C20H19orf38 (chromosome 20 C19orf38 homolog) - Rat Genome Database

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Gene: C20H19orf38 (chromosome 20 C19orf38 homolog) Canis lupus familiaris
Analyze
Symbol: C20H19orf38
Name: chromosome 20 C19orf38 homolog (Ensembl:chromosome 19 open reading frame 38)
RGD ID: 12295917
Description: ASSOCIATED WITH alpha-mannosidosis (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); episodic ataxia type 2 (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome 20 open reading frame, human C19orf38; protein HIDE1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,374,159 - 50,395,695 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,373,622 - 50,386,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,247,233 - 50,259,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,896,216 - 50,908,532 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,895,676 - 50,909,308 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,105,295 - 50,117,390 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,532,806 - 50,544,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,774,238 - 50,786,379 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
C20H19orf38
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12050,374,159 - 50,395,695 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2050,373,622 - 50,386,594 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2050,247,233 - 50,259,550 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,896,216 - 50,908,532 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,895,676 - 50,909,308 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12050,105,295 - 50,117,390 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,532,806 - 50,544,873 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,774,238 - 50,786,379 (-)NCBIUU_Cfam_GSD_1.0
C19orf38
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381910,836,685 - 10,869,790 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1910,836,575 - 10,869,790 (+)EnsemblGRCh38hg38GRCh38
GRCh371910,959,091 - 10,980,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361910,820,089 - 10,841,473 (+)NCBINCBI36Build 36hg18NCBI36
Celera1910,853,950 - 10,875,203 (+)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1910,537,179 - 10,558,424 (+)NCBIHuRef
CHM1_11910,960,345 - 10,981,617 (+)NCBICHM1_1
T2T-CHM13v2.01910,963,557 - 10,996,802 (+)NCBIT2T-CHM13v2.0
AB124611
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,437,410 - 21,456,629 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,437,472 - 21,456,629 (+)EnsemblGRCm39 Ensembl
GRCm38921,526,114 - 21,545,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,526,176 - 21,545,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv37921,330,721 - 21,349,237 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,276,679 - 21,295,195 (+)NCBIMGSCv36mm8
Celera918,794,853 - 18,813,749 (+)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.82NCBI
C8h19orf38
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,337,629 - 28,371,806 (+)NCBIGRCr8
mRatBN7.2820,061,494 - 20,095,705 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,078,639 - 20,095,696 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,110,769 - 24,127,643 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,408,608 - 22,423,195 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,308,271 - 20,325,328 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,557,769 - 22,576,163 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,559,098 - 22,576,154 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0822,611,882 - 22,630,272 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4820,629,814 - 20,648,525 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera821,469,788 - 21,486,866 (+)NCBICelera
Cytogenetic Map8q13NCBI
LOC102014685
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554951,945,560 - 1,956,990 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554951,945,560 - 1,956,990 (+)NCBIChiLan1.0ChiLan1.0
C20H19orf38
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22015,756,741 - 15,789,717 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11914,755,329 - 14,788,322 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,390,158 - 10,423,117 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,112,020 - 11,143,060 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,123,539 - 11,142,641 (+)Ensemblpanpan1.1panPan2
CUNH19orf38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118209,282,566 - 209,304,942 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,054,045 - 1,072,139 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,059,059 - 1,072,148 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H19orf38
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl269,585,883 - 69,600,756 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1269,584,550 - 69,600,760 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,020,195 - 70,035,676 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf38
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.169,855,101 - 9,865,266 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607410,080,496 - 10,119,327 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH19orf38
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248282,815,991 - 2,832,469 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248282,807,144 - 2,831,583 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C20H19orf38
306 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1
Low 5 1 4
Below cutoff 5 5 22 6 6 5 6 12 8 6 6

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003432777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407054 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022407055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038428610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038455892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038504249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038567276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038631427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000027948   ⟹   ENSCAFP00000025991
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,373,622 - 50,386,594 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000069941   ⟹   ENSCAFP00000048714
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2050,373,622 - 50,385,311 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845040468   ⟹   ENSCAFP00845031686
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2050,895,676 - 50,909,308 (-)Ensembl
RefSeq Acc Id: XM_003432777   ⟹   XP_003432825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,374,159 - 50,386,718 (-)NCBI
Dog10K_Boxer_Tasha2050,247,233 - 50,259,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022407055   ⟹   XP_022262763
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12050,374,159 - 50,386,719 (-)NCBI
Dog10K_Boxer_Tasha2050,247,233 - 50,259,549 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038428608   ⟹   XP_038284536
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,896,216 - 50,908,532 (-)NCBI
RefSeq Acc Id: XM_038428609   ⟹   XP_038284537
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,904,812 - 50,908,532 (-)NCBI
RefSeq Acc Id: XM_038428610   ⟹   XP_038284538
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02050,896,216 - 50,908,532 (-)NCBI
RefSeq Acc Id: XM_038455892   ⟹   XP_038311820
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2050,255,829 - 50,259,550 (-)NCBI
RefSeq Acc Id: XM_038504247   ⟹   XP_038360175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,105,295 - 50,117,390 (-)NCBI
RefSeq Acc Id: XM_038504248   ⟹   XP_038360176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,113,667 - 50,117,390 (-)NCBI
RefSeq Acc Id: XM_038504249   ⟹   XP_038360177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12050,105,295 - 50,117,390 (-)NCBI
RefSeq Acc Id: XM_038567274   ⟹   XP_038423202
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,774,238 - 50,786,379 (-)NCBI
RefSeq Acc Id: XM_038567275   ⟹   XP_038423203
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,782,659 - 50,786,379 (-)NCBI
RefSeq Acc Id: XM_038567276   ⟹   XP_038423204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02050,774,238 - 50,786,379 (-)NCBI
RefSeq Acc Id: XM_038631425   ⟹   XP_038487353
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,532,806 - 50,544,873 (-)NCBI
RefSeq Acc Id: XM_038631426   ⟹   XP_038487354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,541,152 - 50,544,873 (-)NCBI
RefSeq Acc Id: XM_038631427   ⟹   XP_038487355
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02050,532,806 - 50,544,873 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_003432825   ⟸   XM_003432777
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NQ31 (UniProtKB/TrEMBL),   A0A8I3PLN6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022262763   ⟸   XM_022407055
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSCAFP00000048714   ⟸   ENSCAFT00000069941
RefSeq Acc Id: ENSCAFP00000025991   ⟸   ENSCAFT00000027948
RefSeq Acc Id: XP_038360177   ⟸   XM_038504249
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038360175   ⟸   XM_038504247
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038360176   ⟸   XM_038504248
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038487355   ⟸   XM_038631427
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038487353   ⟸   XM_038631425
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038487354   ⟸   XM_038631426
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038284538   ⟸   XM_038428610
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038284536   ⟸   XM_038428608
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NQ31 (UniProtKB/TrEMBL),   A0A8I3PLN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038284537   ⟸   XM_038428609
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038311820   ⟸   XM_038455892
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038423204   ⟸   XM_038567276
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038423202   ⟸   XM_038567274
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NQ31 (UniProtKB/TrEMBL),   A0A8I3PLN6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423203   ⟸   XM_038567275
- Peptide Label: isoform X2
RefSeq Acc Id: ENSCAFP00845031686   ⟸   ENSCAFT00845040468
Protein Domains
C19orf38 Ig


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017628 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030017330 UniProtKB/TrEMBL
  ENSCAFG00040017654 UniProtKB/TrEMBL
  ENSCAFG00845022938 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027948.5 UniProtKB/TrEMBL
  ENSCAFT00030031967.1 UniProtKB/TrEMBL
  ENSCAFT00040032678.1 UniProtKB/TrEMBL
  ENSCAFT00845040468 ENTREZGENE
  ENSCAFT00845040468.1 UniProtKB/TrEMBL
InterPro C19orf38_Ig UniProtKB/TrEMBL
  HIDE1 UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
KEGG Report cfa:100682987 UniProtKB/TrEMBL
NCBI Gene C20H19orf38 ENTREZGENE
PANTHER PROTEIN HIDE1 UniProtKB/TrEMBL
  PTHR36859 UniProtKB/TrEMBL
Pfam Ig_C19orf38 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8C0NQ31 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PLN6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:52514 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-09-12 C20H19orf38  chromosome 20 C19orf38 homolog    chromosome 20 open reading frame, human C19orf38  Symbol and/or name change 5135510 APPROVED