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Gene: Slc35f3 (solute carrier family 35, member F3) Rattus norvegicus

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Symbol:

Slc35f3

Name:

solute carrier family 35, member F3

RGD ID:

1589548

Description:

Predicted to be involved in thiamine transport. Predicted to be located in membrane. Orthologous to human SLC35F3 (solute carrier family 35 member F3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC679321; putative thiamine transporter SLC35F3; similar to solute carrier family 35, member F3; solute carrier family 35 member F3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC35F3 (solute carrier family 35 member F3)	HGNC	Ensembl, HomoloGene, OrthoDB, Panther
Mus musculus (house mouse):	Slc35f3 (solute carrier family 35, member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc35f3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC35F3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC35F3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc35f3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC35F3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC35F3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc35f3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Slc35f3 (solute carrier family 35 member F3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SFTPC (surfactant protein C)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC35F3 (solute carrier family 35 member F3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc35f3 (solute carrier family 35, member F3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35f3b (solute carrier family 35 member F3b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc35f3a (solute carrier family 35 member F3a)	Alliance	DIOPT (Ensembl Compara\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	Y73B6BL.31	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y73B6BL.31	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG42322	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG42322	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc35f3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	71,000,144 - 71,270,829 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	71,000,265 - 71,269,517 (+)	Ensembl				GRCr8
mRatBN7.2	19	54,102,811 - 54,371,765 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	54,103,120 - 54,372,839 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	58,968,036 - 59,305,300 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	59,186,673 - 59,304,832 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	69,870,274 - 69,944,786 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	19	53,461,332 - 53,727,486 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,4'-trichlorobiphenyl (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

arsenite(3-) (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

carbon nanotube (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

dorsomorphin (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

genistein (ISO)

GW 4064 (ISO)

lipopolysaccharide (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

propanal (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

Theaflavin 3,3'-digallate (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

choline transport (IEA,ISO)

thiamine transport (IBA,IEA,ISO)

Cellular Component

membrane (IEA)

Molecular Function

choline transmembrane transporter activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24509276

Genomics

Comparative Map Data

Slc35f3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	71,000,144 - 71,270,829 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	71,000,265 - 71,269,517 (+)	Ensembl				GRCr8
mRatBN7.2	19	54,102,811 - 54,371,765 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	54,103,120 - 54,372,839 (+)	Ensembl				mRatBN7.2
Rnor_6.0	19	58,968,036 - 59,305,300 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	59,186,673 - 59,304,832 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	69,870,274 - 69,944,786 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	19	53,461,332 - 53,727,486 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

SLC35F3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	233,904,676 - 234,324,511 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	233,904,676 - 234,324,511 (+)	Ensembl			hg38	GRCh38
GRCh37	1	234,040,422 - 234,460,257 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	232,107,302 - 232,526,885 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	230,347,413 - 230,766,997	NCBI
Celera	1	207,636,740 - 207,731,155 (+)	NCBI		Celera
Cytogenetic Map	1	q42.2	NCBI
HuRef	1	204,531,977 - 204,953,282 (+)	NCBI		HuRef
CHM1_1	1	235,312,534 - 235,732,574 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	233,291,129 - 233,714,625 (+)	NCBI		T2T-CHM13v2.0

Slc35f3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	126,865,155 - 127,122,726 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	126,865,734 - 127,122,717 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	126,138,398 - 126,395,987 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	126,138,995 - 126,395,978 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	128,822,479 - 128,919,878 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	129,184,689 - 129,281,572 (+)	NCBI		MGSCv36	mm8
Celera	8	130,608,290 - 130,707,988 (+)	NCBI		Celera
Cytogenetic Map	8	E2	NCBI
cM Map	8	73.82	NCBI

Slc35f3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955492	5,348,949 - 5,441,865 (-)	Ensembl
ChiLan1.0	NW_004955492	5,349,445 - 5,661,186 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC35F3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	14,875,301 - 15,299,509 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	15,086,117 - 15,510,336 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	209,442,942 - 209,865,001 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	214,471,416 - 214,887,155 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	214,471,590 - 214,887,150 (+)	Ensembl			panPan2	panpan1.1

SLC35F3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	5,526,010 - 5,915,965 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	5,460,906 - 5,915,942 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	5,507,765 - 5,896,249 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	5,546,211 - 5,935,089 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	5,478,898 - 5,935,708 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	5,558,457 - 5,946,040 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	5,676,096 - 6,064,712 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	5,898,791 - 6,287,742 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Slc35f3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	41,684,051 - 41,923,503 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936484	17,848,988 - 18,089,048 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936484	17,849,285 - 18,088,797 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC35F3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	56,786,918 - 57,106,772 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	56,786,918 - 56,881,046 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	60,839,444 - 60,933,544 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC35F3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	71,101,951 - 71,507,323 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	71,416,089 - 71,506,080 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	73,091,602 - 73,531,516 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc35f3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624775	15,996,602 - 16,084,601 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624775	15,998,318 - 16,330,835 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Slc35f3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	45,645,350 - 45,910,726 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	106
Count of miRNA genes:	90
Interacting mature miRNAs:	96
Transcripts:	ENSRNOT00000071655
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat

Markers in Region

D19Got136

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	19	71,252,163 - 71,252,296 (+)	Marker Load Pipeline
mRatBN7.2	19	54,354,841 - 54,354,974 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	59,251,019 - 59,251,151	NCBI	Rnor6.0
Rnor_5.0	19	69,932,361 - 69,932,493	UniSTS	Rnor5.0
Celera	19	53,710,116 - 53,710,248	UniSTS

BE121432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	54,351,550 - 54,351,730 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	59,247,728 - 59,247,907	NCBI	Rnor6.0
Rnor_5.0	19	69,929,070 - 69,929,249	UniSTS	Rnor5.0
Celera	19	53,706,825 - 53,707,004	UniSTS
RH 3.4 Map	19	749.0	UniSTS

UniSTS:224636

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	19	54,107,343 - 54,107,507 (+)	MAPPER	mRatBN7.2
Rnor_6.0	19	58,973,623 - 58,973,786	NCBI	Rnor6.0
Rnor_5.0	19	69,666,220 - 69,666,383	UniSTS	Rnor5.0
RGSC_v3.4	19	56,365,868 - 56,366,031	UniSTS	RGSC3.4
Celera	19	53,466,918 - 53,467,081	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	4	26	121	46	40	26	10	26	6	156	52	114	65	91	14	8	8

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431967	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003753126	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008772680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587988	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000071655 ⟹ ENSRNOP00000066373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	71,000,265 - 71,269,517 (+)	Ensembl
mRatBN7.2 Ensembl	19	54,103,120 - 54,372,839 (+)	Ensembl
Rnor_6.0 Ensembl	19	59,186,673 - 59,304,832 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097403 ⟹ ENSRNOP00000097871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	71,000,397 - 71,269,517 (+)	Ensembl
mRatBN7.2 Ensembl	19	54,103,627 - 54,372,839 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103419 ⟹ ENSRNOP00000097395

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	71,167,097 - 71,269,517 (+)	Ensembl
mRatBN7.2 Ensembl	19	54,269,690 - 54,372,839 (+)	Ensembl

RefSeq Acc Id:

XM_017601462 ⟹ XP_017456951

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	71,000,144 - 71,270,829 (+)	NCBI
mRatBN7.2	19	54,102,811 - 54,371,765 (+)	NCBI
Rnor_6.0	19	58,968,849 - 59,305,300 (+)	NCBI

Sequence:

show sequence

ACTTGATTCGGCAGTTGCCCCCTATTCTAAATAAGCCACTCTGGGTGCGCTGTGAAATGCCAGG
TTACTTTGCTTTTTGCTTTCATAGTAGCACCGTTCTTTGGGGTGGCGCGCGTGTGCGTTTGTGT
TTGGGGTGGGTGTTGGGGGAGAGACCAAGAGACTCACGTGTCAAAACCAGAACGCCAGGACCGT
GACAGGTCCCGCGCCCTAAGGTTGCAGAGCTCGCAGAGCCTGGCATACACGGGGCGGTGAGGAT
CTGAACGCGCGCCCCCGCCTGGGTCCACGCGCGTCGAGGCCGCCACAGCCTCTCGTCCCGGTGG
CTCCGGAGCGCACTGCCGGGCGCGCTCTCCGGAGCTTGGGCGTCCGCGACTGGCGTCCTAGGGC
GCCAGCGGTGGCAGGCGAGGGGCGCGGCGTTGCTCTGCCACCCGCTCCCAGCAGCGGGCGCGGG
CGTCCTACGGGCGTCCGGACCTTCGCCACAGCTGCGGGGAGCTCGGGCCGCGGCTCCCCGGGCT
CCAGCCTGGGCGCCCCAGGCCACTCGCTGCCGCCGCCCATGGGGATCCGAGAGTTTCCCGGCGG
CGCGCCCAGGGCCAAGAGCATTGCTGTTGGCATGAGGAGGTCACCGGACGTCAGCCCGCGGAGA
CTGTCCGACATCAGCCCTCAGCTCCGGCAGCTCAAGTACTTGGTGGTGGACGAGGCGATCAAGG
AGGATCTGAAATGGTCGCGTTCTGTGGAGGACCTCACCAGCGGACCGGTGGGACTCACGTCCAT
CGAGGAGCGAATCCTGCGCATCACAGGCTACTATGGCTACCAGCCCTGGGCGACCAGCTACAAA
AGGGAGGAGCGCCCCCGGGAGCCCCCGGGCCCTGCAGAGGCCCAGGCGCCAGCTGGGACGGAGG
CTGGCGGGAGGACCAGCCGGCACCACTGGACATGTTCTCAGGAGCAGCTCAGAAAGGTCTTCTG
GGGAGTGGCTGTCGTGTTCTGCGTGTGTGCCTCCTGGTCGGGGTCCACGCAGCTCGCCAGGCTG
ACTTTCAAGACCTTCGACGCACCCTTCACCCTGACGTGGTTTGCCACCAACTGGAACTTTCTGT
TCTTCCCATTGTACTACGCAGGTCACGTGTGCAAGTCCACAGAGAAGCAGTCTGTGAAACAGAG
ATACAGGGAATGCTGTCGGTTTTTTGGAGACAATGGCTTGACTTTGAAAGTGTTCTTTACCAAG
GCAGCACCTTTTGGTGTTCTTTGGACTCTCACAAACTACCTGTACTTACATGCAATAAAGAAGA
TAAACGCTACAGACGTCTCCGTTCTGTTCTGCTGCAACAAGTCATTTGTTTTCTTGCTGTCGTG
GATCGTTCTCAGGGACAGATTCATGGGAGTGAGGATCGTGGCCGCCATCCTTGCCATCGCAGGC
ATTGTCATGATGACCTACGCCGATGGCTTCCACAGTCATTCAGTCATTGGCATAGCCCTGGTGG
TGGGCTCTGCCTCCATGTCAGCCCTCTACAAGGTTCTGTTCAAGCTGCTGCTAGGCAGCGCCAA
GTTCGGAGAAGCGGCCTTATTCCTGTCCATCTTGGGGGTGTTCAACATCCTCTTCATCACCTGC
ATCCCCATCATCCTCTACTTCACCAGAGTGGAGTACTGGAACTCCTTCGATGACATTCCGTGGG
GAAACCTCTGTGGGTTTTCCATTCTCTTATTGACATTCAATATTGTATTAAATTTTGGAATCGC
TGTCACGTATCCCACGCTGATGTCTCTTGGAATTGTCCTCAGTGTACCTGTAAATGCAGTGGTC
GACCACTACACCAGTCAGATCGTCTTCAACGGGGTCCGGGTCATCGCCATCATCATTATCGGCC
TGGGCTTCCTCCTCCTGCTCCTTCCAGAAGAGTGGGATGTCTGGTTGATCAAGTTGCTCACCCG
CCTCAAAGTGAGGAAGAAGGAGGAGACAGCGGAGAGCAGCGGGGACTTGGGCACAGGTCCCCAG
AGCAGGAGCAGAAGAGCCCGCCCATCCTTTGCTCGCTGAGAAAACTCCTCTAGAACTCTGGGAT
GCCCCCATGGTAATGTTTCTGAGGTCTATTCCTGAGGGAGGAACCTCAGTTGGGTGAGGTGTAC
ATACATGTACAGTTTTGGTAACCGCGGTAAGTTCTACGGTATTTATTGGCATGTCCAATTTGCT
TGCACTTTTTCACGTCAGACCTTCCACTAAGGGTACCGATTCAAAACAGATGAGAAATGAACCT
CTCAGAGCTTCTTCAATGAATGTAAAGTGGGGTAAAACGAGCCTTGTGTCGGTCTCTTCAGAGG
ACAGGCAAGCTGGACAAGCCAGGGCAAAGGCTCTGCCTCTTAGCAATTGAAAATGACATTGTGC
ACTGTGATTATTTTTCAGCTATAGTAGGTCATATTTTGTTTTATACCAGAACTGTATACTTAAT
TTTAAGGAATCTCAATGAACCAAAAGAGAATTGTCAGTTACTCTGGGTGGATGGGTGGA

hide sequence

RefSeq Acc Id:

XM_039098216 ⟹ XP_038954144

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	71,167,012 - 71,270,829 (+)	NCBI
mRatBN7.2	19	54,269,670 - 54,371,765 (+)	NCBI

RefSeq Acc Id:

XM_063278873 ⟹ XP_063134943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	71,000,540 - 71,270,829 (+)	NCBI

RefSeq Acc Id:

XM_063278874 ⟹ XP_063134944

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	71,000,170 - 71,270,829 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418896	(Get FASTA)	NCBI Sequence Viewer
	NP_001418897	(Get FASTA)	NCBI Sequence Viewer
	XP_017456951	(Get FASTA)	NCBI Sequence Viewer
	XP_038954144	(Get FASTA)	NCBI Sequence Viewer
	XP_063134943	(Get FASTA)	NCBI Sequence Viewer
	XP_063134944	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000066373
	ENSRNOP00000066373.3
	ENSRNOP00000097395
	ENSRNOP00000097395.1
	ENSRNOP00000097871
	ENSRNOP00000097871.2

RefSeq Acc Id:

XP_017456951 ⟸ XM_017601462

- Peptide Label:

isoform X1

- Sequence:

show sequence

MGIREFPGGAPRAKSIAVGMRRSPDVSPRRLSDISPQLRQLKYLVVDEAIKEDLKWSRSVEDLT
SGPVGLTSIEERILRITGYYGYQPWATSYKREERPREPPGPAEAQAPAGTEAGGRTSRHHWTCS
QEQLRKVFWGVAVVFCVCASWSGSTQLARLTFKTFDAPFTLTWFATNWNFLFFPLYYAGHVCKS
TEKQSVKQRYRECCRFFGDNGLTLKVFFTKAAPFGVLWTLTNYLYLHAIKKINATDVSVLFCCN
KSFVFLLSWIVLRDRFMGVRIVAAILAIAGIVMMTYADGFHSHSVIGIALVVGSASMSALYKVL
FKLLLGSAKFGEAALFLSILGVFNILFITCIPIILYFTRVEYWNSFDDIPWGNLCGFSILLLTF
NIVLNFGIAVTYPTLMSLGIVLSVPVNAVVDHYTSQIVFNGVRVIAIIIIGLGFLLLLLPEEWD
VWLIKLLTRLKVRKKEETAESSGDLGTGPQSRSRRARPSFAR

hide sequence

Ensembl Acc Id:

ENSRNOP00000066373 ⟸ ENSRNOT00000071655

RefSeq Acc Id:	XP_038954144 ⟸ XM_039098216
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000097395 ⟸ ENSRNOT00000103419

Ensembl Acc Id:

ENSRNOP00000097871 ⟸ ENSRNOT00000097403

RefSeq Acc Id:	XP_063134944 ⟸ XM_063278874
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6ATI2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134943 ⟸ XM_063278873
- Peptide Label:	isoform X2

Protein Domains

EamA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0RA35-F1-model_v2	AlphaFold	M0RA35	1-396	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589548	AgrOrtholog
BioCyc Gene	G2FUF-5180	BioCyc
Ensembl Genes	ENSRNOG00000049456	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000071655	ENTREZGENE
	ENSRNOT00000071655.4	UniProtKB/TrEMBL
	ENSRNOT00000097403	ENTREZGENE
	ENSRNOT00000097403.2	UniProtKB/TrEMBL
	ENSRNOT00000103419	ENTREZGENE
	ENSRNOT00000103419.2	UniProtKB/TrEMBL
InterPro	EamA_dom	UniProtKB/TrEMBL
	Solute_c_fam_35_mem_F3/F4	UniProtKB/TrEMBL
KEGG Report	rno:679321	UniProtKB/TrEMBL
NCBI Gene	679321	ENTREZGENE
PANTHER	PTHR19346	UniProtKB/TrEMBL
	THIAMINE TRANSPORTER SLC35F3-RELATED	UniProtKB/TrEMBL
Pfam	EamA	UniProtKB/TrEMBL
PhenoGen	Slc35f3	PhenoGen
RatGTEx	ENSRNOG00000049456	RatGTEx
Superfamily-SCOP	Multidrug resistance efflux transporter EmrE	UniProtKB/TrEMBL
UniProt	A0A8I6ASV5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATI2	ENTREZGENE, UniProtKB/TrEMBL
	A6KJ46	ENTREZGENE, UniProtKB/TrEMBL
	M0RA35	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-09	Slc35f3	solute carrier family 35, member F3	LOC679321	similar to solute carrier family 35, member F3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC679321	similar to solute carrier family 35, member F3			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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