Styx (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 15 | 21,043,738 - 21,075,515 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | mRatBN7.2 | 15 | 18,565,214 - 18,595,797 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 15 | 18,564,633 - 18,593,524 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 15 | 21,360,166 - 21,387,716 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 15 | 22,317,123 - 22,344,673 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 15 | 20,573,697 - 20,601,247 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 15 | 19,690,079 - 19,720,683 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 15 | 19,690,194 - 19,717,774 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 15 | 23,654,221 - 23,684,839 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 15 | 21,241,269 - 21,257,477 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 15 | 18,993,717 - 19,021,297 (+) | NCBI | | Celera | | | Cytogenetic Map | 15 | p14 | NCBI | | | | |
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STYX (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 14 | 52,730,166 - 52,774,989 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 14 | 52,730,043 - 52,774,989 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 14 | 53,196,884 - 53,241,707 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 14 | 52,266,682 - 52,309,232 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | 14 | 52,266,681 - 52,309,230 | NCBI | | | | | Celera | 14 | 33,246,562 - 33,291,384 (+) | NCBI | | Celera | | | Cytogenetic Map | 14 | q22.1 | NCBI | | | | | HuRef | 14 | 33,357,870 - 33,402,695 (+) | NCBI | | HuRef | | | CHM1_1 | 14 | 53,135,768 - 53,180,604 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 14 | 46,937,959 - 46,982,783 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Styx (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955409 | 10,428,556 - 10,445,880 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955409 | 10,428,556 - 10,445,384 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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STYX (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 15 | 53,861,108 - 53,905,919 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 14 | 53,077,618 - 53,122,386 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 14 | 33,326,587 - 33,371,399 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 14 | 51,610,195 - 51,654,978 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 14 | 51,610,523 - 51,651,096 (+) | Ensembl | | | panPan2 | panpan1.1 |
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STYX (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 8 | 28,949,732 - 28,990,455 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 8 | 28,950,061 - 28,986,812 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 8 | 28,694,245 - 28,734,942 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 8 | 29,115,959 - 29,157,083 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 8 | 29,116,029 - 29,157,068 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 8 | 28,790,130 - 28,830,989 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 8 | 28,862,414 - 28,903,709 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 8 | 29,191,141 - 29,232,324 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Styx (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024408640 | 76,312,721 - 76,346,356 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936697 | 2,088,043 - 2,120,586 (-) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936697 | 2,087,689 - 2,120,507 (-) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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STYX (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 1 | 182,357,607 - 182,407,782 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 1 | 182,357,597 - 182,407,792 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 1 | 202,628,192 - 202,678,332 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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STYX (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 24 | 29,809,827 - 29,860,475 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 24 | 29,809,806 - 29,856,608 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666053 | 18,084,438 - 18,132,386 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Styx (Heterocephalus glaber - naked mole-rat) |
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Styx (Rattus rattus - black rat) |
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