Slc25a18 (solute carrier family 25 member 18)

Gene: Slc25a18 (solute carrier family 25 member 18) Rattus norvegicus

Analyze

Symbol:

Slc25a18

Name:

solute carrier family 25 member 18

RGD ID:

1590470

Description:

Predicted to enable L-aspartate transmembrane transporter activity; L-glutamate transmembrane transporter activity; and amino acid:proton symporter activity. Predicted to be involved in L-glutamate transmembrane transport; aspartate transmembrane transport; and malate-aspartate shuttle. Located in mitochondrial inner membrane. Orthologous to human SLC25A18 (solute carrier family 25 member 18); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

GC-2; glutamate carrier 2, mitochondrial; glutamate/H(+) symporter 2; MGC105602; mitochondrial glutamate carrier 2; solute carrier family 25 (glutamate carrier), member 18; solute carrier family 25 (mitochondrial carrier), member 18

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC25A18 (solute carrier family 25 member 18)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc25a18 (solute carrier family 25 (mitochondrial carrier), member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc25a18 (solute carrier family 25 member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC25A18 (solute carrier family 25 member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC25A18 (solute carrier family 25 member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc25a18 (solute carrier family 25 member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc25a18 (solute carrier family 25 member 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC25A22 (solute carrier family 25 member 22)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	SLC25A18 (solute carrier family 25 member 18)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc25a18 (solute carrier family 25 (mitochondrial carrier), member 18)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc25a18 (solute carrier family 25 member 18)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	GC2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	slc-25A18.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	slc-25A18.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc25a18	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	155,672,939 - 155,693,549 (+)	NCBI		GRCr8
mRatBN7.2	4	154,000,808 - 154,021,373 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	154,000,990 - 154,021,372 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	160,266,348 - 160,286,759 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	156,050,085 - 156,070,496 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	154,673,411 - 154,693,816 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	153,330,069 - 153,350,447 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	153,330,069 - 153,350,446 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	220,420,213 - 220,440,659 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	157,182,532 - 157,202,851 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	142,842,157 - 142,862,546 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

immunodeficiency 51 (ISO)

Neurodevelopmental Disorders (ISO)

Polyarteritis Nodosa, Childhood-Onset (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

cisplatin (ISO)

clobetasol (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP,ISO)

doxorubicin (ISO)

ethanol (EXP,ISO)

indometacin (ISO)

nickel atom (ISO)

paracetamol (ISO)

perfluorononanoic acid (ISO)

silver atom (ISO)

silver(0) (ISO)

thioacetamide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

aspartate transmembrane transport (IBA)

L-aspartate transmembrane transport (IEA)

L-glutamate transmembrane transport (IBA,IEA,ISO,ISS)

malate-aspartate shuttle (IBA,IEA)

proton transmembrane transport (IEA)

Cellular Component

mitochondrial inner membrane (IDA,IEA,ISO)

Molecular Function

amino acid:proton symporter activity (IEA,ISO,ISS)

L-aspartate transmembrane transporter activity (IBA,IEA)

L-glutamate transmembrane transporter activity (IBA,IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mitochondrial glutamate carrier GC1 as a newly identified player in the control of glucose-stimulated insulin secretion.	Casimir M, etal., J Biol Chem. 2009 Sep 11;284(37):25004-14. doi: 10.1074/jbc.M109.015495. Epub 2009 Jul 7.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:12477932	PMID:12865426	PMID:15489334	PMID:29476059

Genomics

Comparative Map Data

Slc25a18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	155,672,939 - 155,693,549 (+)	NCBI		GRCr8
mRatBN7.2	4	154,000,808 - 154,021,373 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	154,000,990 - 154,021,372 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	160,266,348 - 160,286,759 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	156,050,085 - 156,070,496 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	154,673,411 - 154,693,816 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	153,330,069 - 153,350,447 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	153,330,069 - 153,350,446 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	220,420,213 - 220,440,659 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	157,182,532 - 157,202,851 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	142,842,157 - 142,862,546 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

SLC25A18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	17,563,498 - 17,590,995 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	17,563,450 - 17,590,995 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	18,043,198 - 18,073,761 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	16,423,183 - 16,453,647 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	16,417,736 - 16,448,201	NCBI
Celera	22	1,665,610 - 1,693,397 (+)	NCBI		Celera
Cytogenetic Map	22	q11.21	NCBI
HuRef	22	1,861,604 - 1,888,972 (+)	NCBI		HuRef
CHM1_1	22	18,042,781 - 18,073,196 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	18,231,243 - 18,258,739 (+)	NCBI		T2T-CHM13v2.0

Slc25a18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	120,750,527 - 120,771,297 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	120,750,539 - 120,771,297 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	120,773,504 - 120,794,169 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	120,773,578 - 120,794,336 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	120,723,786 - 120,744,000 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	120,739,197 - 120,759,955 (+)	NCBI		MGSCv36	mm8
Celera	6	122,615,935 - 122,636,146 (+)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	57.0	NCBI

Slc25a18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	5,648,255 - 5,668,754 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	5,648,255 - 5,668,754 (+)	NCBI	ChiLan1.0	ChiLan1.0

SLC25A18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	27,878,412 - 27,909,146 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	30,428,544 - 30,456,670 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	991,375 - 1,021,760 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	16,420,684 - 16,451,086 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	16,420,689 - 16,451,086 (+)	Ensembl	panpan1.1		panPan2

SLC25A18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	45,196,172 - 45,221,751 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	45,196,670 - 45,221,297 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	1,461,648 - 1,486,890 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	45,565,890 - 45,591,367 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	45,566,158 - 45,590,915 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	45,494,553 - 45,519,813 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	45,467,890 - 45,493,101 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	815,662 - 841,103 (-)	NCBI		UU_Cfam_GSD_1.0

Slc25a18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	110,376,698 - 110,397,909 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936807	561,004 - 568,639 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936807	553,353 - 570,093 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

Slc25a18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	9,724,167 - 9,739,169 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	9,727,342 - 9,745,832 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc25a18
42 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	315
Count of miRNA genes:	197
Interacting mature miRNAs:	224
Transcripts:	ENSRNOT00000015560
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	148423102	157580971	Rat
1581574	Eae20	Experimental allergic encephalomyelitis QTL 20	7.8		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	153031106	158841762	Rat

Markers in Region

BF386835

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	154,006,116 - 154,006,296 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	153,335,196 - 153,335,375	NCBI	Rnor6.0
Rnor_5.0	4	220,425,340 - 220,425,519	UniSTS	Rnor5.0
RGSC_v3.4	4	157,187,604 - 157,187,783	UniSTS	RGSC3.4
Celera	4	142,847,300 - 142,847,479	UniSTS
RH 3.4 Map	4	993.91	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium									44		7
Low			26	10	16	10	5	6	30	6	26	9	5
Below cutoff	2	27	25	25	3	25	3	5		18	8	2	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286684	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010065706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC094517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG380364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB726923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000015560 ⟹ ENSRNOP00000015561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	154,000,990 - 154,021,372 (+)	Ensembl
Rnor_6.0 Ensembl	4	153,330,069 - 153,350,446 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113398 ⟹ ENSRNOP00000081133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	154,012,112 - 154,021,372 (+)	Ensembl

RefSeq Acc Id:

NM_001044280 ⟹ NP_001037745

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,673,169 - 155,693,549 (+)	NCBI
mRatBN7.2	4	154,000,990 - 154,021,373 (+)	NCBI
Rnor_6.0	4	153,330,069 - 153,350,447 (+)	NCBI
Rnor_5.0	4	220,420,213 - 220,440,659 (+)	NCBI
RGSC_v3.4	4	157,182,532 - 157,202,851 (+)	RGD
Celera	4	142,842,157 - 142,862,546 (+)	NCBI

Sequence:

show sequence

AGAATCCTGTCAGCTCATTTCTGACCACATAGGACCATTCGCCCTAGTCTGTCCAGTTAAAGCT
GGGAAGAGTTGTTTGAAGCAGTGAAGTCAGCTCCTTCACCAAGAGTTTTCACCATGAGAAGGAG
TTAAGTCTTTATAGGAAGGCAAAGACAAGATCCAACACAGCCTGGCCTGGAGTATACCAAAAAC
TGAGATGTGGAGTGACTCCTAACCACCTTGTCACATCTGCCTGTGAAGGCCCCACAACCTGTGT
CCTGGGAGCTGTCGTGGATGATCGCCTGCAGGATGTCCAGCCAGGACCTGAGCATCACTGCAAA
ACTCATCAATGGAGGTATAGCAGGTCTCGTGGGGGTGACCTGCGTGTTCCCCATTGACCTTGCC
AAAACCCGACTGCAGAACCAGCAAGGGAAAGATGTGTACAAAGGAATGACAGATTGCCTGGTGA
AGACTGCACGTGCCGAGGGCTTCTTGGGCATGTACCGAGGGGCTGCAGTGAACCTCACCCTGGT
CACTCCAGAAAAAGCAATCAAGTTGGCAGCCAATGACTTCTTGAGGCAGCTGCTCATGCAAGAT
GGGACCCAGCGGAACCTGAAGATGGAGATGCTGGCCGGATGTGGGGCTGGAATATGCCAGGTGG
TGATCACCTGTCCCATGGAAATGCTCAAGATCCAGCTGCAGGATGCCGGCCGCTTAGCTGTCTG
TCAGCAGGCTTCTGCCTCAGCCACGCCCACCTCCCGGCCCTACAGCACTGGCTCGACTTCCACC
CACAGGCGCCCATCGGCCACCCTCATTGCCTGGGAGCTGCTCCGCACTCAGGGCCTCTCTGGTC
TCTACAGGGGACTGGGTGCTACTCTCCTCAGAGACATTCCTTTCTCCATCATCTACTTCCCTTT
GTTTGCAAACCTGAACCAACTTGGGGTCAGCGAGCTCACTGGCAAGGCCTCCTTCACACACTCC
TTTGTGGCAGGCTGTGCAGCAGGCTCTGTCTCGGCCGTAGCTGTCACCCCTCTGGATGTTCTGA
AGACTCGAATCCAGACCCTCAAGAAAGGCCTGGGTGAGGACACCTACAGGGGAGTCACTGACTG
TGCCAGGAAACTCTGGACCCAGGAGGGAGCAGCAGCCTTCATGAAGGGAGCAGGCTGCCGTGCC
CTGGTCATAGCCCCCCTCTTCGGGATTGCCCAGGGTGTCTACTTCATCGGCATTGGAGAGCGCA
TCTTAAAGTGCTTTGAATAATTGATGTGTTACTTCTTGCTGTCACCTCTGGCCCTAGGGAACCA
GGCGGCAGTGCTGAAGTTTAGGATGCCCACCCTGATGTAGTACATGGTCTCTAACTTGTAGTGC
TACCTCAGAAGAAATGACCCATTTTACTAAGTGAGTAGAGCCCTCATCTCCCTTTATAACTAAG
CTTTGTGGTTCGGCCTACCAGGGATGTTCAGAAGCCCCAACCACCTATGTCCAGCAATAGAATT
GGCCTTGTGTATTATGGCAGGACCGTGTACAGTAAGACAGAAGGGCTGTTCCACCCTAACATTC
CCACCGTAGGCGAGTGCAGCACAGACCCGTCCTGTGAGGGTTTACTGTTAATGCTAGCCCTGAT
GCTGTAACAGGTCAGAAGTGTCCCTGGGCTGACTGTGCACCCTCCCGAGCATCACCCATAGTGA
GGCGAGCCTGAATGAGCACTTGGCAGCTGTCCTGCCAGATTCCCATCCTGAAGTACGGGCCCAG
ATCCCTCCGAATGGATGCTTGTGCAACATGCTCTGAAATAAAGCTGGTTAAATCCTTGTCCTGT
GATCAGCACAGCAGTGAGCACAACACAGAGTGACATTCTGCAGAACCAAGCTGTAGCTTCTAGG
GCCCCGCAGTCCACACTATCTTCCCACTGCTGCTCAAGAGTGAGAGTGGTTGGGGGCCAATTTT
ACACTGGAGTTTGGCTTTTTTAAAAAATAATTATGCACTAATTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039108347 ⟹ XP_038964275

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,682,881 - 155,693,549 (+)	NCBI
mRatBN7.2	4	154,010,702 - 154,021,373 (+)	NCBI

RefSeq Acc Id:

XM_039108348 ⟹ XP_038964276

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,672,990 - 155,693,549 (+)	NCBI
mRatBN7.2	4	154,000,808 - 154,021,373 (+)	NCBI

RefSeq Acc Id:

XM_063286684 ⟹ XP_063142754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,673,472 - 155,693,549 (+)	NCBI

RefSeq Acc Id:

XM_063286685 ⟹ XP_063142755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,682,929 - 155,693,549 (+)	NCBI

RefSeq Acc Id:

XM_063286686 ⟹ XP_063142756

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,684,752 - 155,693,549 (+)	NCBI

RefSeq Acc Id:

XR_010065706

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	155,672,939 - 155,692,249 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001037745	(Get FASTA)	NCBI Sequence Viewer
	XP_038964275	(Get FASTA)	NCBI Sequence Viewer
	XP_038964276	(Get FASTA)	NCBI Sequence Viewer
	XP_063142754	(Get FASTA)	NCBI Sequence Viewer
	XP_063142755	(Get FASTA)	NCBI Sequence Viewer
	XP_063142756	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH94517	(Get FASTA)	NCBI Sequence Viewer
	EDM02029	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000015561
	ENSRNOP00000015561.4
	ENSRNOP00000081133
	ENSRNOP00000081133.1
	ENSRNOP00055014591
	ENSRNOP00060035728
	ENSRNOP00065041180
GenBank Protein	Q505J6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001037745 ⟸ NM_001044280

- UniProtKB:

Q505J6 (UniProtKB/Swiss-Prot), A6ILB0 (UniProtKB/TrEMBL), A0A8I5ZRK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MIACRMSSQDLSITAKLINGGIAGLVGVTCVFPIDLAKTRLQNQQGKDVYKGMTDCLVKTARAE
GFLGMYRGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPM
EMLKIQLQDAGRLAVCQQASASATPTSRPYSTGSTSTHRRPSATLIAWELLRTQGLSGLYRGLG
ATLLRDIPFSIIYFPLFANLNQLGVSELTGKASFTHSFVAGCAAGSVSAVAVTPLDVLKTRIQT
LKKGLGEDTYRGVTDCARKLWTQEGAAAFMKGAGCRALVIAPLFGIAQGVYFIGIGERILKCFE

hide sequence

RefSeq Acc Id:

ENSRNOP00000015561 ⟸ ENSRNOT00000015560

RefSeq Acc Id:	XP_038964276 ⟸ XM_039108348
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038964275 ⟸ XM_039108347
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZRK2 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000081133 ⟸ ENSRNOT00000113398

RefSeq Acc Id:	XP_063142754 ⟸ XM_063286684
- Peptide Label:	isoform X1
- UniProtKB:	Q505J6 (UniProtKB/Swiss-Prot), A6ILB0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142755 ⟸ XM_063286685
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063142756 ⟸ XM_063286686
- Peptide Label:	isoform X4

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q505J6-F1-model_v2	AlphaFold	Q505J6	1-320	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1590470	AgrOrtholog
BioCyc Gene	G2FUF-43191	BioCyc
Ensembl Genes	ENSRNOG00000042731	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055010733	UniProtKB/Swiss-Prot
	ENSRNOG00060024875	UniProtKB/Swiss-Prot
	ENSRNOG00065028993	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000015560	ENTREZGENE
	ENSRNOT00000015560.8	UniProtKB/Swiss-Prot
	ENSRNOT00000113398	ENTREZGENE
	ENSRNOT00000113398.1	UniProtKB/TrEMBL
	ENSRNOT00055018158	UniProtKB/Swiss-Prot
	ENSRNOT00060043170	UniProtKB/Swiss-Prot
	ENSRNOT00065050127	UniProtKB/Swiss-Prot
Gene3D-CATH	1.50.40.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7314749	IMAGE-MGC_LOAD
InterPro	Mit_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mitochondrial_sb/sol_carrier	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Mt_carrier_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:681896	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:105602	IMAGE-MGC_LOAD
NCBI Gene	681896	ENTREZGENE
PANTHER	MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	MITOCHONDRIAL GLUTAMATE CARRIER 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Mito_carr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc25a18	PhenoGen
PRINTS	MITOCARRIER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	SOLCAR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000042731	RatGTEx
	ENSRNOG00055010733	RatGTEx
	ENSRNOG00060024875	RatGTEx
	ENSRNOG00065028993	RatGTEx
Superfamily-SCOP	SSF103506	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZRK2	ENTREZGENE, UniProtKB/TrEMBL
	A6ILB0	ENTREZGENE, UniProtKB/TrEMBL
	GHC2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc25a18	solute carrier family 25 member 18	Slc25a18	solute carrier family 25 (glutamate carrier), member 18	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-10-16	Slc25a18	solute carrier family 25 (glutamate carrier), member 18	Slc25a18	solute carrier family 25 (mitochondrial carrier), member 18	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Slc25a18	solute carrier family 25 (mitochondrial carrier), member 18	Slc25a18	solute carrier family 25 member 18	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	Slc25a18	solute carrier family 25 member 18			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar