Ttc28 (tetratricopeptide repeat domain 28) - Rat Genome Database

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Gene: Ttc28 (tetratricopeptide repeat domain 28) Rattus norvegicus
Analyze
Symbol: Ttc28
Name: tetratricopeptide repeat domain 28
RGD ID: 1594541
Description: Predicted to enable kinase binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to be located in midbody. Orthologous to human TTC28 (tetratricopeptide repeat domain 28); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bis(2-chloroethyl) sulfide.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC304558; similar to TPR repeat-containing protein KIAA1043; tetratricopeptide repeat protein 28
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,002,816 - 51,443,461 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,005,089 - 51,443,531 (-)EnsemblGRCr8
mRatBN7.21245,342,986 - 45,783,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,345,399 - 45,783,547 (-)EnsemblmRatBN7.2
Rnor_6.01251,385,808 - 51,840,710 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,385,763 - 51,702,730 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,127,157 - 53,578,638 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,479,987 - 45,927,996 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1246,908,661 - 47,343,197 (-)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clothianidin  (ISO)
coumarin  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
glyphosate  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
O-methyleugenol  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
p-toluidine  (EXP)
paracetamol  (ISO)
PCB138  (ISO)
permethrin  (EXP)
potassium chromate  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sunitinib  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (IEA)
midbody  (IEA,ISO)
spindle pole  (IEA)

Molecular Function
kinase binding  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23036704  


Genomics

Comparative Map Data
Ttc28
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,002,816 - 51,443,461 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,005,089 - 51,443,531 (-)EnsemblGRCr8
mRatBN7.21245,342,986 - 45,783,968 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1245,345,399 - 45,783,547 (-)EnsemblmRatBN7.2
Rnor_6.01251,385,808 - 51,840,710 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1251,385,763 - 51,702,730 (-)Ensemblrn6Rnor6.0
Rnor_5.01253,127,157 - 53,578,638 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41245,479,987 - 45,927,996 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1246,908,661 - 47,343,197 (-)NCBICelera
Cytogenetic Map12q16NCBI
TTC28
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382227,978,014 - 28,679,840 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2227,978,014 - 28,679,840 (-)Ensemblhg38GRCh38
GRCh372228,374,002 - 29,075,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362226,704,002 - 27,405,853 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2212,173,962 - 12,875,814 (-)NCBICelera
Cytogenetic Map22q12.1NCBI
HuRef2211,338,617 - 12,040,439 (-)NCBIHuRef
CHM1_12228,333,275 - 29,034,916 (-)NCBICHM1_1
T2T-CHM13v2.02228,439,435 - 29,141,276 (-)NCBIT2T-CHM13v2.0
Ttc28
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395111,027,652 - 111,437,646 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5111,027,669 - 111,437,646 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385110,879,785 - 111,289,780 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,879,803 - 111,289,780 (+)Ensemblmm10GRCm38
MGSCv375111,308,822 - 111,718,799 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365111,464,223 - 111,527,433 (+)NCBIMGSCv36mm8
Celera5108,012,516 - 108,409,441 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.74NCBI
Ttc28
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554552,325,010 - 2,747,519 (-)Ensembl
ChiLan1.0NW_0049554552,322,290 - 2,964,259 (-)NCBIChiLan1.0ChiLan1.0
TTC28
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22337,974,170 - 38,678,278 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12240,673,158 - 41,377,335 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0229,030,021 - 9,749,142 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12226,749,171 - 27,407,650 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2226,753,335 - 26,941,509 (-)EnsemblpanPan2panpan1.1
TTC28
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12621,424,249 - 22,049,579 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2621,427,961 - 22,240,624 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2621,296,028 - 21,921,221 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02621,791,433 - 22,422,646 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2621,794,896 - 22,422,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12621,508,751 - 22,133,080 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02621,763,432 - 22,396,706 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02621,833,583 - 22,458,996 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ttc28
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118113,069,819 - 113,661,198 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366572,212,808 - 2,308,742 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366572,209,509 - 2,800,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC28
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1445,320,600 - 45,925,098 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11445,317,793 - 45,925,026 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21448,211,174 - 48,377,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TTC28
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11910,883,566 - 11,559,332 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1910,887,702 - 11,334,237 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045115,116,542 - 115,236,796 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ttc28
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247474,312,204 - 4,477,492 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247474,308,288 - 5,029,860 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ttc28
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11642,686,629 - 43,093,645 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:112
Count of miRNA genes:100
Interacting mature miRNAs:108
Transcripts:ENSRNOT00000046920
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121618743851213550Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
1300162Bp188Blood pressure QTL 1883.19arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)123776414551558799Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1300175Cm5Cardiac mass QTL 53.78heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)123370043251558799Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
D12Got100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,707,368 - 45,707,613 (+)MAPPERmRatBN7.2
Rnor_6.01251,764,123 - 51,764,367NCBIRnor6.0
Rnor_5.01253,502,433 - 53,502,677UniSTSRnor5.0
RGSC_v3.41245,851,925 - 45,852,170RGDRGSC3.4
RGSC_v3.41245,851,926 - 45,852,170UniSTSRGSC3.4
Celera1247,267,102 - 47,267,346UniSTS
RGSC_v3.11245,715,746 - 45,715,990RGD
RH 3.4 Map12822.42UniSTS
RH 3.4 Map12822.42RGD
Cytogenetic Map12q16UniSTS
RH129191  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,342,989 - 45,343,196 (+)MAPPERmRatBN7.2
Rnor_6.01251,385,812 - 51,386,018NCBIRnor6.0
Rnor_5.01253,127,161 - 53,127,367UniSTSRnor5.0
RGSC_v3.41245,479,991 - 45,480,197UniSTSRGSC3.4
Celera1246,908,665 - 46,908,871UniSTS
RH 3.4 Map12807.8UniSTS
Cytogenetic Map12q16UniSTS
RH142677  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,510,221 - 45,510,406 (+)MAPPERmRatBN7.2
Rnor_6.01251,551,282 - 51,551,466NCBIRnor6.0
Rnor_5.01253,291,126 - 53,291,310UniSTSRnor5.0
RGSC_v3.41245,647,074 - 45,647,258UniSTSRGSC3.4
Celera1247,073,810 - 47,073,994UniSTS
RH 3.4 Map12784.9UniSTS
Cytogenetic Map12q16UniSTS
RH144629  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,551,881 - 45,552,079 (+)MAPPERmRatBN7.2
Rnor_6.01251,592,531 - 51,592,728NCBIRnor6.0
Rnor_5.01253,332,121 - 53,332,318UniSTSRnor5.0
RGSC_v3.41245,691,417 - 45,691,614UniSTSRGSC3.4
Celera1247,114,301 - 47,114,498UniSTS
RH 3.4 Map12782.91UniSTS
Cytogenetic Map12q16UniSTS
BI297100  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21245,361,115 - 45,361,497 (+)MAPPERmRatBN7.2
mRatBN7.21245,361,344 - 45,361,497 (+)MAPPERmRatBN7.2
Rnor_6.01251,404,228 - 51,404,380NCBIRnor6.0
Rnor_6.01251,403,898 - 51,404,380NCBIRnor6.0
Rnor_5.01253,145,247 - 53,145,729UniSTSRnor5.0
Rnor_5.01253,145,577 - 53,145,729UniSTSRnor5.0
RGSC_v3.41245,498,475 - 45,498,627UniSTSRGSC3.4
Celera1246,927,059 - 46,927,211UniSTS
RH 3.4 Map12803.2UniSTS
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 163 91 90 59 92 59 6 356 192 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000046920   ⟹   ENSRNOP00000044499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,317,915 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,658,092 (-)Ensembl
Rnor_6.0 Ensembl1251,385,763 - 51,702,730 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096108   ⟹   ENSRNOP00000076352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,443,340 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,783,547 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097048   ⟹   ENSRNOP00000081388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,443,531 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,783,547 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099368   ⟹   ENSRNOP00000094394
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,429,263 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,769,468 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000104265   ⟹   ENSRNOP00000097208
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,212,130 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,552,319 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000112932   ⟹   ENSRNOP00000081684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,443,435 (-)Ensembl
mRatBN7.2 Ensembl1245,345,399 - 45,783,547 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000124936   ⟹   ENSRNOP00000104010
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,429,059 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000141591   ⟹   ENSRNOP00000107035
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,005,089 - 51,317,907 (-)Ensembl
RefSeq Acc Id: XM_006249584   ⟹   XP_006249646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,002,816 - 51,443,461 (-)NCBI
mRatBN7.21245,342,986 - 45,783,968 (-)NCBI
Rnor_6.01251,385,808 - 51,840,710 (-)NCBI
Rnor_5.01253,127,157 - 53,578,638 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006249585   ⟹   XP_006249647
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,002,816 - 51,324,080 (-)NCBI
mRatBN7.21245,342,986 - 45,659,283 (-)NCBI
Rnor_6.01251,385,808 - 51,703,904 (-)NCBI
Rnor_5.01253,127,157 - 53,578,638 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039090202   ⟹   XP_038946130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,002,816 - 51,324,080 (-)NCBI
mRatBN7.21245,342,986 - 45,659,283 (-)NCBI
RefSeq Acc Id: XM_063271796   ⟹   XP_063127866
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,002,816 - 51,443,461 (-)NCBI
RefSeq Acc Id: XM_063271797   ⟹   XP_063127867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,002,816 - 51,443,461 (-)NCBI
RefSeq Acc Id: XP_006249646   ⟸   XM_006249584
- Peptide Label: isoform X1
- UniProtKB: A0A8I5YBH2 (UniProtKB/TrEMBL),   A0A8I6ASI5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249647   ⟸   XM_006249585
- Peptide Label: isoform X4
- UniProtKB: D3ZXP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000044499   ⟸   ENSRNOT00000046920
RefSeq Acc Id: XP_038946130   ⟸   XM_039090202
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000081684   ⟸   ENSRNOT00000112932
Ensembl Acc Id: ENSRNOP00000097208   ⟸   ENSRNOT00000104265
Ensembl Acc Id: ENSRNOP00000076352   ⟸   ENSRNOT00000096108
Ensembl Acc Id: ENSRNOP00000081388   ⟸   ENSRNOT00000097048
Ensembl Acc Id: ENSRNOP00000094394   ⟸   ENSRNOT00000099368
RefSeq Acc Id: XP_063127867   ⟸   XM_063271797
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ASI5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127866   ⟸   XM_063271796
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZRJ0 (UniProtKB/TrEMBL),   D3ZXP1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000104010   ⟸   ENSRNOT00000124936
Ensembl Acc Id: ENSRNOP00000107035   ⟸   ENSRNOT00000141591
Protein Domains
CHAT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZXP1-F1-model_v2 AlphaFold D3ZXP1 1-2339 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594541 AgrOrtholog
BioCyc Gene G2FUF-18836 BioCyc
Ensembl Genes ENSRNOG00000032590 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046920 ENTREZGENE
  ENSRNOT00000046920.7 UniProtKB/TrEMBL
  ENSRNOT00000096108 ENTREZGENE
  ENSRNOT00000096108.2 UniProtKB/TrEMBL
  ENSRNOT00000097048 ENTREZGENE
  ENSRNOT00000097048.2 UniProtKB/TrEMBL
  ENSRNOT00000099368.2 UniProtKB/TrEMBL
  ENSRNOT00000104265.2 UniProtKB/TrEMBL
  ENSRNOT00000112932 ENTREZGENE
  ENSRNOT00000112932.2 UniProtKB/TrEMBL
  ENSRNOT00000124936.1 UniProtKB/TrEMBL
  ENSRNOT00000141591 ENTREZGENE
  ENSRNOT00000141591.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro CHAT_dom UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report rno:304558 UniProtKB/TrEMBL
NCBI Gene 304558 ENTREZGENE
PANTHER RAPSYN-RELATED UniProtKB/TrEMBL
  TETRATRICOPEPTIDE REPEAT PROTEIN 28 UniProtKB/TrEMBL
Pfam CHAT UniProtKB/TrEMBL
  TPR_12 UniProtKB/TrEMBL
  TPR_7 UniProtKB/TrEMBL
PhenoGen Ttc28 PhenoGen
PROSITE TPR UniProtKB/TrEMBL
  TPR_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000032590 RatGTEx
SMART TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5YBH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZRJ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZTF5_RAT UniProtKB/TrEMBL
  A0A8I6AM19_RAT UniProtKB/TrEMBL
  A0A8I6ASI5 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LKH7_RAT UniProtKB/TrEMBL
  A0ABK0LPY5_RAT UniProtKB/TrEMBL
  D3ZXP1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-17 Ttc28  tetratricopeptide repeat domain 28  LOC304558  similar to TPR repeat-containing protein KIAA1043  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC304558  similar to TPR repeat-containing protein KIAA1043      Symbol and Name status set to provisional 70820 PROVISIONAL