C19h16orf46 (similar to human chromosome 16 open reading frame 46)

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Gene: C19h16orf46 (similar to human chromosome 16 open reading frame 46) Rattus norvegicus

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Symbol:

C19h16orf46

Name:

similar to human chromosome 16 open reading frame 46

RGD ID:

1586501

Description:

Predicted to be located in cytosol and nucleoplasm. Orthologous to human C16orf46 (chromosome 16 open reading frame 46); INTERACTS WITH (+)-catechin (ortholog); 4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ortholog); all-trans-retinoic acid (ortholog).

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC687399; LOC687399; uncharacterized protein C16orf46 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,931,114 - 61,941,517 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	61,931,116 - 61,941,517 (-)	Ensembl				GRCr8
mRatBN7.2	19	45,017,499 - 45,033,453 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	45,022,280 - 45,032,683 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	51,832,036 - 51,842,452 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,485,051 - 52,495,466 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,729,290 - 54,739,705 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,508,321 - 49,518,721 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,508,288 - 49,518,721 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	60,299,626 - 60,309,967 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	19	44,295,476 - 44,305,865 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

4-\{[(5,5,8,8-tetramethyl-5,6,7,8-tetrahydronaphthalen-2-yl)carbonyl]amino\}benzoic acid (ISO)

all-trans-retinoic acid (ISO)

benzo[e]pyrene (ISO)

cordycepin (ISO)

fulvestrant (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

paracetamol (ISO)

potassium chromate (ISO)

sodium dodecyl sulfate (ISO)

urethane (ISO)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15489334

Genomics

Comparative Map Data

C19h16orf46
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	61,931,114 - 61,941,517 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	19	61,931,116 - 61,941,517 (-)	Ensembl				GRCr8
mRatBN7.2	19	45,017,499 - 45,033,453 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	45,022,280 - 45,032,683 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	19	51,832,036 - 51,842,452 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	19	52,485,051 - 52,495,466 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	19	54,729,290 - 54,739,705 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	19	49,508,321 - 49,518,721 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	49,508,288 - 49,518,721 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	19	60,299,626 - 60,309,967 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	19	44,295,476 - 44,305,865 (-)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

C16orf46
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	81,053,497 - 81,077,238 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	81,053,497 - 81,077,267 (-)	Ensembl			hg38	GRCh38
GRCh37	16	81,087,102 - 81,110,843 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	79,644,603 - 79,668,373 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	16	79,652,092 - 79,668,305	NCBI
Celera	16	65,385,500 - 65,409,274 (-)	NCBI		Celera
Cytogenetic Map	16	q23.2	NCBI
HuRef	16	66,843,908 - 66,867,687 (-)	NCBI		HuRef
CHM1_1	16	82,498,474 - 82,522,234 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	87,115,033 - 87,138,779 (-)	NCBI		T2T-CHM13v2.0

1700030J22Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	117,696,333 - 117,705,741 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	117,696,333 - 117,705,698 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	116,969,594 - 116,978,959 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	116,969,594 - 116,978,959 (-)	Ensembl			mm10	GRCm38
MGSCv37	8	119,493,499 - 119,502,843 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	119,855,576 - 119,864,920 (-)	NCBI		MGSCv36	mm8
Celera	8	121,188,996 - 121,198,332 (-)	NCBI		Celera
Cytogenetic Map	8	E1	NCBI
cM Map	8	63.41	NCBI

LOC102030116
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955522	3,845,029 - 3,853,167 (-)	NCBI	ChiLan1.0	ChiLan1.0

C18H16orf46
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	90,805,494 - 90,829,620 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	96,718,168 - 96,738,099 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	61,659,749 - 61,684,534 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	81,094,781 - 81,111,048 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	81,088,460 - 81,098,032 (-)	Ensembl			panPan2	panpan1.1

C5H16orf46
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	70,762,353 - 70,775,341 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	70,765,736 - 70,774,052 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	70,711,103 - 70,724,298 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	71,067,399 - 71,080,383 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	71,070,781 - 71,079,099 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	71,009,677 - 71,022,859 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	70,844,889 - 70,858,073 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	71,322,416 - 71,335,600 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH16orf46
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	30,844,331 - 30,877,268 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936475	28,710,792 - 28,744,811 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936475	28,712,249 - 28,744,784 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H16orf46
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	7,189,556 - 7,207,357 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	7,189,026 - 7,208,669 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C5H16orf46
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	66,509,242 - 66,531,699 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	66,509,298 - 66,519,426 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666047	9,304,104 - 9,326,227 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH16orf46
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624746	6,285,316 - 6,288,211 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624746	6,281,954 - 6,289,142 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C17H16orf46
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	17	36,606,008 - 36,616,458 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	42
Interacting mature miRNAs:	42
Transcripts:	ENSRNOT00000071332
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61447	Tcas1	Tongue tumor susceptibility QTL 1	6.08		tongue integrity trait (VT:0010553)	squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)	19	19220689	64220689	Rat
631840	Niddm38	Non-insulin dependent diabetes mellitus QTL 38	3.86		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	19	10329076	74246245	Rat
724546	Kidm3	Kidney mass QTL 3	3.1		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	19	46226778	74246245	Rat
7411549	Bw130	Body weight QTL 130	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	19	32365311	74246245	Rat
1331737	Uae29	Urinary albumin excretion QTL 29	5.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	36289	74246245	Rat
724518	Uae19	Urinary albumin excretion QTL 19	5.5		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	24093973	69093973	Rat
61423	Cia14	Collagen induced arthritis QTL 14	3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	19	10833618	74246245	Rat
2303628	Vencon9	Ventilatory control QTL 9		0.005	respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	19	23188586	68188586	Rat
2313395	Anxrr26	Anxiety related response QTL 26			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	19	44385134	74246245	Rat
1578764	Stresp19	Stress response QTL 19	3.6	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	19	32539615	74246245	Rat
5135224	Leukc1	Leukocyte quantity QTL 1			eosinophil quantity (VT:0002602)	blood eosinophil count (CMO:0000033)	19	61249161	74246245	Rat
1331788	Rf45	Renal function QTL 45	2.818		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	19	31777888	74246245	Rat
1554318	Bmd5	Bone mineral density QTL 5	12.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	19	23188586	68188586	Rat
2317848	Alcrsp21	Alcohol response QTL 21	1.899999976158142	0.05	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	19	20109306	65109306	Rat
7247442	Uae39	Urinary albumin excretion QTL 39			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	19	2194317	74246245	Rat
1549835	Tcas7	Tongue tumor susceptibility QTL 7		0.001	tongue integrity trait (VT:0010553)	squamous cell carcinoma of the head and neck tumor number (CMO:0001876)	19	41722546	74246245	Rat
724566	Uae12	Urinary albumin excretion QTL 12	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	19	2194317	74246245	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	66	164	91	90	59	88	59	6	350	186	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001101015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473972	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000019	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000071332 ⟹ ENSRNOP00000067219

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	19	61,931,116 - 61,941,517 (-)	Ensembl
mRatBN7.2 Ensembl	19	45,022,280 - 45,032,683 (-)	Ensembl
Rnor_6.0 Ensembl	19	49,508,594 - 49,518,721 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000079969 ⟹ ENSRNOP00000074763

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	49,508,288 - 49,510,937 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082929 ⟹ ENSRNOP00000075426

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	19	49,508,353 - 49,510,901 (-)	Ensembl

RefSeq Acc Id:

NM_001101015 ⟹ NP_001094485

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	19	61,931,114 - 61,941,517 (-)	NCBI
mRatBN7.2	19	45,022,277 - 45,032,680 (-)	NCBI
Rnor_6.0	19	49,508,321 - 49,518,721 (-)	NCBI
Rnor_5.0	19	60,299,626 - 60,309,967 (-)	NCBI
Celera	19	44,295,476 - 44,305,865 (-)	RGD

Sequence:

show sequence

CCTAGGGCAACAGTCCGGCTCTAGCGGGCCGCGACTAGCCGCTCCGGACCTTCCTTGCCTCGCG
GCCCCGTAGGAGCGTCTAAGTGGCTGTGGCCACTTCCTCACCCCGGGGAACACTCCCTAGACAC
TTCACGGGCGGCAGAGCCGCGGAAGGAAGCAACCTTCTGGGCGGGAAGAAGATGTTAAAAACCA
TAAGCAATCACCTCAGAAATGGATCTCTGTGAGGAAAGTGAGACTTTTTTAGAAAATAAGGAAA
ACAAGAAAATTGAAGATGCAGAAGAGACGGCGCTGACTTTCCATTGTCCAGACGAGAGGAGTGA
AAGGAATCATGTCTGCTGCCTCCTTGGTGTCAGCGAGCTCACACTAGAGGAGGATGGGAGGGCC
AGCGAGTTCACCATCAGCACTGGGTGGGAGGAAGCTGTCCATGGCTGGGGAAGGACCTCACCAA
CTGCCTGCATCTGGTCAAAGAAGAAAGTGAGAAGGGGGCGGGTAGGAGAAGGCACCAGTGGTGG
CAGCAACTGCTTGTTCTGTATGAGTCTTTCGCAAGGGAGTCTGGAGCCCCGGCCCCTCTCGGCG
GCTGGGAAACTGGAGGAGGCTGCTGTGGCTGAGGTGAGCTCCCAGAAGAATTGGGGCTCTGAGA
AGAACTGGAACAGTCCCTCCCAGGGCCCTGCTTCCAGAGAGCCTAACAAACTCTGCTTTCCCAC
ATACTTGCATGGAGAAAAAAAAAGCCTGCAAATGAAGGAGTTTATCTGGTGCATGGAGGAGTGG
GGCATCCCTGAGGCAGTTAGCAGCAAGGCCTGCAGGAACCCCAGCAGCAGCACCGACCAAGGGC
TCTCCATCTCTGACGCCGTTGCAACCAAGGCTCTCGTGGTTCTACCCCCGCTGAAAAGCTCTTC
TCACAACTTGGACAGCCTGAGTAAGAAAAGCAGGAATATTTTCTGGCAGCCGGAAGAAAAGGTG
CTGGGGGTGGAAAAGGACGAGTGCATGGCTTGTCCGGATGAACTGAAAGGAGTGGACGGGAAAG
GCGAAAAGGCACACTTCGAGCTGGCCAGCCGCCTGAAGGTCACCAACATACTGCCTTTCCCACC
CACTGTGACCCGGACCCACCTGTTGTCAGCCGAGTCCCAAAGGTGCTGCCTGCACTGGTCCCTC
CTGCCCCAGAAAAGCTCTGTGTTCCCACCCAACCCCACCAACATCCACTATCTTGCCACCCTGC
AGGTTTTGGGGCAACAAGGAGGGCAAAACTGCAGAACTAGGCTTAAAGCCAAGGAAGCAAAACC
TCCCAGGACCACTCCTAAGCATATTGTCACAGAGGCCAAGCAGGAAAGCAGGCCTCATGTGCTA
GAGAGCAAAGTCTTCCCCAAACCTCTCTTGCCATCCCTCACAGTCAGCAGGGTTGTCATCCCTG
TCTCCACCCACAGAGTCCTCTGATTTGCCACAATATAATTCCCTGGGACTAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001094485	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH79279	(Get FASTA)	NCBI Sequence Viewer
	EDL92641	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000067219
	ENSRNOP00000067219.3
GenBank Protein	Q6AXX2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001094485 ⟸ NM_001101015

- UniProtKB:

Q6AXX2 (UniProtKB/Swiss-Prot), A6IZG3 (UniProtKB/TrEMBL), M0RCA7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDLCEESETFLENKENKKIEDAEETALTFHCPDERSERNHVCCLLGVSELTLEEDGRASEFTIS
TGWEEAVHGWGRTSPTACIWSKKKVRRGRVGEGTSGGSNCLFCMSLSQGSLEPRPLSAAGKLEE
AAVAEVSSQKNWGSEKNWNSPSQGPASREPNKLCFPTYLHGEKKSLQMKEFIWCMEEWGIPEAV
SSKACRNPSSSTDQGLSISDAVATKALVVLPPLKSSSHNLDSLSKKSRNIFWQPEEKVLGVEKD
ECMACPDELKGVDGKGEKAHFELASRLKVTNILPFPPTVTRTHLLSAESQRCCLHWSLLPQKSS
VFPPNPTNIHYLATLQVLGQQGGQNCRTRLKAKEAKPPRTTPKHIVTEAKQESRPHVLESKVFP
KPLLPSLTVSRVVIPVSTHRVL

hide sequence

Ensembl Acc Id:

ENSRNOP00000075426 ⟸ ENSRNOT00000082929

Ensembl Acc Id:

ENSRNOP00000074763 ⟸ ENSRNOT00000079969

Ensembl Acc Id:

ENSRNOP00000067219 ⟸ ENSRNOT00000071332

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q6AXX2-F1-model_v2	AlphaFold	Q6AXX2	1-406	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701175

Promoter ID:

EPDNEW_R11691

Type:

initiation region

Name:

LOC687399_1

Description:

hypothetical protein LOC687399

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	19	49,518,736 - 49,518,796	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1586501	AgrOrtholog
BioCyc Gene	G2FUF-5559	BioCyc
Ensembl Genes	ENSRNOG00000045541	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000071332	ENTREZGENE
	ENSRNOT00000071332.3	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7134186	IMAGE-MGC_LOAD
InterPro	DUF4529	UniProtKB/Swiss-Prot
KEGG Report	rno:687399	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94405	IMAGE-MGC_LOAD
NCBI Gene	687399	ENTREZGENE
PANTHER	CHROMOSOME 16 OPEN READING FRAME 46	UniProtKB/Swiss-Prot
	PTHR36869	UniProtKB/Swiss-Prot
Pfam	DUF4529	UniProtKB/Swiss-Prot
PhenoGen	C19h16orf46	PhenoGen
RatGTEx	ENSRNOG00000045541	RatGTEx
UniProt	A6IZG3	ENTREZGENE, UniProtKB/TrEMBL
	CP046_RAT	UniProtKB/Swiss-Prot
	M0RCA7	ENTREZGENE, UniProtKB/TrEMBL
	Q6AXX2	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-28	C19h16orf46	similar to human chromosome 16 open reading frame 46	LOC687399	hypothetical protein LOC687399	Name and Symbol changed	629549	APPROVED
2006-11-19	LOC687399	hypothetical protein LOC687399			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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