBL
  A0A8I6GF41_RAT UniProtKB/TrEMBL
  A0ABK0LR91_RAT UniProtKB/TrEMBL
  A0ABZ3NNL3_RAT UniProtKB/TrEMBL
  A6K424 ENTREZGENE, UniProtKB/TrEMBL
  B1WC63_RAT UniProtKB/TrEMBL
UniProt Secondary D3ZSF4 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-01 Col13a1  collagen type XIII alpha 1 chain  Col13a1  collagen, type XIII, alpha 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Col13a1  collagen, type XIII, alpha 1  LOC499431  similar to alpha 1 type XIII collagen isoform 17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC499431  similar to alpha 1 type XIII collagen isoform 17      Symbol and Name status set to provisional 70820 PROVISIONAL