Advanced Search (OLGA)

Gene: C8h3orf62 (similar to human chromosome 3 open reading frame 62) Rattus norvegicus

Analyze

Symbol:

C8h3orf62

Name:

similar to human chromosome 3 open reading frame 62

RGD ID:

1589651

Description:

Predicted to be involved in spermatogenesis. Orthologous to human C3orf62 (chromosome 3 open reading frame 62); INTERACTS WITH (-)-demecolcine (ortholog); 2-hydroxypropanoic acid (ortholog); 2-palmitoylglycerol (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical LOC498675; hypothetical protein LOC498675; LOC498675; uncharacterized protein C3orf62 homolog; uncharacterized protein LOC498675

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,958,583 - 117,963,137 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,958,576 - 117,963,201 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,080,032 - 109,084,588 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,036,030 - 109,097,895 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,707,326 - 114,711,961 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,906,657 - 112,911,292 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,749,304 - 110,753,940 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,170,620 - 117,175,235 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,170,620 - 117,175,235 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,518,983 - 116,523,598 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	108,382,743 - 108,387,341 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-demecolcine (ISO)

2-hydroxypropanoic acid (ISO)

2-palmitoylglycerol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (ISO)

butanal (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

hydralazine (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

rotenone (ISO)

sodium arsenite (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

protein deubiquitination (IEA)

spermatogenesis (IEA,ISO)

Molecular Function

cysteine-type deubiquitinase activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16751776

Genomics

Comparative Map Data

C8h3orf62
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	117,958,583 - 117,963,137 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	117,958,576 - 117,963,201 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,080,032 - 109,084,588 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,036,030 - 109,097,895 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,707,326 - 114,711,961 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,906,657 - 112,911,292 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,749,304 - 110,753,940 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,170,620 - 117,175,235 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,170,620 - 117,175,235 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,518,983 - 116,523,598 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	108,382,743 - 108,387,341 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

C3orf62
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,268,596 - 49,277,232 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,268,596 - 49,277,232 (-)	Ensembl			hg38	GRCh38
GRCh37	3	49,306,029 - 49,314,665 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,281,223 - 49,289,456 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	49,269,717 - 49,277,952 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,363,351 - 49,371,827 (-)	NCBI		HuRef
CHM1_1	3	49,258,841 - 49,267,310 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,296,676 - 49,305,312 (-)	NCBI		T2T-CHM13v2.0

1700102P08Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,270,023 - 108,275,416 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,270,004 - 108,288,133 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	108,392,824 - 108,411,440 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,392,805 - 108,410,934 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	108,295,165 - 108,300,101 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,250,929 - 108,255,858 (+)	NCBI		MGSCv36	mm8
Celera	9	108,002,041 - 108,006,978 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.3	NCBI

CUNH3orf62
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955532	1,243,732 - 1,245,499 (-)	NCBI	ChiLan1.0	ChiLan1.0

C2H3orf62
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,246,081 - 49,253,627 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,249,907 - 49,258,395 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,191,640 - 49,199,806 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	50,273,460 - 50,279,995 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	50,273,460 - 50,279,995 (-)	Ensembl			panPan2	panpan1.1

C20H3orf62
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	39,953,285 - 39,959,112 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	39,953,764 - 39,956,754 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,871,616 - 39,877,439 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	40,310,105 - 40,315,927 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	40,310,581 - 40,313,572 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	39,677,051 - 39,682,874 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	40,080,919 - 40,086,749 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	40,360,345 - 40,366,176 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH3orf62
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,174,098 - 64,180,383 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	936,848 - 940,367 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	934,641 - 940,858 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C13H3orf62
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,845,055 - 31,848,482 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	31,840,281 - 31,848,825 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	35,075,788 - 35,079,841 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C22H3orf62
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	10,660,873 - 10,672,712 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	10,666,310 - 10,671,639 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	156,354,459 - 156,382,708 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH3orf62
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	3,249,482 - 3,251,966 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	3,249,440 - 3,252,795 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C8H3orf62
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	99,721,534 - 99,725,782 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C8h3orf62
44 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	51
Count of miRNA genes:	49
Interacting mature miRNAs:	50
Transcripts:	ENSRNOT00000075271
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

RH132731

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,080,249 - 109,080,399 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,170,835 - 117,170,984	NCBI	Rnor6.0
Rnor_5.0	8	116,519,198 - 116,519,347	UniSTS	Rnor5.0
Celera	8	108,382,941 - 108,383,090	UniSTS
Cytogenetic Map	16	q12.5	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	157	91	90	59	89	59	6	350	188	11	136	79	92	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109113	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595813	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DQ620572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000075271 ⟹ ENSRNOP00000066835

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,958,576 - 117,963,201 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,080,032 - 109,084,650 (+)	Ensembl
Rnor_6.0 Ensembl	8	117,170,620 - 117,175,235 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095427 ⟹ ENSRNOP00000093480

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	117,958,767 - 117,963,201 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,080,032 - 109,097,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112882 ⟹ ENSRNOP00000082514

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	109,036,030 - 109,084,650 (+)	Ensembl

RefSeq Acc Id:

NM_001109113 ⟹ NP_001102583

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,958,583 - 117,963,137 (+)	NCBI
mRatBN7.2	8	109,080,032 - 109,084,588 (+)	NCBI
Rnor_6.0	8	117,170,620 - 117,175,235 (+)	NCBI
Rnor_5.0	8	116,518,983 - 116,523,598 (+)	NCBI
Celera	8	108,382,743 - 108,387,341 (+)	ENTREZGENE

Sequence:

show sequence

GGGCACTCGTGTGCGGCAACGGCTGGGGAAATGTCTGAAAAACTACGAAGATGCAGAAAGGAGC
TGACTGCTGCCATAGACCGAGCCTTTGAAGGAGTCAGGCATTCTCAGGAGTGCACTGCCCAGCA
GAGGCTGGACGTCCCGTCGCTCACCTCCCTACCGGTACACAGGCTCCTCTGCAGAAACCCACTG
GCAGCTTGCCCCTCTGCTGCCCCATGCCCTGGCACCTCATGTGCTCCCGAGAATGAGAACCCTG
CCTTTGGGCCACACCATATTCCAGTTAATGCAAAACCCCAGCCTCTATACCCCAAAAGAAAGCC
TCTGACCAGCAAAGAAAATGTCTTGATGCACTCCTCCATTCTGGCACGTGAAAGACAGTTTTGG
AGAGCTGCGGGAGATGGGGAAAACTGGAGAAAAGAGAGTTTAAGGAAGGGTATGGAGAGAGAGT
TAAAAGCTGACCCACATATGCCGCTCAGCAGTTCTAGCCAAGAGGTCACACAGGATCTGCTAGA
CATGATTGACCATACAAGTATCCGAACTATTGAAGAACTGGCTGGAAAACTAGAATTTGAAAAC
GAGTTGAACCGTGTGTGTGGACGCTGCCAGGATTCACCCTTCAAGGAGGAAGCCTGGGCCCTGC
TTGTGGATGAGAGTCCGCAGAAGGCTTTGGATTCTGACCCCGGTAGCCTCAAGCAGGCTTTGGA
TGATCAGAACATTGTGGAGACTGTTCTGGACTTGGAGGAAGACTACAACTTGATGACCTCTTTC
AAATACCAAATAGAGTGAGGAGAGTCAGCAGCCACAGTGGTTCTCACAAGGGGTTGGCAGAGCC
TGAAGCCACCCCTGTCTTAATTTCTGCTGAATCCCATTTTGAGCTGAGAGCCCAGGTTTTAATA
TTGTTATTTTGAAATGTTTGGAGTGTTTTGGACTTGACATTTTTTAAAGTGTGTTAGAGGCTCT
ACCTCTGCTCTGCCCTTTGTCCTTGTATTCTTTTAAATGAAACCCTGGAAAAATACAGGGACC

hide sequence

RefSeq Acc Id:

XM_017595813 ⟹ XP_017451302

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	117,958,639 - 117,963,137 (+)	NCBI
mRatBN7.2	8	109,080,087 - 109,084,588 (+)	NCBI
Rnor_6.0	8	117,170,806 - 117,175,174 (+)	NCBI

Sequence:

show sequence

CCCCCCCCCCCCCCCGTGACCTAGGGTCCCCTGAGAATGGCGGGTGATACTCCCCTCTCAGAGG
AAAAAAACGAAGGATGATGTTGTATAACTGTAGCTGAAACTCGAAATCGGGGTTGGATCTCAGC
CTCTTGTATAGAAGCATCATTCTCACGTTGCTCCGTGCATGTGAAATTATTACTTAATAAAAAA
AGGCATGGTCACTTTTAGGGAAATGTCTGAAAAACTACGAAGATGCAGAAAGGAGCTGACTGCT
GCCATAGACCGAGCCTTTGAAGGAGTCAGGCATTCTCAGGAGTGCACTGCCCAGCAGAGGCTGG
ACGTCCCGTCGCTCACCTCCCTACCGGTACACAGGCTCCTCTGCAGAAACCCACTGGCAGCTTG
CCCCTCTGCTGCCCCATGCCCTGGCACCTCATGTGCTCCCGAGAATGAGAACCCTGCCTTTGGG
CCACACCATATTCCAGTTAATGCAAAACCCCAGCCTCTATACCCCAAAAGAAAGCCTCTGACCA
GCAAAGAAAATGTCTTGATGCACTCCTCCATTCTGGCACGTGAAAGACAGTTTTGGAGAGCTGC
GGGAGATGGGGAAAACTGGAGAAAAGAGAGTTTAAGGAAGGGTATGGAGAGAGAGTTAAAAGCT
GACCCACATATGCCGCTCAGCAGTTCTAGCCAAGAGGTCACACAGGATCTGCTAGACATGATTG
ACCATACAAGTATCCGAACTATTGAAGAACTGGCTGGAAAACTAGAATTTGAAAACGAGTTGAA
CCGTGTGTGTGGACGCTGCCAGGATTCACCCTTCAAGGAGGAAGCCTGGGCCCTGCTTGTGGAT
GAGAGTCCGCAGAAGGCTTTGGATTCTGACCCCGGTAGCCTCAAGCAGGCTTTGGATGATCAGA
ACATTGTGGAGACTGTTCTGGACTTGGAGGAAGACTACAACTTGATGACCTCTTTCAAATACCA
AATAGAGTGAGGAGAGTCAGCAGCCACAGTGGTTCTCACAAGGGGTTGGCAGAGCCTGAAGCCA
CCCCTGTCTTAATTTCTGCTGAATCCCATTTTGAGCTGAGAGCCCAGGTTTTAATATTGTTATT
TTGAAATGTTTGGAGTGTTTTGGACTTGACATTTTTTAAAGTGTGTTAGAGGCTCTAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102583	(Get FASTA)	NCBI Sequence Viewer
	XP_017451302	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77176	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066835
	ENSRNOP00000066835.1
	ENSRNOP00000082514.2
	ENSRNOP00000093480
	ENSRNOP00000093480.2

RefSeq Acc Id:

NP_001102583 ⟸ NM_001109113

- UniProtKB:

M0RBA6 (UniProtKB/TrEMBL), A6I351 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDVPSLTSLPVHRLLCRNPLAACPSAAPCP
GTSCAPENENPAFGPHHIPVNAKPQPLYPKRKPLTSKENVLMHSSILARERQFWRAAGDGENWR
KESLRKGMERELKADPHMPLSSSSQEVTQDLLDMIDHTSIRTIEELAGKLEFENELNRVCGRCQ
DSPFKEEAWALLVDESPQKALDSDPGSLKQALDDQNIVETVLDLEEDYNLMTSFKYQIE

hide sequence

RefSeq Acc Id:	XP_017451302 ⟸ XM_017595813
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZVE8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVTFREMSEKLRRCRKELTAAIDRAFEGVRHSQECTAQQRLDVPSLTSLPVHRLLCRNPLAACP SAAPCPGTSCAPENENPAFGPHHIPVNAKPQPLYPKRKPLTSKENVLMHSSILARERQFWRAAG DGENWRKESLRKGMERELKADPHMPLSSSSQEVTQDLLDMIDHTSIRTIEELAGKLEFENELNR VCGRCQDSPFKEEAWALLVDESPQKALDSDPGSLKQALDDQNIVETVLDLEEDYNLMTSFKYQI E hide sequence

Ensembl Acc Id:

ENSRNOP00000066835 ⟸ ENSRNOT00000075271

Ensembl Acc Id:

ENSRNOP00000082514 ⟸ ENSRNOT00000112882

Ensembl Acc Id:

ENSRNOP00000093480 ⟸ ENSRNOT00000095427

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RBA6-F1-model_v2	AlphaFold	M0RBA6	1-251	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696299

Promoter ID:

EPDNEW_R6823

Type:

multiple initiation site

Name:

LOC498675_1

Description:

hypothetical LOC498675

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	117,170,620 - 117,170,680	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589651	AgrOrtholog
BioCyc Gene	G2FUF-29145	BioCyc
Ensembl Genes	ENSRNOG00000046155	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00000054863	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000075271	ENTREZGENE
	ENSRNOT00000075271.3	UniProtKB/TrEMBL
	ENSRNOT00000095427	ENTREZGENE
	ENSRNOT00000095427.2	UniProtKB/TrEMBL
	ENSRNOT00000112882.2	UniProtKB/TrEMBL
InterPro	DUF4712	UniProtKB/TrEMBL
KEGG Report	rno:498675	UniProtKB/TrEMBL
NCBI Gene	498675	ENTREZGENE
PANTHER	HYPOTHETICAL LOC498675	UniProtKB/TrEMBL
	PTHR36680	UniProtKB/TrEMBL
Pfam	DUF4712	UniProtKB/TrEMBL
PhenoGen	C8h3orf62	PhenoGen
RatGTEx	ENSRNOG00000046155	RatGTEx
	ENSRNOG00000054863	RatGTEx
UniProt	A0A8I5ZVE8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AJQ1_RAT	UniProtKB/TrEMBL
	A6I351	ENTREZGENE, UniProtKB/TrEMBL
	M0RBA6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C8h3orf62	similar to human chromosome 3 open reading frame 62	LOC498675	hypothetical LOC498675	Symbol and Name Changed	1299863	APPROVED
2006-11-19	LOC498675	hypothetical LOC498675			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message