B3glct (beta 3-glucosyltransferase) - Rat Genome Database

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Gene: B3glct (beta 3-glucosyltransferase) Rattus norvegicus
Analyze
Symbol: B3glct
Name: beta 3-glucosyltransferase
RGD ID: 1588723
Description: Predicted to enable glycosyltransferase activity. Predicted to act upstream of or within several processes, including cilium assembly; protein secretion; and roof of mouth development. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in Peters plus syndrome. Orthologous to human B3GLCT (beta 3-glucosyltransferase); INTERACTS WITH glyphosate; vinclozolin; (-)-demecolcine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B3galtl; B3galtl-ps1; beta 1,3-galactosyltransferase-like; beta 1,3-galactosyltransferase-like, pseudogene 1; beta-1,3-glucosyltransferase; LOC689765; similar to beta 3-glycosyltransferase-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,291,910 - 10,383,190 (-)NCBIGRCr8
mRatBN7.2125,255,521 - 5,346,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,255,740 - 5,346,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx125,940,750 - 6,024,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,564,180 - 6,647,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,591,696 - 5,675,262 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,403,118 - 6,476,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,403,940 - 6,473,321 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,485,545 - 8,576,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4125,695,579 - 5,706,396 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,034,312 - 7,117,929 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
B3glct
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81210,291,910 - 10,383,190 (-)NCBIGRCr8
mRatBN7.2125,255,521 - 5,346,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl125,255,740 - 5,346,810 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx125,940,750 - 6,024,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0126,564,180 - 6,647,748 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0125,591,696 - 5,675,262 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0126,403,118 - 6,476,010 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl126,403,940 - 6,473,321 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0128,485,545 - 8,576,783 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4125,695,579 - 5,706,396 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera127,034,312 - 7,117,929 (-)NCBICelera
Cytogenetic Map12p11NCBI
B3GLCT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381331,199,975 - 31,332,276 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1331,199,975 - 31,332,276 (+)EnsemblGRCh38hg38GRCh38
GRCh371331,774,112 - 31,906,413 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361330,672,112 - 30,804,413 (+)NCBINCBI36Build 36hg18NCBI36
Celera1312,841,849 - 12,974,020 (+)NCBICelera
Cytogenetic Map13q12.3NCBI
HuRef1312,600,539 - 12,717,555 (+)NCBIHuRef
CHM1_11331,741,727 - 31,874,040 (+)NCBICHM1_1
T2T-CHM13v2.01330,422,990 - 30,555,445 (+)NCBIT2T-CHM13v2.0
B3glct
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395149,601,565 - 149,686,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5149,601,695 - 149,686,064 (+)EnsemblGRCm39 Ensembl
GRCm385149,678,100 - 149,762,599 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5149,678,230 - 149,762,599 (+)EnsemblGRCm38mm10GRCm38
MGSCv375150,480,832 - 150,565,174 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365149,946,636 - 150,030,978 (+)NCBIMGSCv36mm8
Celera5147,678,917 - 147,763,679 (+)NCBICelera
Cytogenetic Map5G3NCBI
cM Map589.18NCBI
B3glct
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543114,507,184 - 14,633,351 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543114,507,184 - 14,621,376 (-)NCBIChiLan1.0ChiLan1.0
B3GLCT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21430,782,142 - 30,907,554 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11321,888,398 - 22,012,836 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01312,475,095 - 12,601,818 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11330,913,127 - 31,038,347 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1330,927,270 - 31,035,719 (+)Ensemblpanpan1.1panPan2
B3GLCT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,815,681 - 8,938,899 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,817,628 - 8,939,249 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha258,858,395 - 8,981,403 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0258,920,118 - 9,043,371 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,910,525 - 9,043,736 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1258,817,894 - 8,942,955 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0258,825,921 - 8,950,637 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,869,284 - 8,992,465 (-)NCBIUU_Cfam_GSD_1.0
B3glct
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945169,960,358 - 170,042,161 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647225,942,662 - 26,006,288 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647225,909,994 - 25,991,800 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B3GLCT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl117,792,368 - 7,907,049 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1117,792,160 - 7,907,052 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2117,763,470 - 7,875,165 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B3GLCT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1310,058,041 - 10,178,996 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl310,059,196 - 10,179,037 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605734,188,163 - 34,309,750 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B3glct
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247766,825,204 - 6,922,791 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247766,823,388 - 6,954,114 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B3glct
697 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
724526Uae3Urinary albumin excretion QTL 34.90.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)12390696910373166Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7387292Kidm42Kidney mass QTL 423.030.0004kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)12136247923Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
7243862Mcs30Mammary carcinoma susceptibility QTL 308.62mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)127977298525593Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1300174Bw15Body weight QTL 152.93body mass (VT:0001259)body weight loss (CMO:0001399)1219318387Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat

Markers in Region
RH135180  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2125,258,321 - 5,258,515 (-)MAPPERmRatBN7.2
Rnor_6.0126,473,016 - 6,473,209NCBIRnor6.0
Rnor_5.0128,573,789 - 8,573,982UniSTSRnor5.0
RGSC_v3.4125,667,595 - 5,667,788UniSTSRGSC3.4
Celera127,037,113 - 7,037,306UniSTS
Cytogenetic Map12p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000083484   ⟹   ENSRNOP00000069223
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,257,150 - 5,328,831 (-)Ensembl
Rnor_6.0 Ensembl126,403,940 - 6,473,321 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000110003   ⟹   ENSRNOP00000084499
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,257,150 - 5,324,259 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116254   ⟹   ENSRNOP00000092873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl125,255,740 - 5,346,810 (-)Ensembl
RefSeq Acc Id: NM_001398955   ⟹   NP_001385884
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81210,291,910 - 10,383,190 (-)NCBI
mRatBN7.2125,255,521 - 5,346,807 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001385884 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069223.2
  ENSRNOP00000084499.1
  ENSRNOP00000092873.1
Ensembl Acc Id: ENSRNOP00000069223   ⟸   ENSRNOT00000083484
Ensembl Acc Id: ENSRNOP00000084499   ⟸   ENSRNOT00000110003
Ensembl Acc Id: ENSRNOP00000092873   ⟸   ENSRNOT00000116254
RefSeq Acc Id: NP_001385884   ⟸   NM_001398955
- Peptide Label: precursor
Protein Domains
Fringe-like glycosyltransferase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUT7-F1-model_v2 AlphaFold A0A0G2JUT7 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1588723 AgrOrtholog
BioCyc Gene G2FUF-20213 BioCyc
Ensembl Genes ENSRNOG00000061346 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000083484.2 UniProtKB/TrEMBL
  ENSRNOT00000110003.1 UniProtKB/TrEMBL
  ENSRNOT00000116254.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Fringe-like UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene 689765 ENTREZGENE
PANTHER BETA-1,3-GLUCOSYLTRANSFERASE UniProtKB/TrEMBL
  FRINGE-RELATED UniProtKB/TrEMBL
Pfam Fringe UniProtKB/TrEMBL
PhenoGen B3glct PhenoGen
RatGTEx ENSRNOG00000061346 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A0G2JUT7_RAT UniProtKB/TrEMBL
  A0A8I6GBW9_RAT UniProtKB/TrEMBL
  A0A8I6GKE1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-06-10 B3glct  beta 3-glucosyltransferase  B3galtl  beta 1,3-galactosyltransferase-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-05 B3galtl  beta 1,3-galactosyltransferase-like  B3galtl-ps1  beta 1,3-galactosyltransferase-like, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-07 B3galtl-ps1  beta 1,3-galactosyltransferase-like, pseudogene 1  B3galtl  beta 1,3-galactosyltransferase-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 B3galtl  beta 1,3-galactosyltransferase-like  LOC689765  similar to beta 3-glycosyltransferase-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC689765  similar to beta 3-glycosyltransferase-like      Symbol and Name status set to provisional 70820 PROVISIONAL