Snrpel1 (small nuclear ribonucleoprotein polypeptide E like 1) - Rat Genome Database

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Gene: Snrpel1 (small nuclear ribonucleoprotein polypeptide E like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Snrpel1 (Ensembl: Snrpe)
Name: small nuclear ribonucleoprotein polypeptide E like 1 (Ensembl:small nuclear ribonucleoprotein polypeptide E)
RGD ID: 1592561
Description: Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC685587; similar to small nuclear ribonucleoprotein E; small nuclear ribonucleoprotein E; small nuclear ribonucleoprotein E-like; small nuclear ribonucleoprotein polypeptide E; small nuclear ribonucleoprotein polypeptide E like1; small nuclear ribonucleoprotein polypeptide E-like1; Snrpe
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Snrpe  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,294,198 - 129,294,630 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8129,294,325 - 129,294,603 (-)EnsemblGRCr8
mRatBN7.28120,416,627 - 120,417,059 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,416,603 - 120,417,059 (-)EnsemblmRatBN7.2
Rnor_6.08129,371,546 - 129,371,994 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.08128,569,148 - 128,569,577 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48125,713,248 - 125,713,526 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8119,558,007 - 119,558,455 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)8105462581132782436Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8103375781129871912Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)8102413464132782436Rat
634332Pia18Pristane induced arthritis QTL 184joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)884192326132782436Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)885348065130348065Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)879394435132782436Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)891340911131690273Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000042614   ⟹   ENSRNOP00000047775
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl8129,294,325 - 129,294,603 (-)Ensembl
mRatBN7.2 Ensembl8120,416,603 - 120,417,059 (-)Ensembl
Rnor_6.0 Ensembl8129,371,556 - 129,371,973 (-)Ensembl
RefSeq Acc Id: XM_039082730   ⟹   XP_038938658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.28120,416,620 - 120,417,066 (-)NCBI
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZSP1-F1-model_v2 AlphaFold D3ZSP1 1-92 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696395
Promoter ID:EPDNEW_R6911
Type:single initiation site
Name:Snrpe_1
Description:small nuclear ribonucleoprotein polypeptide E
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.08129,371,970 - 129,372,030EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1592561 AgrOrtholog
BioCyc Gene G2FUF-28717 BioCyc
Ensembl Genes ENSRNOG00000031127 Ensembl
NCBI Gene 685587 ENTREZGENE
PhenoGen Snrpel1 PhenoGen
RatGTEx ENSRNOG00000031127 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2025-01-27 Snrpel1  small nuclear ribonucleoprotein polypeptide E like 1  Snrpel1  small nuclear ribonucleoprotein polypeptide E like1  Name changed 629549 APPROVED
2022-05-09 Snrpel1  small nuclear ribonucleoprotein polypeptide E like1  Snrpel1  small nuclear ribonucleoprotein polypeptide E-like1  Name changed 629549 APPROVED
2012-08-08 Snrpel1  small nuclear ribonucleoprotein polypeptide E-like1  Snrpe  small nuclear ribonucleoprotein polypeptide E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-18 Snrpe  small nuclear ribonucleoprotein polypeptide E  Snrpe  small nuclear ribonucleoprotein E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Snrpe  small nuclear ribonucleoprotein E  LOC685587  similar to small nuclear ribonucleoprotein E  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685587  similar to small nuclear ribonucleoprotein E  LOC687315  similar to small nuclear ribonucleoprotein E  Data merged from RGD:1586582 1643240 APPROVED
2006-11-20 LOC685587  similar to small nuclear ribonucleoprotein E      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687315  similar to small nuclear ribonucleoprotein E      Symbol and Name status set to provisional 70820 PROVISIONAL