Styx (serine/threonine/tyrosine interacting protein) - Rat Genome Database

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Gene: Styx (serine/threonine/tyrosine interacting protein) Ictidomys tridecemlineatus
Analyze
Symbol: Styx
Name: serine/threonine/tyrosine interacting protein
RGD ID: 12620371
Description: ENCODES a protein that exhibits F-box domain binding (inferred); pseudophosphatase activity (inferred); INVOLVED IN spermatogenesis (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,312,721 - 76,346,356 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366972,088,043 - 2,120,586 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366972,087,689 - 2,120,507 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Styx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864076,312,721 - 76,346,356 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366972,088,043 - 2,120,586 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366972,087,689 - 2,120,507 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STYX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381452,730,166 - 52,774,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1452,730,166 - 52,774,989 (+)EnsemblGRCh38hg38GRCh38
GRCh371453,196,884 - 53,241,707 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361452,266,682 - 52,309,232 (+)NCBINCBI36Build 36hg18NCBI36
Build 341452,266,681 - 52,309,230NCBI
Celera1433,246,562 - 33,291,384 (+)NCBICelera
Cytogenetic Map14q22.1NCBI
HuRef1433,357,870 - 33,402,695 (+)NCBIHuRef
CHM1_11453,135,768 - 53,180,604 (+)NCBICHM1_1
T2T-CHM13v2.01446,937,959 - 46,982,783 (+)NCBIT2T-CHM13v2.0
Styx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391445,588,534 - 45,614,608 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1445,588,550 - 45,660,277 (+)EnsemblGRCm39 Ensembl
GRCm381445,351,186 - 45,376,884 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1445,351,093 - 45,422,820 (+)EnsemblGRCm38mm10GRCm38
MGSCv371445,970,861 - 45,996,559 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361444,273,063 - 44,298,761 (+)NCBIMGSCv36mm8
Celera1441,531,156 - 41,556,813 (+)NCBICelera
Cytogenetic Map14C1NCBI
cM Map1422.9NCBI
Styx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81521,043,738 - 21,075,515 (+)NCBIGRCr8
mRatBN7.21518,565,214 - 18,595,797 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1518,564,633 - 18,593,524 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1521,360,166 - 21,387,716 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01522,317,123 - 22,344,673 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01520,573,697 - 20,601,247 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01519,690,079 - 19,720,683 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1519,690,194 - 19,717,774 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01523,654,221 - 23,684,839 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41521,241,269 - 21,257,477 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1518,993,717 - 19,021,297 (+)NCBICelera
Cytogenetic Map15p14NCBI
Styx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540910,428,556 - 10,445,880 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540910,428,556 - 10,445,384 (-)NCBIChiLan1.0ChiLan1.0
STYX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21553,861,108 - 53,905,919 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11453,077,618 - 53,122,386 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01433,326,587 - 33,371,399 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11451,610,195 - 51,654,978 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1451,610,523 - 51,651,096 (+)Ensemblpanpan1.1panPan2
STYX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1828,949,732 - 28,990,455 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl828,950,061 - 28,986,812 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha828,694,245 - 28,734,942 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0829,115,959 - 29,157,083 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl829,116,029 - 29,157,068 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1828,790,130 - 28,830,989 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0828,862,414 - 28,903,709 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0829,191,141 - 29,232,324 (+)NCBIUU_Cfam_GSD_1.0
STYX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1182,357,607 - 182,407,782 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11182,357,597 - 182,407,792 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21202,628,192 - 202,678,332 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STYX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12429,809,827 - 29,860,475 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2429,809,806 - 29,856,608 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605318,084,438 - 18,132,386 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Styx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473116,352,503 - 16,384,624 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473116,342,926 - 16,384,673 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000014506   ⟹   ENSSTOP00000012997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366972,091,154 - 2,106,193 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000038443   ⟹   ENSSTOP00000030187
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366972,088,043 - 2,120,586 (-)Ensembl
RefSeq Acc Id: XM_005337974   ⟹   XP_005338031
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864076,315,305 - 76,346,356 (-)NCBI
SpeTri2.0NW_0049366972,087,689 - 2,120,507 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005729091
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440864076,312,721 - 76,346,356 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005338031 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012997.3
  ENSSTOP00000030187.1
GenBank Protein KAG3261426 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005338031   ⟸   XM_005337974
- UniProtKB: A0A287D9E5 (UniProtKB/TrEMBL),   I3MN23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012997   ⟸   ENSSTOT00000014506
RefSeq Acc Id: ENSSTOP00000030187   ⟸   ENSSTOT00000038443
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000014504 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000014506.3 UniProtKB/TrEMBL
  ENSSTOT00000038443.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.190.10 UniProtKB/TrEMBL
InterPro Dual-sp_phosphatase_cat-dom UniProtKB/TrEMBL
  Prot-tyrosine_phosphatase-like UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL_dom UniProtKB/TrEMBL
NCBI Gene Styx ENTREZGENE
PANTHER SERINE/THREONINE/TYROSINE-INTERACTING PROTEIN UniProtKB/TrEMBL
  SERINE/THREONINE/TYROSINE-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam DSPc UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_2 UniProtKB/TrEMBL
  TYR_PHOSPHATASE_DUAL UniProtKB/TrEMBL
SMART DSPc UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/TrEMBL
UniProt A0A287D9E5 ENTREZGENE, UniProtKB/TrEMBL
  I3MN23 ENTREZGENE, UniProtKB/TrEMBL