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Gene: C8h19orf38 (similar to human chromosome 19 open reading frame 38) Rattus norvegicus

Analyze

Symbol:

C8h19orf38

Name:

similar to human chromosome 19 open reading frame 38

RGD ID:

1587445

Description:

Predicted to be located in membrane. Orthologous to human C19orf38 (chromosome 19 open reading frame 38); INTERACTS WITH bisphenol A; 1,2-dichloroethane (ortholog); 17beta-estradiol (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC691141; LOC691141; uncharacterized protein LOC691141

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,337,629 - 28,371,806 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	28,354,725 - 28,371,804 (+)	Ensembl				GRCr8
mRatBN7.2	8	20,061,494 - 20,095,705 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	20,078,639 - 20,095,696 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	24,110,769 - 24,127,643 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,408,608 - 22,423,195 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,308,271 - 20,325,328 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,557,769 - 22,576,163 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,559,098 - 22,576,154 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	22,611,882 - 22,630,272 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	20,629,814 - 20,648,525 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	21,469,788 - 21,486,866 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-sulfonyldiphenol (ISO)

all-trans-retinoic acid (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

dimethylarsinic acid (ISO)

methylarsonic acid (ISO)

serpentine asbestos (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

C8h19orf38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	28,337,629 - 28,371,806 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	28,354,725 - 28,371,804 (+)	Ensembl				GRCr8
mRatBN7.2	8	20,061,494 - 20,095,705 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	20,078,639 - 20,095,696 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	24,110,769 - 24,127,643 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	22,408,608 - 22,423,195 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	20,308,271 - 20,325,328 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	22,557,769 - 22,576,163 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	22,559,098 - 22,576,154 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	22,611,882 - 22,630,272 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	20,629,814 - 20,648,525 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	21,469,788 - 21,486,866 (+)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

C19orf38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	10,836,685 - 10,869,790 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	10,836,567 - 10,869,791 (+)	Ensembl			hg38	GRCh38
GRCh37	19	10,959,091 - 10,980,466 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	10,820,089 - 10,841,473 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	10,853,950 - 10,875,203 (+)	NCBI		Celera
Cytogenetic Map	19	p13.2	NCBI
HuRef	19	10,537,179 - 10,558,424 (+)	NCBI		HuRef
CHM1_1	19	10,960,345 - 10,981,617 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	10,963,557 - 10,996,802 (+)	NCBI		T2T-CHM13v2.0

AB124611
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	21,437,410 - 21,456,629 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	21,437,472 - 21,456,629 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	21,526,114 - 21,545,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	21,526,176 - 21,545,333 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	21,330,721 - 21,349,237 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	21,276,679 - 21,295,195 (+)	NCBI		MGSCv36	mm8
Celera	9	18,794,853 - 18,813,749 (+)	NCBI		Celera
Cytogenetic Map	9	A3	NCBI
cM Map	9	7.82	NCBI

LOC102014685
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955495	1,945,560 - 1,956,990 (+)	Ensembl
ChiLan1.0	NW_004955495	1,945,560 - 1,956,990 (+)	NCBI	ChiLan1.0	ChiLan1.0

C20H19orf38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	15,756,741 - 15,789,717 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	14,755,329 - 14,788,322 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	10,390,158 - 10,423,117 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	11,112,020 - 11,143,060 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	11,123,539 - 11,142,641 (+)	Ensembl			panPan2	panpan1.1

C20H19orf38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	50,374,159 - 50,395,695 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	50,373,622 - 50,386,594 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	50,247,233 - 50,259,550 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	50,896,216 - 50,908,532 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	50,895,676 - 50,909,308 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	50,105,295 - 50,117,390 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	50,532,806 - 50,544,873 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	50,774,238 - 50,786,379 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH19orf38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	209,282,566 - 209,304,942 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936659	1,054,045 - 1,072,139 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936659	1,059,059 - 1,072,148 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C2H19orf38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	69,585,883 - 69,600,756 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	69,584,550 - 69,600,760 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	70,020,195 - 70,035,676 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C6H19orf38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	9,855,101 - 9,865,266 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666074	10,080,496 - 10,119,327 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH19orf38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624828	2,815,991 - 2,832,469 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624828	2,807,144 - 2,831,583 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C8H19orf38
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	17,797,966 - 17,815,068 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C8h19orf38
146 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	65
Count of miRNA genes:	59
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000041091
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
9590084	Insglur5	Insulin/glucose ratio QTL 5	18.54	0.001	blood insulin amount (VT:0001560)	calculated plasma insulin level (CMO:0002170)	8	1	32882639	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

RH135268

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	20,095,479 - 20,095,664 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	22,575,938 - 22,576,122	NCBI	Rnor6.0
Rnor_5.0	8	22,630,047 - 22,630,231	UniSTS	Rnor5.0
RGSC_v3.4	8	20,648,309 - 20,648,493	UniSTS	RGSC3.4
Celera	8	21,486,650 - 21,486,834	UniSTS
RH 3.4 Map	8	205.8	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	162	91	90	59	92	59	6	355	191	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008765985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082182	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063266179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC120728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC130555	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473993	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230556	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041091 ⟹ ENSRNOP00000041436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	28,354,748 - 28,371,804 (+)	Ensembl
mRatBN7.2 Ensembl	8	20,078,639 - 20,095,696 (+)	Ensembl
Rnor_6.0 Ensembl	8	22,559,098 - 22,576,154 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099602 ⟹ ENSRNOP00000081290

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	28,354,725 - 28,371,804 (+)	Ensembl
mRatBN7.2 Ensembl	8	20,078,664 - 20,095,694 (+)	Ensembl

RefSeq Acc Id:

NM_001109624 ⟹ NP_001103094

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,354,748 - 28,371,804 (+)	NCBI
mRatBN7.2	8	20,078,639 - 20,095,696 (+)	NCBI
Rnor_6.0	8	22,559,098 - 22,576,154 (+)	NCBI
Rnor_5.0	8	22,611,882 - 22,630,272 (+)	NCBI
RGSC_v3.4	8	20,629,814 - 20,648,525 (+)	RGD
Celera	8	21,469,788 - 21,486,866 (+)	RGD

Sequence:

show sequence

CAACACTCACTTCTCCTTTCTCCACTGTGGTCTCGGGCTGGCAGGGAGCCCCAGATCCCCGTGG
CCTCGGCCAGCTTTCCCAGACGTACATGGGAGGAGAGATGCTTTCCCAGACGTACATGGGAGGA
GAGATGCCCTGGACCATTCTGCTGTTTGCATCTGGCTCCTTGGCCATCCCTGCACCGTCTATCT
TCCTGGTGCCCCCCTTCCCAAGCAGCCGTGAGGATCCCATCTACCTCTCATGCACAGCCCCCAA
GGACATCCTCGGGGCCAACTTCACCCTGTTCCGAGGGGGAGAGGCGGTCCAGCTCCTACAAGCC
CCCTCAGATCAGCACAGTGTCACATTCAATGTGACTGGTAGTGGCAGTGGTGGCAGCAATGAGG
CTGCAGGGGGCAACTTCCGCTGTCAGTATGGTGTGCTGGGAGAGCACAGTGAGCCCCAGCTGTC
CGACTTCAGCCAGGAGGTGCAGGTCTCCTTCCCAGTCCCCACCTGGATCCTGGCGCTCTCCCTG
AGCCTGGCTGGCGCTGTCCTCCTCTCAGGGCTGGTGGTCATCGCAGTGCTGGTGAGGAAAGCTA
AGGCCAAAAACTTACAGATGCAGAGAGAGCGTGAATCCTGCTGGGCTCAGATCAACTTCACCAA
CACAGACATGTCCTTTGATAACTCTCTGTTTGCCATCTCCACGAAAATGACTCAAGAAGACTCA
ATGGTAACCCTGGACTCAGGGCCTCGGAAGAGGCCTACCTCTGCATCGTTCTCTCCAGAGCCCC
CTGAGTTCAGCACTTTCCGGGCCTGCCAATGAGGCTGAAGAATGAGGACCCCTTTATCCAGTTC
TTTCCTTCCCACAGCCCCAGGCTGCAGAAGCTGGCCATCTGTCTGGAGACTCGGCAGTAGGGAG
GAGTCAAGCCACAGCTTTCTTATGGAACAACTGGCCAAAGGAAGGAGACACCTGGTGTTGTGAC
CTTCCTCATAGAAGACAATTAGTTGGGGTATCAGCCTAGGGGCAAGACAGAAAGCCAGAAGCCT
CTGTAAAGAAGGGTCACTCTTGAATCAGGACACCCAGCCAGGCCTAAGAGGTTACATTCTGTAC
GGACTTTCCTGTGGTTCCCCAACTGCAATTGACTTCCAGACTGGGTGTTTTATTTGGGGGAGAG
ATGTGTATATTTTTGTTGCTGTTGTTTTCAGATAAGGTCTCACTGTGTAGTCCTGCCTGAACTG
GAAGTTACTGTGTAGACCAGGCTGGCCCACAATAGAGATCCACCTGCCTCTGCCTCCAGAGTGT
TGGGATTAAAGTACCTGCCAC

hide sequence

RefSeq Acc Id:

XM_039082179 ⟹ XP_038938107

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,344,710 - 28,371,806 (+)	NCBI
mRatBN7.2	8	20,068,598 - 20,095,705 (+)	NCBI

RefSeq Acc Id:

XM_039082180 ⟹ XP_038938108

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,337,629 - 28,371,806 (+)	NCBI
mRatBN7.2	8	20,061,494 - 20,095,705 (+)	NCBI

RefSeq Acc Id:

XM_039082182 ⟹ XP_038938110

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,337,629 - 28,371,349 (+)	NCBI
mRatBN7.2	8	20,061,494 - 20,095,705 (+)	NCBI

RefSeq Acc Id:

XM_039082183 ⟹ XP_038938111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,344,710 - 28,371,806 (+)	NCBI
mRatBN7.2	8	20,068,598 - 20,095,705 (+)	NCBI

RefSeq Acc Id:

XM_063266176 ⟹ XP_063122246

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,337,629 - 28,371,806 (+)	NCBI

RefSeq Acc Id:

XM_063266177 ⟹ XP_063122247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,354,792 - 28,371,806 (+)	NCBI

RefSeq Acc Id:

XM_063266178 ⟹ XP_063122248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,337,629 - 28,371,806 (+)	NCBI

RefSeq Acc Id:

XM_063266179 ⟹ XP_063122249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	28,354,792 - 28,371,806 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001103094	(Get FASTA)	NCBI Sequence Viewer
	XP_038938107	(Get FASTA)	NCBI Sequence Viewer
	XP_038938108	(Get FASTA)	NCBI Sequence Viewer
	XP_038938110	(Get FASTA)	NCBI Sequence Viewer
	XP_038938111	(Get FASTA)	NCBI Sequence Viewer
	XP_063122246	(Get FASTA)	NCBI Sequence Viewer
	XP_063122247	(Get FASTA)	NCBI Sequence Viewer
	XP_063122248	(Get FASTA)	NCBI Sequence Viewer
	XP_063122249	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78287	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000041436
	ENSRNOP00000041436.2
	ENSRNOP00000081290
	ENSRNOP00000081290.1

RefSeq Acc Id:

NP_001103094 ⟸ NM_001109624

- UniProtKB:

D3ZMI7 (UniProtKB/TrEMBL), A6JNS9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MGGEMLSQTYMGGEMPWTILLFASGSLAIPAPSIFLVPPFPSSREDPIYLSCTAPKDILGANFT
LFRGGEAVQLLQAPSDQHSVTFNVTGSGSGGSNEAAGGNFRCQYGVLGEHSEPQLSDFSQEVQV
SFPVPTWILALSLSLAGAVLLSGLVVIAVLVRKAKAKNLQMQRERESCWAQINFTNTDMSFDNS
LFAISTKMTQEDSMVTLDSGPRKRPTSASFSPEPPEFSTFRACQ

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Ensembl Acc Id:

ENSRNOP00000041436 ⟸ ENSRNOT00000041091

RefSeq Acc Id:	XP_038938110 ⟸ XM_039082182
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038938108 ⟸ XM_039082180
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZRB8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938107 ⟸ XM_039082179
- Peptide Label:	isoform X1
- UniProtKB:	D3ZMI7 (UniProtKB/TrEMBL), A6JNS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038938111 ⟸ XM_039082183
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000081290 ⟸ ENSRNOT00000099602

RefSeq Acc Id:	XP_063122246 ⟸ XM_063266176
- Peptide Label:	isoform X1
- UniProtKB:	A6JNS9 (UniProtKB/TrEMBL), D3ZMI7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063122248 ⟸ XM_063266178
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063122247 ⟸ XM_063266177
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063122249 ⟸ XM_063266179
- Peptide Label:	isoform X6

Protein Domains

C19orf38 Ig

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZMI7-F1-model_v2	AlphaFold	D3ZMI7	1-236	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695782

Promoter ID:

EPDNEW_R6307

Type:

single initiation site

Name:

LOC691141_1

Description:

hypothetical protein LOC691141

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	22,559,121 - 22,559,181	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1587445	AgrOrtholog
BioCyc Gene	G2FUF-31417	BioCyc
Ensembl Genes	ENSRNOG00000033256	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041091	ENTREZGENE
	ENSRNOT00000041091.4	UniProtKB/TrEMBL
	ENSRNOT00000099602	ENTREZGENE
	ENSRNOT00000099602.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	C19orf38_Ig	UniProtKB/TrEMBL
	HIDE1	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
KEGG Report	rno:691141	UniProtKB/TrEMBL
NCBI Gene	691141	ENTREZGENE
PANTHER	PROTEIN HIDE1	UniProtKB/TrEMBL
	PTHR36859	UniProtKB/TrEMBL
Pfam	Ig_C19orf38	UniProtKB/TrEMBL
PhenoGen	C8h19orf38	PhenoGen
RatGTEx	ENSRNOG00000033256	RatGTEx
UniProt	A0A8I5ZRB8	ENTREZGENE, UniProtKB/TrEMBL
	A6JNS9	ENTREZGENE, UniProtKB/TrEMBL
	D3ZMI7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	C8h19orf38	similar to human chromosome 19 open reading frame 38	LOC691141	hypothetical protein LOC691141	Symbol and Name Changed	1299863	APPROVED
2008-01-09	LOC691141	hypothetical protein LOC691141	LOC687186	hypothetical protein LOC687186	Data merged from RGD:1588900	1643240	APPROVED
2006-11-19	LOC691141	hypothetical protein LOC691141			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC687186	hypothetical protein LOC687186			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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