Timm50 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 1 | 92,702,437 - 92,710,311 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 1 | 92,702,437 - 92,710,311 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | 1 | 83,574,872 - 83,582,748 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 83,556,757 - 83,582,793 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 1 | 88,987,154 - 88,995,023 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 97,445,500 - 97,453,366 (-) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 90,743,014 - 90,750,883 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Dahl_SR_JrHsd | 1 | 91,319,900 - 91,327,781 (-) | NCBI | | Dahl_SR_JrHsd | | | Lyon_Normotensive | 1 | 96,459,195 - 96,467,069 (-) | NCBI | | Lyon_Normotensive | | | Lyon_Hypertensive | 1 | 92,993,488 - 93,001,369 (-) | NCBI | | Lyon_Hypertensive | | | F344_StmMcwi | 1 | 91,447,181 - 91,455,055 (-) | NCBI | | F344_StmMcwi | | | Rnor_6.0 | 1 | 85,470,810 - 85,480,813 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 85,470,831 - 85,480,407 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 86,684,416 - 86,691,956 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 1 | 83,399,403 - 83,400,789 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 1 | 77,973,840 - 77,981,578 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q21 | NCBI | | | | |
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TIMM50 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 19 | 39,480,838 - 39,493,779 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 19 | 39,479,795 - 39,493,785 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 19 | 39,971,478 - 39,984,419 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 19 | 44,662,892 - 44,673,368 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 19 | 36,772,761 - 36,783,237 (+) | NCBI | | Celera | | | Cytogenetic Map | 19 | q13.2 | NCBI | | | | | HuRef | 19 | 36,417,634 - 36,428,111 (+) | NCBI | | HuRef | | | CHM1_1 | 19 | 39,971,692 - 39,982,162 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 19 | 42,285,093 - 42,298,036 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Timm50 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 7 | 28,004,947 - 28,011,517 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 7 | 28,004,941 - 28,011,497 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 7 | 28,305,516 - 28,312,046 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 7 | 28,305,516 - 28,312,072 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 7 | 29,090,845 - 29,097,065 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 7 | 28,014,586 - 28,020,806 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 7 | 22,867,467 - 22,873,687 (-) | NCBI | | Celera | | | Cytogenetic Map | 7 | A3 | NCBI | | | | | cM Map | 7 | 16.67 | NCBI | | | | |
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Timm50 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955468 | 83,679 - 95,113 (-) | Ensembl | | | | | ChiLan1.0 | NW_004955468 | 85,681 - 94,300 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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TIMM50 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 20 | 45,776,203 - 45,785,611 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 19 | 47,646,767 - 47,656,349 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 19 | 36,578,969 - 36,589,598 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 19 | 45,126,266 - 45,136,005 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 19 | 45,126,266 - 45,135,984 (+) | Ensembl | | | panPan2 | panpan1.1 |
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TIMM50 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 1 | 113,749,778 - 113,758,480 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 113,749,994 - 113,757,930 (-) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 113,153,760 - 113,161,736 (-) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 114,350,925 - 114,358,875 (-) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 114,349,312 - 114,358,848 (-) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 1 | 113,909,979 - 113,917,938 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 113,542,983 - 113,550,948 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 114,537,383 - 114,545,353 (-) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Timm50 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | NW_024409349 | 13,882,080 - 13,889,966 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936661 | 2,310,125 - 2,318,258 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936661 | 2,310,169 - 2,318,035 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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TIMM50 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 6 | 48,126,991 - 48,139,357 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 6 | 48,126,470 - 48,134,664 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 6 | 43,825,768 - 43,834,464 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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TIMM50 (Chlorocebus sabaeus - green monkey) |
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Timm50 (Heterocephalus glaber - naked mole-rat) |
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Timm50 (Rattus rattus - black rat) |
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