Stard9 (StAR-related lipid transfer domain containing 9) - Rat Genome Database

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Gene: Stard9 (StAR-related lipid transfer domain containing 9) Rattus norvegicus
Analyze
Symbol: Stard9
Name: StAR-related lipid transfer domain containing 9
RGD ID: 1593360
Description: Predicted to enable microtubule binding activity and microtubule motor activity. Predicted to be involved in spindle assembly. Predicted to be located in cytoskeleton. Predicted to be active in centriole; cytoplasm; and nucleus. Orthologous to human STARD9 (StAR related lipid transfer domain containing 9); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acrylamide; azoxystrobin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC691920; RGD1310448; similar to kinesin-like motor protein C20orf23; StAR-related lipid transfer (START) domain containing 9; stAR-related lipid transfer protein 9; START domain containing 9-like; uncharacterized protein LOC691920
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,034,866 - 128,150,493 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)EnsemblGRCr8
mRatBN7.23107,581,097 - 107,672,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,581,164 - 107,673,898 (+)EnsemblmRatBN7.2
Rnor_6.03112,428,361 - 112,659,558 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,428,395 - 112,659,140 (+)Ensemblrn6Rnor6.0
Rnor_5.03118,973,922 - 119,052,775 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.03119,200,597 - 119,203,279 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43107,401,960 - 107,492,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3106,486,870 - 106,577,463 (+)NCBICelera
Cytogenetic Map3q35NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centriole  (IBA,IEA,ISO)
cytoplasm  (IBA,IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22153075  


Genomics

Comparative Map Data
Stard9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83128,034,866 - 128,150,493 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)EnsemblGRCr8
mRatBN7.23107,581,097 - 107,672,746 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3107,581,164 - 107,673,898 (+)EnsemblmRatBN7.2
Rnor_6.03112,428,361 - 112,659,558 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3112,428,395 - 112,659,140 (+)Ensemblrn6Rnor6.0
Rnor_5.03118,973,922 - 119,052,775 (+)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.03119,200,597 - 119,203,279 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43107,401,960 - 107,492,695 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3106,486,870 - 106,577,463 (+)NCBICelera
Cytogenetic Map3q35NCBI
STARD9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381542,575,606 - 42,720,998 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1542,575,606 - 42,720,998 (+)Ensemblhg38GRCh38
GRCh371542,867,804 - 43,013,196 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361540,744,722 - 40,800,488 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341540,769,707 - 40,800,347NCBI
Celera1519,635,565 - 19,780,951 (+)NCBICelera
Cytogenetic Map15q15.2NCBI
HuRef1519,716,325 - 19,861,782 (+)NCBIHuRef
CHM1_11542,986,298 - 43,131,570 (+)NCBICHM1_1
T2T-CHM13v2.01540,382,607 - 40,528,130 (+)NCBIT2T-CHM13v2.0
Stard9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392120,459,567 - 120,562,371 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2120,459,602 - 120,562,376 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm382120,629,086 - 120,729,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2120,629,121 - 120,731,895 (+)Ensemblmm10GRCm38
MGSCv372120,454,960 - 120,541,822 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362120,320,567 - 120,393,363 (+)NCBIMGSCv36mm8
Celera2121,783,495 - 121,869,440 (+)NCBICelera
Cytogenetic Map2E5NCBI
cM Map260.37NCBI
Stard9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554169,276,119 - 9,389,339 (+)Ensembl
ChiLan1.0NW_0049554169,276,026 - 9,393,842 (+)NCBIChiLan1.0ChiLan1.0
STARD9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21631,826,722 - 31,971,203 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11535,981,718 - 36,128,864 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01521,537,229 - 21,681,651 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11539,692,013 - 39,836,032 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1539,692,013 - 39,836,032 (+)EnsemblpanPan2panpan1.1
STARD9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1309,519,994 - 9,653,743 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl309,520,098 - 9,654,166 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha309,577,259 - 9,711,737 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0309,654,823 - 9,789,542 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.1309,574,086 - 9,708,057 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0309,680,839 - 9,815,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0309,813,363 - 9,947,976 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stard9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864087,994,807 - 88,138,972 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364715,846,822 - 5,985,631 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364715,842,887 - 5,986,988 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11128,656,375 - 128,808,951 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21143,551,485 - 143,701,252 (-)NCBISscrofa10.2Sscrofa10.2susScr3
STARD9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12640,251,337 - 40,402,700 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2640,250,832 - 40,324,816 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666048100,610,097 - 100,764,202 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248049,690,054 - 9,840,816 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Stard9
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1598,753,125 - 98,843,262 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Stard9
640 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:9
Count of miRNA genes:9
Interacting mature miRNAs:9
Transcripts:ENSRNOT00000048141
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)396509147141509147Rat
1582238Bw68Body weight QTL 683.20.0064body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582239Epfw1Epididymal fat weight QTL 14.50.0006epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)373592512136118980Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)367641776167835660Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)358601291153936591Rat
1582216Bw65Body weight QTL 656.3body mass (VT:0001259)body weight (CMO:0000012)3122654702136118980Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
1582218Bw74Body weight QTL 743.90.0021body mass (VT:0001259)body weight (CMO:0000012)373592512136118980Rat
1582219Bw63Body weight QTL 633.80.001body mass (VT:0001259)body weight (CMO:0000012)3116582412136118980Rat
1582221Kidm30Kidney mass QTL 303.50.0008kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)385062224136118980Rat
1582210Bw71Body weight QTL 713.30.0012body mass (VT:0001259)body weight (CMO:0000012)385062224136118980Rat
7387306Bw124Body weight QTL 1243.20.0003body mass (VT:0001259)body weight (CMO:0000012)3104545086149545086Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)381425008141509147Rat
724523Tsu1Thymus enlargement suppressive QTL 13.84thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)370845569136091483Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)393829559138829559Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)3112250810157250810Rat
2302273Gluco35Glucose level QTL 355.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)3101255536134750886Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)379649560177741895Rat
2292613Ept16Estrogen-induced pituitary tumorigenesis QTL 168.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)396509147141509147Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)3117537367162537367Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3125116475170116475Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3110225882155225882Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)390755164141509147Rat
5686842Rf59Renal function QTL 59urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)3122395989167395989Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)398651826167012663Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)3125814931139636791Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3110634702155634702Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358186Ept2Estrogen-induced pituitary tumorigenesis QTL 28.3pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)367641995130815812Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)3116188400161188400Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 88 59 6 352 188 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001080099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006234817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017602595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039106814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005502955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010064700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048141   ⟹   ENSRNOP00000039716
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,036,521 - 128,127,402 (+)Ensembl
mRatBN7.2 Ensembl3107,582,774 - 107,673,898 (+)Ensembl
Rnor_6.0 Ensembl3112,428,492 - 112,659,140 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079109   ⟹   ENSRNOP00000075178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)Ensembl
mRatBN7.2 Ensembl3107,581,164 - 107,673,898 (+)Ensembl
Rnor_6.0 Ensembl3112,428,395 - 112,499,838 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094825   ⟹   ENSRNOP00000093096
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)Ensembl
mRatBN7.2 Ensembl3107,626,475 - 107,673,898 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163429   ⟹   ENSRNOP00000103364
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164327   ⟹   ENSRNOP00000100287
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,034,908 - 128,127,402 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000164510   ⟹   ENSRNOP00000103189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl3128,034,908 - 128,115,418 (+)Ensembl
RefSeq Acc Id: NM_001427830   ⟹   NP_001414759
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,908 - 128,127,611 (+)NCBI
RefSeq Acc Id: XM_001080099   ⟹   XP_001080099
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,866 - 128,109,948 (+)NCBI
mRatBN7.23107,581,117 - 107,653,642 (+)NCBI
Rnor_6.03112,428,361 - 112,499,333 (+)NCBI
Rnor_5.03118,973,922 - 119,052,775 (+)NCBI
RGSC_v3.43107,401,960 - 107,492,695 (+)RGD
Sequence:
RefSeq Acc Id: XM_006234817   ⟹   XP_006234879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,085,195 - 128,125,736 (+)NCBI
mRatBN7.23107,631,463 - 107,672,746 (+)NCBI
Rnor_6.03112,477,255 - 112,659,133 (+)NCBI
Rnor_5.03118,973,922 - 119,052,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592209   ⟹   XP_017447698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,867 - 128,125,736 (+)NCBI
mRatBN7.23107,581,119 - 107,672,746 (+)NCBI
Rnor_6.03112,428,362 - 112,659,133 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017592211   ⟹   XP_017447700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,094,167 - 128,125,736 (+)NCBI
mRatBN7.23107,640,430 - 107,672,746 (+)NCBI
Rnor_6.03112,486,223 - 112,659,133 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039106809   ⟹   XP_038962737
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,867 - 128,125,545 (+)NCBI
mRatBN7.23107,581,119 - 107,672,746 (+)NCBI
RefSeq Acc Id: XM_039106810   ⟹   XP_038962738
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,867 - 128,125,545 (+)NCBI
mRatBN7.23107,581,119 - 107,672,746 (+)NCBI
RefSeq Acc Id: XM_039106814   ⟹   XP_038962742
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,093,232 - 128,125,736 (+)NCBI
mRatBN7.23107,639,111 - 107,672,746 (+)NCBI
RefSeq Acc Id: XM_063284596   ⟹   XP_063140666
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,867 - 128,124,949 (+)NCBI
RefSeq Acc Id: XR_005502955
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,867 - 128,124,175 (+)NCBI
mRatBN7.23107,581,118 - 107,670,412 (+)NCBI
RefSeq Acc Id: XR_010064698
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,869 - 128,148,913 (+)NCBI
RefSeq Acc Id: XR_010064699
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,869 - 128,150,493 (+)NCBI
RefSeq Acc Id: XR_010064700
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83128,034,869 - 128,148,913 (+)NCBI
RefSeq Acc Id: XP_001080099   ⟸   XM_001080099
- Peptide Label: isoform X4
- UniProtKB: D3Z9J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006234879   ⟸   XM_006234817
- Peptide Label: isoform X6
- UniProtKB: A0A8I6GKI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447698   ⟸   XM_017592209
- Peptide Label: isoform X1
- UniProtKB: D3Z9J4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017447700   ⟸   XM_017592211
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GKI2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075178   ⟸   ENSRNOT00000079109
Ensembl Acc Id: ENSRNOP00000039716   ⟸   ENSRNOT00000048141
RefSeq Acc Id: XP_038962738   ⟸   XM_039106810
- Peptide Label: isoform X3
- UniProtKB: D3Z9J4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962737   ⟸   XM_039106809
- Peptide Label: isoform X2
- UniProtKB: D3Z9J4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038962742   ⟸   XM_039106814
- Peptide Label: isoform X8
- UniProtKB: A0A8I6GKI2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093096   ⟸   ENSRNOT00000094825
RefSeq Acc Id: XP_063140666   ⟸   XM_063284596
- Peptide Label: isoform X5
- UniProtKB: D3Z9J4 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414759   ⟸   NM_001427830
- UniProtKB: A0A0G2K9Y3 (UniProtKB/TrEMBL),   D3Z9J4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000103189   ⟸   ENSRNOT00000164510
Ensembl Acc Id: ENSRNOP00000100287   ⟸   ENSRNOT00000164327
Ensembl Acc Id: ENSRNOP00000103364   ⟸   ENSRNOT00000163429
Protein Domains
FHA   Kinesin motor   START

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692347
Promoter ID:EPDNEW_R2870
Type:single initiation site
Name:Stard9_1
Description:StAR-related lipid transfer domain containing 9
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03112,428,389 - 112,428,449EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593360 AgrOrtholog
BioCyc Gene G2FUF-48158 BioCyc
Ensembl Genes ENSRNOG00000010050 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048141.7 UniProtKB/TrEMBL
  ENSRNOT00000079109 ENTREZGENE
  ENSRNOT00000079109.3 UniProtKB/TrEMBL
  ENSRNOT00000094825.2 UniProtKB/TrEMBL
  ENSRNOT00000163429.1 UniProtKB/TrEMBL
  ENSRNOT00000164327.1 UniProtKB/TrEMBL
  ENSRNOT00000164510 ENTREZGENE
  ENSRNOT00000164510.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.200.20 UniProtKB/TrEMBL
  3.30.530.20 UniProtKB/TrEMBL
  3.40.850.10 UniProtKB/TrEMBL
InterPro FHA_dom UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  SMAD_FHA_domain UniProtKB/TrEMBL
  START-like_dom UniProtKB/TrEMBL
  START_lipid-bd_dom UniProtKB/TrEMBL
NCBI Gene 691920 ENTREZGENE
PANTHER PTHR47117 UniProtKB/TrEMBL
  STAR-RELATED LIPID TRANSFER PROTEIN 9 UniProtKB/TrEMBL
Pfam FHA UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
PhenoGen Stard9 PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE FHA_DOMAIN UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN1 UniProtKB/TrEMBL
  KINESIN_MOTOR_DOMAIN2 UniProtKB/TrEMBL
  START UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010050 RatGTEx
SMART FHA UniProtKB/TrEMBL
  KISc UniProtKB/TrEMBL
Superfamily-SCOP Bet v1-like UniProtKB/TrEMBL
  SMAD_FHA UniProtKB/TrEMBL
  SSF52540 UniProtKB/TrEMBL
UniProt A0A0G2K9Y3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6GKI2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L2X3_RAT UniProtKB/TrEMBL
  A0ABK0LHA2_RAT UniProtKB/TrEMBL
  A0ABK0LP35_RAT UniProtKB/TrEMBL
  D3Z9J4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-12 Stard9  StAR-related lipid transfer domain containing 9  Stard9  StAR-related lipid transfer (START) domain containing 9  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-21 Stard9  StAR-related lipid transfer (START) domain containing 9  LOC691920  similar to kinesin-like motor protein C20orf23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 LOC691920  similar to kinesin-like motor protein C20orf23  LOC100363887  START domain containing 9-like  Data merged from RGD:2322169 1643240 APPROVED
2010-05-06 LOC100363887  START domain containing 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC691920  similar to kinesin-like motor protein C20orf23  LOC688021  similar to kinesin-like motor protein C20orf23  Data merged from RGD:1593641 1643240 APPROVED
2006-11-20 LOC691920  similar to kinesin-like motor protein C20orf23      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC688021  similar to kinesin-like motor protein C20orf23      Symbol and Name status set to provisional 70820 PROVISIONAL