Lrrtm2 (leucine rich repeat transmembrane neuronal 2) - Rat Genome Database

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Gene: Lrrtm2 (leucine rich repeat transmembrane neuronal 2) Rattus norvegicus
Analyze
Symbol: Lrrtm2
Name: leucine rich repeat transmembrane neuronal 2
RGD ID: 1593785
Description: Enables neurexin family protein binding activity. Involved in regulation of postsynaptic density assembly. Acts upstream of or within synapse organization. Located in excitatory synapse. Is active in several cellular components, including Schaffer collateral - CA1 synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Orthologous to human LRRTM2 (leucine rich repeat transmembrane neuronal 2); INTERACTS WITH 17alpha-ethynylestradiol; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: leucine-rich repeat neuronal 2 protein; leucine-rich repeat transmembrane neuronal protein 2; LOC685472; similar to leucine-rich repeat transmembrane neuronal 2 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,091,919 - 27,096,967 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1827,091,919 - 27,096,967 (-)EnsemblGRCr8
mRatBN7.21826,817,816 - 26,822,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,817,816 - 26,822,864 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1826,945,217 - 26,950,265 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,708,134 - 27,713,182 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,043,038 - 27,048,086 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,012,877 - 28,017,925 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,012,877 - 28,017,925 (-)Ensemblrn6Rnor6.0
Rnor_5.01827,722,686 - 27,727,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41827,722,717 - 27,727,765 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1826,552,974 - 26,558,022 (-)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Truncating mutations in NRXN2 and NRXN1 in autism spectrum disorders and schizophrenia. Gauthier J, etal., Hum Genet. 2011 Oct;130(4):563-73. doi: 10.1007/s00439-011-0975-z. Epub 2011 Mar 22.
3. An unbiased expression screen for synaptogenic proteins identifies the LRRTM protein family as synaptic organizers. Linhoff MW, etal., Neuron. 2009 Mar 12;61(5):734-49. doi: 10.1016/j.neuron.2009.01.017.
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21788371   PMID:23931994   PMID:24613359   PMID:27565350  


Genomics

Comparative Map Data
Lrrtm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81827,091,919 - 27,096,967 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1827,091,919 - 27,096,967 (-)EnsemblGRCr8
mRatBN7.21826,817,816 - 26,822,864 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1826,817,816 - 26,822,864 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1826,945,217 - 26,950,265 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01827,708,134 - 27,713,182 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01827,043,038 - 27,048,086 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01828,012,877 - 28,017,925 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1828,012,877 - 28,017,925 (-)Ensemblrn6Rnor6.0
Rnor_5.01827,722,686 - 27,727,734 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41827,722,717 - 27,727,765 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1826,552,974 - 26,558,022 (-)NCBICelera
Cytogenetic Map18p11NCBI
LRRTM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385138,868,921 - 138,875,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5138,868,921 - 138,875,368 (-)Ensemblhg38GRCh38
GRCh375138,204,610 - 138,211,024 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365138,232,978 - 138,238,908 (-)NCBIBuild 36Build 36hg18NCBI36
Build 345138,232,977 - 138,238,908NCBI
Celera5134,326,860 - 134,332,826 (-)NCBICelera
Cytogenetic Map5q31.2NCBI
HuRef5133,394,868 - 133,400,836 (-)NCBIHuRef
CHM1_15137,637,719 - 137,643,697 (-)NCBICHM1_1
T2T-CHM13v2.05139,395,050 - 139,401,453 (-)NCBIT2T-CHM13v2.0
Lrrtm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391835,342,056 - 35,348,077 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1835,342,056 - 35,348,077 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381835,209,003 - 35,215,024 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1835,209,003 - 35,215,024 (-)Ensemblmm10GRCm38
MGSCv371835,368,657 - 35,374,678 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361835,336,885 - 35,340,892 (-)NCBIMGSCv36mm8
Celera1835,664,662 - 35,670,684 (-)NCBICelera
Cytogenetic Map18B1NCBI
cM Map1818.94NCBI
Lrrtm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554181,636,828 - 1,643,588 (+)Ensembl
ChiLan1.0NW_0049554181,636,906 - 1,643,430 (+)NCBIChiLan1.0ChiLan1.0
LRRTM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24134,143,569 - 134,149,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15132,283,123 - 132,289,371 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05134,247,933 - 134,254,188 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15140,373,790 - 140,380,127 (-)NCBIPanPan1.1PanPan1.1panPan2
LRRTM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11126,392,642 - 26,397,018 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1126,392,734 - 26,396,223 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1125,159,555 - 25,163,871 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01127,248,202 - 27,252,518 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1127,248,255 - 27,252,533 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11125,955,564 - 25,959,881 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01125,775,869 - 25,782,210 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01126,442,410 - 26,446,727 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lrrtm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213153,637,684 - 153,641,722 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365317,967,213 - 7,974,266 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365317,968,111 - 7,973,823 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LRRTM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2140,803,626 - 140,809,493 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.12140,803,624 - 140,810,013 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22146,698,365 - 146,704,568 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LRRTM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12341,534,757 - 41,540,372 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2341,533,973 - 41,539,915 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603436,344,313 - 36,349,978 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lrrtm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474331,644,209 - 31,651,688 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474331,648,543 - 31,651,772 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Lrrtm2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1159,133,687 - 9,138,991 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lrrtm2
9 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:73
Interacting mature miRNAs:78
Transcripts:ENSRNOT00000075420
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182507112683910656Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18706572852065728Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)182201556261600538Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181564228031610627Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181221668431644508Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182682218671822186Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18706572852065728Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182349405785487725Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18706572852065728Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18706572852065728Rat
6903345Bp349Blood pressure QTL 3493.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182682218671822186Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181522610142690662Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182682218671822186Rat
6903347Bp350Blood pressure QTL 3504.4arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182682218671822186Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18546045542690191Rat
6903349Bp351Blood pressure QTL 3513.5arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
631509Sald2Serum aldosterone level QTL 22.9blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)182641582171415821Rat
6903351Bp352Blood pressure QTL 3523.3arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18391722648917226Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182682218671822186Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18131610627Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182682218671822186Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182682218671822186Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181221668431644508Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228031610627Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)18144930869Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181955353285493247Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181206648257066482Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181206648285493247Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18381190230809809Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134566578Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18448264849482648Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18154490981Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181206648285493247Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18706572852065728Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181564228086134022Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134566578Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)18430735449307354Rat

Markers in Region
BB129880  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,819,936 - 26,820,027 (+)MAPPERmRatBN7.2
Rnor_6.01828,014,998 - 28,015,088NCBIRnor6.0
Rnor_5.01827,724,807 - 27,724,897UniSTSRnor5.0
RGSC_v3.41827,724,838 - 27,724,928UniSTSRGSC3.4
Celera1826,555,095 - 26,555,185UniSTS
Cytogenetic Map18p11UniSTS
RH132461  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,817,053 - 26,817,235 (+)MAPPERmRatBN7.2
Rnor_6.01828,012,115 - 28,012,296NCBIRnor6.0
Rnor_5.01827,721,874 - 27,722,055UniSTSRnor5.0
RGSC_v3.41827,721,955 - 27,722,136UniSTSRGSC3.4
Celera1826,552,212 - 26,552,393UniSTS
RH 3.4 Map18372.8UniSTS
Cytogenetic Map18p11UniSTS
AI851755  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,817,980 - 26,818,087 (+)MAPPERmRatBN7.2
Rnor_6.01828,013,042 - 28,013,148NCBIRnor6.0
Rnor_5.01827,722,851 - 27,722,957UniSTSRnor5.0
RGSC_v3.41827,722,882 - 27,722,988UniSTSRGSC3.4
Celera1826,553,139 - 26,553,245UniSTS
Cytogenetic Map18p11UniSTS
Lrrtm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21826,821,028 - 26,821,665 (+)MAPPERmRatBN7.2
Rnor_6.01828,016,090 - 28,016,726NCBIRnor6.0
Rnor_5.01827,725,899 - 27,726,535UniSTSRnor5.0
RGSC_v3.41827,725,930 - 27,726,566UniSTSRGSC3.4
Celera1826,556,187 - 26,556,823UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 11 34 149 54 53 23 60 23 6 195 116 3 136 38 71 30 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000075420   ⟹   ENSRNOP00000067172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1827,091,919 - 27,096,967 (-)Ensembl
mRatBN7.2 Ensembl1826,817,816 - 26,822,864 (-)Ensembl
Rnor_6.0 Ensembl1828,012,877 - 28,017,925 (-)Ensembl
RefSeq Acc Id: NM_001109469   ⟹   NP_001102939
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81827,091,919 - 27,096,967 (-)NCBI
mRatBN7.21826,817,816 - 26,822,864 (-)NCBI
Rnor_6.01828,012,877 - 28,017,925 (-)NCBI
Rnor_5.01827,722,686 - 27,727,734 (-)NCBI
RGSC_v3.41827,722,717 - 27,727,765 (-)RGD
Celera1826,552,974 - 26,558,022 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102939 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D4A7P2 (Get FASTA)   NCBI Sequence Viewer  
  EDL76254 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000067172
  ENSRNOP00000067172.2
RefSeq Acc Id: NP_001102939   ⟸   NM_001109469
- Peptide Label: precursor
- UniProtKB: D4A7P2 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067172   ⟸   ENSRNOT00000075420

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7P2-F1-model_v2 AlphaFold D4A7P2 1-515 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593785 AgrOrtholog
BioCyc Gene G2FUF-7916 BioCyc
Ensembl Genes ENSRNOG00000047085 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000075420 ENTREZGENE
  ENSRNOT00000075420.3 UniProtKB/Swiss-Prot
Gene3D-CATH 3.80.10.10 UniProtKB/Swiss-Prot
InterPro Leu-rich_rpt UniProtKB/Swiss-Prot
  Leu-rich_rpt_typical-subtyp UniProtKB/Swiss-Prot
  LRFN UniProtKB/Swiss-Prot
  LRR_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:685472 UniProtKB/Swiss-Prot
NCBI Gene 685472 ENTREZGENE
PANTHER INSULIN-LIKE GROWTH FACTOR-BINDING PROTEIN COMPLEX ACID LABILE SUBUNIT ISOFORM X1 UniProtKB/Swiss-Prot
  SYNAPTIC ADHESION-LIKE MOLECULE SALM UniProtKB/Swiss-Prot
Pfam LRR_8 UniProtKB/Swiss-Prot
PhenoGen Lrrtm2 PhenoGen
PRINTS LEURICHRPT UniProtKB/Swiss-Prot
PROSITE LRR UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000047085 RatGTEx
SMART LRR_TYP UniProtKB/Swiss-Prot
Superfamily-SCOP L domain-like UniProtKB/Swiss-Prot
UniProt D4A7P2 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-07-08 Lrrtm2  leucine rich repeat transmembrane neuronal 2  LOC682156  similar to leucine-rich repeat transmembrane neuronal 2 protein  Data merged from RGD:1586931 1643240 APPROVED
2008-03-05 Lrrtm2  leucine rich repeat transmembrane neuronal 2  LOC685472  similar to leucine-rich repeat transmembrane neuronal 2 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC685472  similar to leucine-rich repeat transmembrane neuronal 2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682156  similar to leucine-rich repeat transmembrane neuronal 2 protein      Symbol and Name status set to provisional 70820 PROVISIONAL