| Gene: Cnbd1 (cyclic nucleotide binding domain containing 1) Rattus norvegicus |
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 Analyze |
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| Symbol: |
Cnbd1 |
| Name: |
cyclic nucleotide binding domain containing 1 |
| RGD ID: |
1592300 |
| Description: |
Orthologous to human CNBD1 (cyclic nucleotide binding domain containing 1); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A. |
| Type: |
protein-coding
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| RefSeq Status: |
VALIDATED |
| Previously known as: |
cyclic nucleotide-binding domain-containing protein 1; LOC689462; similar to cyclic nucleotide binding domain containing 1 |
| RGD Orthologs |
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| Alliance Orthologs |
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| More Info |
more info ...
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| More Info |
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| Latest Assembly: |
GRCr8 - GRCr8 Assembly |
| Position: |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 5 | 37,030,954 - 37,403,996 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 5 | 37,030,362 - 37,403,752 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 5 | 32,234,003 - 32,606,765 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 32,329,368 - 32,606,705 (-) | Ensembl | | | | mRatBN7.2 | Rnor_6.0 | 5 | 32,590,282 - 32,956,176 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 32,629,466 - 32,956,159 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 37,277,816 - 37,617,935 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 5 | 33,405,417 - 33,734,508 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 5 | 31,379,704 - 31,733,488 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q13 | NCBI | | | | |
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| JBrowse: |
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References
Genomics
Comparative Map Data
Cnbd1 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 5 | 37,030,954 - 37,403,996 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 5 | 37,030,362 - 37,403,752 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 5 | 32,234,003 - 32,606,765 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 32,329,368 - 32,606,705 (-) | Ensembl | | | | mRatBN7.2 | Rnor_6.0 | 5 | 32,590,282 - 32,956,176 (-) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 32,629,466 - 32,956,159 (-) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 37,277,816 - 37,617,935 (-) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 5 | 33,405,417 - 33,734,508 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 5 | 31,379,704 - 31,733,488 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q13 | NCBI | | | | |
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CNBD1 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 86,866,415 - 87,428,652 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 86,866,415 - 87,615,219 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 8 | 87,878,643 - 88,395,087 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 8 | 87,947,792 - 88,464,071 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 8 | 84,072,949 - 84,589,687 (+) | NCBI | | Celera | | | Cytogenetic Map | 8 | q21.3 | NCBI | | | | | HuRef | 8 | 83,088,334 - 83,604,975 (+) | NCBI | | HuRef | | | CHM1_1 | 8 | 87,920,383 - 88,436,611 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 87,987,207 - 88,551,974 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Cnbd1 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 4 | 18,767,980 - 19,122,550 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 18,767,980 - 19,122,565 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 4 | 18,767,980 - 19,122,550 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 18,860,454 - 19,122,526 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 4 | 18,785,993 - 19,049,633 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 18,785,993 - 19,049,633 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 18,532,037 - 18,894,301 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | A3 | NCBI | | | | | cM Map | 4 | 7.28 | NCBI | | | | |
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Cnbd1 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955417 | 4,407,722 - 4,760,280 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955417 | 4,407,737 - 4,783,737 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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CNBD1 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 7 | 104,284,088 - 104,920,812 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 8 | 79,822,898 - 80,438,744 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 8 | 83,577,064 - 84,089,109 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 8 | 85,542,558 - 86,047,774 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 8 | 85,542,605 - 86,047,543 (+) | Ensembl | | | panPan2 | panpan1.1 |
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CNBD1 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 29 | 32,992,926 - 33,529,130 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 29 | 33,031,247 - 33,529,180 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 29 | 33,148,183 - 33,682,814 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 29 | 33,163,194 - 33,726,362 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 29 | 33,201,103 - 33,726,230 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 29 | 33,191,123 - 33,726,670 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 29 | 33,215,787 - 33,747,602 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 29 | 33,636,794 - 34,168,638 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Cnbd1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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CNBD1 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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| JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 4 | 49,403,429 - 49,970,329 (-) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 49,500,977 - 49,970,278 (-) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 54,412,738 - 54,697,343 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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CNBD1 (Chlorocebus sabaeus - green monkey) |
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Cnbd1 (Rattus rattus - black rat) |
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QTLs in Region (GRCr8)
| 2293666 | Bmd38 | Bone mineral density QTL 38 | 4.4 | | femur size trait (VT:1000369) | femoral neck cortical cross-sectional area (CMO:0001702) | 5 | 13731153 | 43590997 | Rat | | 1578776 | Stresp18 | Stress response QTL 18 | 2.9 | | thymus mass (VT:0004954) | thymus wet weight (CMO:0000855) | 5 | 32751649 | 77751649 | Rat | | 1576314 | Eutr1 | Estrogen induced uterine response QTL 1 | | | uterus integrity trait (VT:0010575) | pyometritis severity score (CMO:0002009) | 5 | 6922282 | 81330203 | Rat | | 6903306 | Scl35 | Serum cholesterol QTL 35 | 2.6 | 0.0073 | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 33311673 | 78311673 | Rat | | 1358353 | Srcrtb2 | Stress Responsive Cort Basal QTL 2 | 3.48 | 0.003 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 5 | 23671493 | 79046465 | Rat | | 1300117 | Hrtrt8 | Heart rate QTL 8 | 3.49 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 5 | 8627230 | 52665523 | Rat | | 634305 | Mamtr1 | Mammary tumor resistance QTL 1 | | 0.0001 | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 17576633 | 62576633 | Rat | | 7394712 | Emca13 | Estrogen-induced mammary cancer QTL 13 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 14606078 | 59606078 | Rat | | 1578774 | Tcas8 | Tongue tumor susceptibility QTL 8 | 3.47 | | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 5 | 15707451 | 60707451 | Rat | | 1331771 | Rf35 | Renal function QTL 35 | 4.36965 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 10019064 | 91770353 | Rat | | 2312562 | Pur18 | Proteinuria QTL 18 | 2.6 | 0.001 | urine total protein amount (VT:0000032) | urine total protein excretion rate (CMO:0000756) | 5 | 6922282 | 37468560 | Rat | | 2290448 | Scl54 | Serum cholesterol level QTL 54 | 2.93 | | blood cholesterol amount (VT:0000180) | plasma total cholesterol level (CMO:0000585) | 5 | 36460764 | 136631402 | Rat | | 8662454 | Vetf3 | Vascular elastic tissue fragility QTL 3 | 27.4 | | artery integrity trait (VT:0010639) | number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562) | 5 | 7065535 | 74335773 | Rat | | 6903292 | Stl28 | Serum triglyceride level QTL 28 | 2.6 | 0.0073 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 5 | 33311673 | 78311673 | Rat | | 1641903 | Alcrsp3 | Alcohol response QTL 3 | | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 5 | 17486080 | 62486080 | Rat | | 1578767 | Stresp17 | Stress response QTL 17 | 4.3 | 0.01 | blood aldosterone amount (VT:0005346) | plasma aldosterone level (CMO:0000551) | 5 | 32751649 | 77751649 | Rat | | 1331756 | Rf34 | Renal function QTL 34 | 4.16275 | | kidney blood vessel physiology trait (VT:0100012) | absolute change in renal blood flow rate (CMO:0001168) | 5 | 10019064 | 87027358 | Rat | | 8552954 | Pigfal14 | Plasma insulin-like growth factor 1 level QTL 14 | 9 | | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 5 | 26023211 | 71023211 | Rat | | 2303577 | Gluco47 | Glucose level QTL 47 | 3 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 5 | 16520019 | 61520019 | Rat | | 1549901 | Neudeg2 | Neurodegradation QTL 2 | 4 | 0 | nervous system integrity trait (VT:0010566) | mononuclear cell count (CMO:0002119) | 5 | 31130421 | 48841739 | Rat | | 1641922 | Alcrsp8 | Alcohol response QTL 8 | | | alcohol metabolism trait (VT:0015089) | blood ethanol level (CMO:0000535) | 5 | 17486080 | 62486080 | Rat | | 1600358 | Mamtr5 | Mammary tumor resistance QTL 5 | | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 5 | 23671493 | 68671493 | Rat | | 2313085 | Bss59 | Bone structure and strength QTL 59 | 2.9 | 0.0001 | long bone metaphysis morphology trait (VT:0000133) | tibia midshaft total cross-sectional area (CMO:0001715) | 5 | 8627230 | 53627230 | Rat | |