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Gene: Mxra7 (matrix remodeling associated 7) Rattus norvegicus

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Symbol:

Mxra7

Name:

matrix remodeling associated 7

RGD ID:

1594666

Description:

Predicted to be involved in megakaryocyte differentiation. Predicted to be located in membrane. Orthologous to human MXRA7 (matrix remodeling associated 7); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC690599; matrix-remodeling-associated protein 7; matrix-remodelling associated 7; similar to Transmembrane anchor protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MXRA7 (matrix remodeling associated 7)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, Panther, Treefam
Mus musculus (house mouse):	Mxra7 (matrix-remodelling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Mxra7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MXRA7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MXRA7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Mxra7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MXRA7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MXRA7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Mxra7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Mxra7 (matrix remodeling associated 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	MXRA7 (matrix remodeling associated 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MXRA7 (matrix remodeling associated 7)	Alliance	DIOPT (HGNC\|InParanoid\|OMA\|OrthoFinder\|SonicParanoid)
Mus musculus (house mouse):	Mxra7 (matrix-remodelling associated 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Mxra7 (matrix-remodelling associated 7)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	mxra7 (matrix-remodelling associated 7)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C05G5.3	Alliance	DIOPT (Hieranoid\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7407	Alliance	DIOPT (Hieranoid\|OrthoFinder)
Drosophila melanogaster (fruit fly):	CG7407	Alliance	DIOPT (PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	mxra7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	mxra7	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder)
Xenopus tropicalis (tropical clawed frog):	mphosph6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,501,848 - 102,530,231 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	102,489,604 - 102,530,231 (-)	Ensembl				GRCr8
mRatBN7.2	10	102,003,034 - 102,031,428 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	102,003,319 - 102,031,409 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	107,110,038 - 107,135,376 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,573,126 - 106,598,465 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,923,886 - 101,952,258 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	105,743,669 - 105,772,038 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	105,745,276 - 105,771,972 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	106,905,636 - 106,921,646 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	100,574,697 - 100,599,867 (-)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3-dimethoxynaphthalene-1,4-dione (ISO)

2-methylcholine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

Bisphenol B (ISO)

bisphenol F (ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

choline (ISO)

copper atom (ISO)

copper(0) (ISO)

coumarin (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gallic acid (ISO)

genistein (ISO)

hydrogen peroxide (ISO)

indometacin (ISO)

ivermectin (ISO)

L-methionine (ISO)

lead(0) (ISO)

methapyrilene (ISO)

N-nitrosodimethylamine (ISO)

nickel atom (ISO)

ozone (ISO)

panobinostat (ISO)

perfluorohexanesulfonic acid (ISO)

phenobarbital (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

temozolomide (ISO)

tetrachloromethane (EXP,ISO)

trichostatin A (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

megakaryocyte differentiation (ISO)

Cellular Component

endoplasmic reticulum (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:27559042

Genomics

Comparative Map Data

Mxra7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	102,501,848 - 102,530,231 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	10	102,489,604 - 102,530,231 (-)	Ensembl				GRCr8
mRatBN7.2	10	102,003,034 - 102,031,428 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	102,003,319 - 102,031,409 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	107,110,038 - 107,135,376 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	106,573,126 - 106,598,465 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	101,923,886 - 101,952,258 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	105,743,669 - 105,772,038 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	105,745,276 - 105,771,972 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	106,905,636 - 106,921,646 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	100,574,697 - 100,599,867 (-)	NCBI		Celera
Cytogenetic Map	10	q32.2	NCBI

MXRA7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	76,672,551 - 76,710,965 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	76,672,551 - 76,711,004 (-)	Ensembl			hg38	GRCh38
GRCh37	17	74,668,633 - 74,707,047 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	72,183,404 - 72,218,651 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	17	71,264,179 - 71,299,424 (-)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	70,099,637 - 70,134,755 (-)	NCBI		HuRef
CHM1_1	17	74,736,786 - 74,771,855 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	17	77,569,376 - 77,607,924 (-)	NCBI		T2T-CHM13v2.0

Mxra7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	116,694,226 - 116,718,953 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	116,693,888 - 116,718,872 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	116,803,400 - 116,828,127 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	116,803,062 - 116,828,046 (-)	Ensembl			mm10	GRCm38
MGSCv37	11	116,664,714 - 116,689,360 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	116,619,494 - 116,644,136 (-)	NCBI		MGSCv36	mm8
Celera	11	128,542,917 - 128,568,280 (-)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	81.49	NCBI

Mxra7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	5,589,754 - 5,622,453 (+)	Ensembl
ChiLan1.0	NW_004955506	5,589,766 - 5,621,133 (+)	NCBI	ChiLan1.0	ChiLan1.0

MXRA7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	92,726,143 - 92,760,867 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	97,553,182 - 97,586,565 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	70,750,936 - 70,788,142 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	76,321,285 - 76,332,659 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	76,324,687 - 76,332,470 (-)	Ensembl			panPan2	panpan1.1

MXRA7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	9	4,730,863 - 4,757,520 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	4,725,426 - 4,752,084 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	9	4,751,066 - 4,777,729 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	4,870,709 - 4,897,367 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	4,951,765 - 4,978,427 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Mxra7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	4,664,553 - 4,677,573 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936594	1,734,386 - 1,747,406 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MXRA7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	12	4,822,306 - 4,866,818 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	4,675,055 - 4,711,203 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MXRA7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	44,971,952 - 45,006,728 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	44,971,892 - 45,003,596 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666077	15,710,200 - 15,746,688 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mxra7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	6,529,006 - 6,559,268 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mxra7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	67,252,063 - 67,276,122 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Mxra7
155 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	237
Count of miRNA genes:	158
Interacting mature miRNAs:	176
Transcripts:	ENSRNOT00000066137, ENSRNOT00000074286
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat

Markers in Region

RH129706

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	102,006,688 - 102,006,871 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	105,747,327 - 105,747,509	NCBI	Rnor6.0
Rnor_5.0	10	105,408,468 - 105,408,650	UniSTS	Rnor5.0
RGSC_v3.4	10	106,907,687 - 106,907,869	UniSTS	RGSC3.4
Celera	10	100,578,357 - 100,578,539	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

RH130113

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	102,009,405 - 102,010,773 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	105,750,044 - 105,751,411	NCBI	Rnor6.0
Rnor_5.0	10	105,411,185 - 105,412,552	UniSTS	Rnor5.0
RGSC_v3.4	10	106,910,404 - 106,911,771	UniSTS	RGSC3.4
Celera	10	100,581,074 - 100,582,441	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

AU047532

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	102,019,712 - 102,020,006 (+)	MAPPER	mRatBN7.2
mRatBN7.2	10	102,019,712 - 102,020,095 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	105,760,349 - 105,760,731	NCBI	Rnor6.0
Rnor_6.0	10	105,760,349 - 105,760,642	NCBI	Rnor6.0
Rnor_5.0	10	105,421,490 - 105,421,872	UniSTS	Rnor5.0
Rnor_5.0	10	105,421,490 - 105,421,783	UniSTS	Rnor5.0
RGSC_v3.4	10	106,920,528 - 106,920,821	UniSTS	RGSC3.4
RGSC_v3.4	10	106,920,528 - 106,920,910	UniSTS	RGSC3.4
Celera	10	100,591,317 - 100,591,699	UniSTS
Celera	10	100,591,317 - 100,591,610	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	82	59	6	346	182	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001398975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006220949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247842	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247843	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840338	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_358018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123144	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000066137 ⟹ ENSRNOP00000059857

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	102,509,572 - 102,530,231 (-)	Ensembl
mRatBN7.2 Ensembl	10	102,009,348 - 102,031,409 (-)	Ensembl
Rnor_6.0 Ensembl	10	105,751,442 - 105,771,972 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000074286 ⟹ ENSRNOP00000066378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	102,489,604 - 102,530,231 (-)	Ensembl
mRatBN7.2 Ensembl	10	102,009,348 - 102,031,409 (-)	Ensembl
Rnor_6.0 Ensembl	10	105,745,276 - 105,771,972 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118072 ⟹ ENSRNOP00000084815

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	102,501,848 - 102,530,231 (-)	Ensembl
mRatBN7.2 Ensembl	10	102,003,319 - 102,031,409 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160162 ⟹ ENSRNOP00000112085

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	102,507,250 - 102,530,231 (-)	Ensembl

RefSeq Acc Id:

NM_001398975 ⟹ NP_001385904

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,501,848 - 102,530,231 (-)	NCBI
mRatBN7.2	10	102,003,034 - 102,031,426 (-)	NCBI

RefSeq Acc Id:

XM_006247842 ⟹ XP_006247904

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,508,018 - 102,530,230 (-)	NCBI
mRatBN7.2	10	102,009,204 - 102,031,428 (-)	NCBI
Rnor_6.0	10	105,748,858 - 105,772,038 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

GTGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCG
CGATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCT
GTTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGG
GACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGG
GACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCA
GGATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCA
GCCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCA
AAGAAGAACTGGAGGAGGAACAGAGGCCCAGCTGGAGGGGGCATCCCCTGACCACACCTCTGTG
CTACGTCTGATGCTGGGGCTTGCAGAGGCTGCTCAGGCTGGCTTCGCCCTCCTGTCTCTGGGTT
CTGGAGAGAAGATAGCTACGAGACAGAACTGGACCCAGCCGAATTTGGGGGAGCGGCCCTAGAA
CCTGTCCCCTGAGAAATAGCACGAGTGCAGAGCTGGTGAGATGGCTCAGCAAATAAAAGTGCTT
GCTGCCAAACCCTGCTGCCTGCCGACCTGAGTCCGATCCTCAAACTAGTTCGATAAATAGGGAG
AGCCCAGTGGTATGAATTGTCCCCCGAGTTCCACAGGCACACATCCACAACATACATACTCTTG
AATCCGCGCAAAACGAATAAAATGTAATAATTAATAATAGTAATAATAATACCCATTCATGTTA
CCACCAAACTAATGAATTACCCTCTCCAGCTGGCGGGGTGCCTGTCTGACTTGCTGACTTGTCC
CTACCAGACTGCCTCCTTCTGTTTCTAGGCTTAGATAAACAGGGAAGCACCCTGTTAGCAGGTG
AACAGTGCAGCATCCCCTCACTTTCAGTCATTAGCTGGGCCGCCACAGCTGCGCCTAGAACCCA
GCTCTTCAGCGGGCTCCCTGCTTCCCCCCACCCCCGGGGTTGATCACACAGTCCTTAGGGAGTG
GCACTTAGGAAGCTGGATGTCCCCAATGGGTTCTCCTACAGTCTCAGTTGAGACTTTCTGCCCC
TGGATCTGCTCAGACAAAACTCCTGTCCAGGGCCTGGGAAGAGAGAAAGCAGTGACCGCTTAAG
TCTTGGCCGCTCTGCACACTAACCTTTTTGAATTCCCTCTGGGTGAACATGCACACTCCTCCTC
CCCTGCTCCCCACATCGGCTCTGTCCCTGCCGCTCTCCAATGCTTCTTTCCAAGGCTTCTATGG
CGGGTGCCACCTCCCTCGTTGTGGATCGTTGGCTAGCGGGCTCTTGCTCTCCCGGGCAGAGAAA
CCCGGCTGGCTTTGCTTCTTAGCAGGATATTCTACCTGCTTGTACACTAACTAAGCTGGTGCTG
ACAGGACAGGACAGGCCCCTCACAATTGTGGCTGACCTGCTGTAGGGCTGTTATCTTTTCGATC
ATGGAAATAAACTGGACCCAAGAAGAGGGTTTCCTATGGCCTATTAGGGCAGTTAGGGAGGTGG
AAACCCCACAGGGCTGAAAGTATGCACTGACTCCGGCGTCCAGCAGAGGGCGCCAAAGGCACAC
AATCAGACCTCTGGCCCTCAGAGAGCTTCTGGGGGAATCTGCAGGGTTAGGTCCAGAGCCCTCG
CGGCAGACTAAGACCCAGGCAGCAGGAAGCAGAAATTATCTAAGGCAATAGGAATGCGTCGGT

hide sequence

RefSeq Acc Id:

XM_006247843 ⟹ XP_006247905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,506,720 - 102,530,229 (-)	NCBI
mRatBN7.2	10	102,006,678 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,747,317 - 105,772,037 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

TGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCGC
GATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCTG
TTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGGG
ACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGGG
ACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCAG
GATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCAG
CCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCAA
AGAAGAACTGGAGGAGGAACAGAGGATTGAGCTGACCTCTGACCTCACCTCCCTGTAGAGGGTC
CCCTAGCCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGAACCGAAGAATAAAGAAGGTGTCC
CTTAGCCTCCTCCTGAAGGCTTTCTTTCCTTTTGACATCCTAAAAGCTTGAGAGAGTTAAAAAA
AAAAAGCCCCCCTCCCTCAGGGAGGAGCCAATGCAGCCTGGGGTGGGGGAGGGTTGCACATTGA
CCAGCCCCTCCTTGGGCTCCCCTGGACTAGCAAGATCCTGGGAATGGCCTTGTCTCTGTCCTTC
TCAGAGGTGTTTATGAGGGGGAAGCTTGCCAACAGTATAGGCTCTGGCTTTTACCAGCCATGTT
TGCTCCCCACACAACCTTCGAGCCCCACCCCACCCCACCCAACACCCCGTTCCCACAATCCCTC
TATGCTTTTGTCCTCACTGAAGCCAAACCACCAGGTTTGAGAAGTAACAGACAAAGGAAGTGAA
GCCCACTGGTGCTCACTTGTGGTCAAGGGTGGTCACCCAGAGATGGTCACCCATACCCACACAC
ATACACCGGGCAGGGGCTCTTTCCGCTCTGGCCGGAATGATTGATACCAGGTATTAGCTTTAAT
ATGGTTTCCCTTTACTCCCACCCACACCCCGGGAGTCCAGGGCTCTCAGTACTAAGAAGCCTTT
TTCACTAGTGTTCTTATCGCCTCAGCCTAGTCTCCACTTTTGCTCGCAGAAGCAGGAACAGTGC
TAGCTTCCAGCAGACTGCTGGATTGTGCATTTTCTAAGGCTTTTTTCCTAGCTGACTCAGAACC
CCCAGCAGATAATCACCCACAGGTCCCAGGTTAGCTTTTCTAGAATTTTATATTTGACAGTATT
TATACCAGACGACTTGGAAGTCGCAGACGTGTTGGCGAAAACATTTTGTGTGTATGTGTGTGTG
TGTTTTTTTTTCCTAAAGCACTAGGTTTTTAGAAGACTTCCCATTTAATGGGAGCCTGGAAAAT
GTCCAACATCGGCTGCTTAGCTGAGTATTCCTGACGGTCCTCTCCCTGATAACTCGGGTTCAGG
GCTTAGGTCTGAACAGGCAACGAAGCAGCCGCAGACACTGCCTTAGTTAGACACAGGGCCACGT
GACCGGCACAGTCTCACTCCCTTGTCCCTGAACAGCAATAGTGAATTCCCTGCCTAAGCTGGGA
TTTCCTCCACATAGAATAGCGACTGCCTCTGGATGTGGCTAGCTAGGCTTGTGTGGAACCAGAG
CATGACTTGTGGGCAGCAAGCCCCTCGCATGGCTGGTGGCTCAGCTCTCTGTGTTCAGGCCAAT
AAACATTGAGTAGAGAACCTC

hide sequence

RefSeq Acc Id:

XM_006247844 ⟹ XP_006247906

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,508,018 - 102,530,229 (-)	NCBI
mRatBN7.2	10	102,009,362 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,748,858 - 105,772,037 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

TGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCGC
GATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCTG
TTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGGG
ACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGGG
ACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCAG
GATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCAG
CCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCAA
AGAAGAACTGGAGGAGGAACAGAGGATTGAGCTGACCTCTGACCTCACCTCCCTGTAGAGGGTC
CCCTAGCCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGGCCCAGCTGGAGGGGGCATCCCCT
GACCACACCTCTGTGCTACGTCTGATGCTGGGGCTTGCAGAGGCTGCTCAGGCTGGCTTCGCCC
TCCTGTCTCTGGGTTCTGGAGAGAAGATAGCTACGAGACAGAACTGGACCCAGCCGAATTTGGG
GGAGCGGCCCTAGAACCTGTCCCCTGAGAAATAGCACGAGTGCAGAGCTGGTGAGATGGCTCAG
CAAATAAAAGTGCTTGCTGCCAAACCCTGCTGCCTGCCGACCTGAGTCCGATCCTCAAACTAGT
TCGATAAATAGGGAGAGCCCAGTGGTATGAATTGTCCCCCGAGTTCCACAGGCACACATCCACA
ACATACATACTCTTGAATCCGCGCAAAACGAATAAAATGTAATAATTAATAATAGTAATAATAA
TACCCATTCATGTTACCACCAAACTAATGAATTACCCTCTCCAGCTGGCGGGGTGCCTGTCTGA
CTTGCTGACTTGTCCCTACCAGACTGCCTCCTTCTGTTTCTAGGCTTAGATAAACAGGGAAGCA
CCCTGTTAGCAGGTGAACAGTGCAGCATCCCCTCACTTTCAGTCATTAGCTGGGCCGCCACAGC
TGCGCCTAGAACCCAGCTCTTCAGCGGGCTCCCTGCTTCCCCCCACCCCCGGGGTTGATCACAC
AGTCCTTAGGGAGTGGCACTTAGGAAGCTGGATGTCCCCAATGGGTTCTCCTACAGTCTCAGTT
GAGACTTTCTGCCCCTGGATCTGCTCAGACAAAACTCCTGTCCAGGGCCTGGGAAGAGAGAAAG
CAGTGACCGCTTAAGTCTTGGCCGCTCTGCACACTAACCTTTTTGAATTCCCTCTGGGTGAACA
TGCACACTCCTCCTCCCCTGCTCCCCACATCGGCTCTGTCCCTGCCGCTCTCCAATGCTTCTTT
CCAAGGCTTCTATGGCGGGTGCCACCTCCCTCGTTGTGGATCGTTGGCTAGCGGGCTCTTGCTC
TCCCGGGCAGAGAAACCCGGCTGGCTTTGCTTCTTAGCAGGATATTCTACCTGCTTGTACACTA
ACTAAGCTGGTGCTGACAGGACAGGACAGGCCCCTCACAATTGTGGCTGACCTGCTGTAGGGCT
GTTATCTTTTCGATCATGGAAATAAACTGGACCCAAGAAGAGGGTTTCCTATGGCCTATTAGGG
CAGTTAGGGAGGTGGAAACCCCACAGGGCTGAAAGTATGCACTGACTCCGGCGTCCAGCAGAGG
GCGCCAAAGGCACACAATCAGACCTCTGGCCCTCAGAGAGCTTCTGGGGGAATCTGCAGGGTTA
GGTCCAGAGCCCTCGCGGCAGACTAAGACCCAGGCAGCAGGAAGCAGAAATTATCTAAGGCAAT
AGGAATGCGTCGGT

hide sequence

RefSeq Acc Id:

XM_006247845 ⟹ XP_006247907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,503,327 - 102,530,229 (-)	NCBI
mRatBN7.2	10	102,004,614 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,745,302 - 105,772,037 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

TGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCGC
GATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCTG
TTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGGG
ACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGGG
ACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCAG
GATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCAG
CCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCAA
AGAAGAACTGGAGGAGGAACAGAGGATTGAGCTGACCTCTGACCTCACCTCCCTGTAGAGGGTC
CCCTAGCCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGAGTTCAGAAAGAACAGCTGACTGC
CATCCTTAAACTCATGAAGGACAACAAGGACACCTTTGGCGAGATGTCGGATGGGGACATGCAG
G

hide sequence

RefSeq Acc Id:

XM_006247846 ⟹ XP_006247908

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,505,493 - 102,530,228 (-)	NCBI
mRatBN7.2	10	102,006,678 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,747,317 - 105,772,038 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

GTGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCG
CGATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCT
GTTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGG
GACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGG
GACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCA
GGATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCA
GCCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCA
AAGAAGAACTGGAGGAGGAACAGAGAACCGAAGAATAAAGAAGGTGTCCCTTAGCCTCCTCCTG
AAGGCTTTCTTTCCTTTTGACATCCTAAAAGCTTGAGAGAGTTAAAAAAAAAAAGCCCCCCTCC
CTCAGGGAGGAGCCAATGCAGCCTGGGGTGGGGGAGGGTTGCACATTGACCAGCCCCTCCTTGG
GCTCCCCTGGACTAGCAAGATCCTGGGAATGGCCTTGTCTCTGTCCTTCTCAGAGGTGTTTATG
AGGGGGAAGCTTGCCAACAGTATAGGCTCTGGCTTTTACCAGCCATGTTTGCTCCCCACACAAC
CTTCGAGCCCCACCCCACCCCACCCAACACCCCGTTCCCACAATCCCTCTATGCTTTTGTCCTC
ACTGAAGCCAAACCACCAGGTTTGAGAAGTAACAGACAAAGGAAGTGAAGCCCACTGGTGCTCA
CTTGTGGTCAAGGGTGGTCACCCAGAGATGGTCACCCATACCCACACACATACACCGGGCAGGG
GCTCTTTCCGCTCTGGCCGGAATGATTGATACCAGGTATTAGCTTTAATATGGTTTCCCTTTAC
TCCCACCCACACCCCGGGAGTCCAGGGCTCTCAGTACTAAGAAGCCTTTTTCACTAGTGTTCTT
ATCGCCTCAGCCTAGTCTCCACTTTTGCTCGCAGAAGCAGGAACAGTGCTAGCTTCCAGCAGAC
TGCTGGATTGTGCATTTTCTAAGGCTTTTTTCCTAGCTGACTCAGAACCCCCAGCAGATAATCA
CCCACAGGTCCCAGGTTAGCTTTTCTAGAATTTTATATTTGACAGTATTTATACCAGACGACTT
GGAAGTCGCAGACGTGTTGGCGAAAACATTTTGTGTGTATGTGTGTGTGTGTTTTTTTTTCCTA
AAGCACTAGGTTTTTAGAAGACTTCCCATTTAATGGGAGCCTGGAAAATGTCCAACATCGGCTG
CTTAGCTGAGTATTCCTGACGGTCCTCTCCCTGATAACTCGGGTTCAGGGCTTAGGTCTGAACA
GGCAACGAAGCAGCCGCAGACACTGCCTTAGTTAGACACAGGGCCACGTGACCGGCACAGTCTC
ACTCCCTTGTCCCTGAACAGCAATAGTGAATTCCCTGCCTAAGCTGGGATTTCCTCCACATAGA
ATAGCGACTGCCTCTGGATGTGGCTAGCTAGGCTTGTGTGGAACCAGAGCATGACTTGTGGGCA
GCAAGCCCCTCGCATGGCTGGTGGCTCAGCTCTCTGTGTTCAGGCCAATAAACATTGAGTAGAG
AACCTC

hide sequence

RefSeq Acc Id:

XR_001840338

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,508,018 - 102,530,229 (-)	NCBI
mRatBN7.2	10	102,009,362 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,748,858 - 105,772,037 (-)	NCBI

Sequence:

show sequence

TGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCGC
GATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCTG
TTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGGG
ACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGGG
ACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCAG
GATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCAG
CCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCAA
AGAAGAACTGGAGGAGGAACAGAGGATTGAGCTGACCTCTGACCTCACCTCCCTGTAGAGGGTC
CCCTAGCCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGGCCCAGCTGGAGGGGG
CATCCCCTGACCACACCTCTGTGCTACGTCTGATGCTGGGGCTTGCAGAGGCTGCTCAGGCTGG
CTTCGCCCTCCTGTCTCTGGGTTCTGGAGAGAAGATAGCTACGAGACAGAACTGGACCCAGCCG
AATTTGGGGGAGCGGCCCTAGAACCTGTCCCCTGAGAAATAGCACGAGTGCAGAGCTGGTGAGA
TGGCTCAGCAAATAAAAGTGCTTGCTGCCAAACCCTGCTGCCTGCCGACCTGAGTCCGATCCTC
AAACTAGTTCGATAAATAGGGAGAGCCCAGTGGTATGAATTGTCCCCCGAGTTCCACAGGCACA
CATCCACAACATACATACTCTTGAATCCGCGCAAAACGAATAAAATGTAATAATTAATAATAGT
AATAATAATACCCATTCATGTTACCACCAAACTAATGAATTACCCTCTCCAGCTGGCGGGGTGC
CTGTCTGACTTGCTGACTTGTCCCTACCAGACTGCCTCCTTCTGTTTCTAGGCTTAGATAAACA
GGGAAGCACCCTGTTAGCAGGTGAACAGTGCAGCATCCCCTCACTTTCAGTCATTAGCTGGGCC
GCCACAGCTGCGCCTAGAACCCAGCTCTTCAGCGGGCTCCCTGCTTCCCCCCACCCCCGGGGTT
GATCACACAGTCCTTAGGGAGTGGCACTTAGGAAGCTGGATGTCCCCAATGGGTTCTCCTACAG
TCTCAGTTGAGACTTTCTGCCCCTGGATCTGCTCAGACAAAACTCCTGTCCAGGGCCTGGGAAG
AGAGAAAGCAGTGACCGCTTAAGTCTTGGCCGCTCTGCACACTAACCTTTTTGAATTCCCTCTG
GGTGAACATGCACACTCCTCCTCCCCTGCTCCCCACATCGGCTCTGTCCCTGCCGCTCTCCAAT
GCTTCTTTCCAAGGCTTCTATGGCGGGTGCCACCTCCCTCGTTGTGGATCGTTGGCTAGCGGGC
TCTTGCTCTCCCGGGCAGAGAAACCCGGCTGGCTTTGCTTCTTAGCAGGATATTCTACCTGCTT
GTACACTAACTAAGCTGGTGCTGACAGGACAGGACAGGCCCCTCACAATTGTGGCTGACCTGCT
GTAGGGCTGTTATCTTTTCGATCATGGAAATAAACTGGACCCAAGAAGAGGGTTTCCTATGGCC
TATTAGGGCAGTTAGGGAGGTGGAAACCCCACAGGGCTGAAAGTATGCACTGACTCCGGCGTCC
AGCAGAGGGCGCCAAAGGCACACAATCAGACCTCTGGCCCTCAGAGAGCTTCTGGGGGAATCTG
CAGGGTTAGGTCCAGAGCCCTCGCGGCAGACTAAGACCCAGGCAGCAGGAAGCAGAAATTATCT
AAGGCAATAGGAATGCGTCGGT

hide sequence

RefSeq Acc Id:

XR_358018

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	102,506,720 - 102,530,229 (-)	NCBI
mRatBN7.2	10	102,006,678 - 102,031,427 (-)	NCBI
Rnor_6.0	10	105,747,317 - 105,772,037 (-)	NCBI
Rnor_5.0	10	105,404,813 - 105,430,583 (-)	NCBI

Sequence:

show sequence

TGGCGGCGGGGCGCGGCGTGCTCCCTCGGGGTCCCGGCTGGCCGACACTCGGCGGCCACGGCGC
GATGGAGTCGCCGCTCGAACTGCTGGCCGCGCTACCCGCGCTGATCACGGCGCTGGCGCTGCTG
TTCGCCTGGCTGCTGCTGCGGCGTGGGGCGGCCAGGGCTCCGGAGAGCACTACCCGGGCCGGGG
ACCCCGGGGCTCCCGCGCCGCCTGAGCCTCCCGAGCCCTGCGCCCTGGAGCCCCCATCCGTGGG
ACCGTGCCAGTTCGAGCGCCTGGCGGAGCCGGAGGAGGAGGAGCCAGAGGCCGAGGGGAGGCAG
GATGAAGACTCAGACAGCGAGATGGGACCACCCACTGAAGAACCTGAGGAAGAAGCCGGAGCAG
CCTTCTCCTTTAAGTACAGCCCTGGGCAGCTGAGGGGAAGCCAGTACAAGAAGATGATGACCAA
AGAAGAACTGGAGGAGGAACAGAGGATTGAGCTGACCTCTGACCTCACCTCCCTGTAGAGGGTC
CCCTAGCCCCGGGCCACAAATGTTCTTGCAAACCCTTGTGGTAAGGAGAACCGAAGAATAAAGA
AGGTGTCCCTTAGCCTCCTCCTGAAGGCTTTCTTTCCTTTTGACATCCTAAAAGCTTGAGAGAG
TTAAAAAAAAAAAGCCCCCCTCCCTCAGGGAGGAGCCAATGCAGCCTGGGGTGGGGGAGGGTTG
CACATTGACCAGCCCCTCCTTGGGCTCCCCTGGACTAGCAAGATCCTGGGAATGGCCTTGTCTC
TGTCCTTCTCAGAGGTGTTTATGAGGGGGAAGCTTGCCAACAGTATAGGCTCTGGCTTTTACCA
GCCATGTTTGCTCCCCACACAACCTTCGAGCCCCACCCCACCCCACCCAACACCCCGTTCCCAC
AATCCCTCTATGCTTTTGTCCTCACTGAAGCCAAACCACCAGGTTTGAGAAGTAACAGACAAAG
GAAGTGAAGCCCACTGGTGCTCACTTGTGGTCAAGGGTGGTCACCCAGAGATGGTCACCCATAC
CCACACACATACACCGGGCAGGGGCTCTTTCCGCTCTGGCCGGAATGATTGATACCAGGTATTA
GCTTTAATATGGTTTCCCTTTACTCCCACCCACACCCCGGGAGTCCAGGGCTCTCAGTACTAAG
AAGCCTTTTTCACTAGTGTTCTTATCGCCTCAGCCTAGTCTCCACTTTTGCTCGCAGAAGCAGG
AACAGTGCTAGCTTCCAGCAGACTGCTGGATTGTGCATTTTCTAAGGCTTTTTTCCTAGCTGAC
TCAGAACCCCCAGCAGATAATCACCCACAGGTCCCAGGTTAGCTTTTCTAGAATTTTATATTTG
ACAGTATTTATACCAGACGACTTGGAAGTCGCAGACGTGTTGGCGAAAACATTTTGTGTGTATG
TGTGTGTGTGTTTTTTTTTCCTAAAGCACTAGGTTTTTAGAAGACTTCCCATTTAATGGGAGCC
TGGAAAATGTCCAACATCGGCTGCTTAGCTGAGTATTCCTGACGGTCCTCTCCCTGATAACTCG
GGTTCAGGGCTTAGGTCTGAACAGGCAACGAAGCAGCCGCAGACACTGCCTTAGTTAGACACAG
GGCCACGTGACCGGCACAGTCTCACTCCCTTGTCCCTGAACAGCAATAGTGAATTCCCTGCCTA
AGCTGGGATTTCCTCCACATAGAATAGCGACTGCCTCTGGATGTGGCTAGCTAGGCTTGTGTGG
AACCAGAGCATGACTTGTGGGCAGCAAGCCCCTCGCATGGCTGGTGGCTCAGCTCTCTGTGTTC
AGGCCAATAAACATTGAGTAGAGAACCTC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001385904	(Get FASTA)	NCBI Sequence Viewer
	XP_006247904	(Get FASTA)	NCBI Sequence Viewer
	XP_006247905	(Get FASTA)	NCBI Sequence Viewer
	XP_006247906	(Get FASTA)	NCBI Sequence Viewer
	XP_006247907	(Get FASTA)	NCBI Sequence Viewer
	XP_006247908	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059857
	ENSRNOP00000059857.2
	ENSRNOP00000066378.3
	ENSRNOP00000084815
	ENSRNOP00000084815.1
	ENSRNOP00000112085.1

RefSeq Acc Id:	XP_006247907 ⟸ XM_006247845
- Peptide Label:	isoform X2
- UniProtKB:	F1M1U0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESPLELLAALPALITALALLFAWLLLRRGAARAPESTTRAGDPGAPAPPEPPEPCALEPPSVG PCQFERLAEPEEEEPEAEGRQDEDSDSEMGPPTEEPEEEAGAAFSFKYSPGQLRGSQYKKMMTK EELEEEQRIELTSDLTSL hide sequence

RefSeq Acc Id:	XP_006247908 ⟸ XM_006247846
- Peptide Label:	isoform X3
- Sequence:	show sequence MESPLELLAALPALITALALLFAWLLLRRGAARAPESTTRAGDPGAPAPPEPPEPCALEPPSVG PCQFERLAEPEEEEPEAEGRQDEDSDSEMGPPTEEPEEEAGAAFSFKYSPGQLRGSQYKKMMTK EELEEEQRTEE hide sequence

RefSeq Acc Id:	XP_006247905 ⟸ XM_006247843
- Peptide Label:	isoform X2
- UniProtKB:	F1M1U0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESPLELLAALPALITALALLFAWLLLRRGAARAPESTTRAGDPGAPAPPEPPEPCALEPPSVG PCQFERLAEPEEEEPEAEGRQDEDSDSEMGPPTEEPEEEAGAAFSFKYSPGQLRGSQYKKMMTK EELEEEQRIELTSDLTSL hide sequence

RefSeq Acc Id:	XP_006247904 ⟸ XM_006247842
- Peptide Label:	isoform X1
- Sequence:	show sequence MESPLELLAALPALITALALLFAWLLLRRGAARAPESTTRAGDPGAPAPPEPPEPCALEPPSVG PCQFERLAEPEEEEPEAEGRQDEDSDSEMGPPTEEPEEEAGAAFSFKYSPGQLRGSQYKKMMTK EELEEEQRPSWRGHPLTTPLCYV hide sequence

RefSeq Acc Id:	XP_006247906 ⟸ XM_006247844
- Peptide Label:	isoform X2
- UniProtKB:	F1M1U0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MESPLELLAALPALITALALLFAWLLLRRGAARAPESTTRAGDPGAPAPPEPPEPCALEPPSVG PCQFERLAEPEEEEPEAEGRQDEDSDSEMGPPTEEPEEEAGAAFSFKYSPGQLRGSQYKKMMTK EELEEEQRIELTSDLTSL hide sequence

Ensembl Acc Id:

ENSRNOP00000059857 ⟸ ENSRNOT00000066137

Ensembl Acc Id:

ENSRNOP00000066378 ⟸ ENSRNOT00000074286

Ensembl Acc Id:

ENSRNOP00000084815 ⟸ ENSRNOT00000118072

RefSeq Acc Id:	NP_001385904 ⟸ NM_001398975
- UniProtKB:	A0A8I6GB26 (UniProtKB/TrEMBL), A6HKY9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000112085 ⟸ ENSRNOT00000160162

Protein Domains

Matrix-remodeling-associated protein 7 helical

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RA39-F1-model_v2	AlphaFold	M0RA39	1-173	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697945

Promoter ID:

EPDNEW_R8448

Type:

initiation region

Name:

Mxra7_1

Description:

matrix remodeling associated 7

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	105,771,991 - 105,772,051	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1594666	AgrOrtholog
BioCyc Gene	G2FUF-22582	BioCyc
Ensembl Genes	ENSRNOG00000042915	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000066137	ENTREZGENE
	ENSRNOT00000066137.4	UniProtKB/TrEMBL
	ENSRNOT00000074286.5	UniProtKB/TrEMBL
	ENSRNOT00000118072	ENTREZGENE
	ENSRNOT00000118072.2	UniProtKB/TrEMBL
	ENSRNOT00000160162.1	UniProtKB/TrEMBL
InterPro	Mxra7	UniProtKB/TrEMBL
	MXRA7_helical	UniProtKB/TrEMBL
NCBI Gene	690599	ENTREZGENE
PANTHER	MATRIX-REMODELING-ASSOCIATED PROTEIN 7	UniProtKB/TrEMBL
	PTHR21845	UniProtKB/TrEMBL
Pfam	MXRA7_helical	UniProtKB/TrEMBL
PhenoGen	Mxra7	PhenoGen
RatGTEx	ENSRNOG00000042915	RatGTEx
UniProt	A0A8I6GB26	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M2I8_RAT	UniProtKB/TrEMBL
	A6HKY9	ENTREZGENE, UniProtKB/TrEMBL
	F1M1U0	ENTREZGENE, UniProtKB/TrEMBL
	M0RA39_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-05-18	Mxra7	matrix remodeling associated 7	Mxra7	matrix-remodelling associated 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-05-24	Mxra7	matrix-remodelling associated 7	LOC688275	similar to Transmembrane anchor protein 1	Data merged from RGD:1591151	1643240	APPROVED
2008-03-06	Mxra7	matrix-remodelling associated 7	LOC690599	similar to Transmembrane anchor protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC690599	similar to Transmembrane anchor protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC688275	similar to Transmembrane anchor protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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