Gene: Fam169b (family with sequence similarity 169, member B) Rattus norvegicus
Analyze
Symbol:
Fam169b
Name:
family with sequence similarity 169, member B
RGD ID:
1585883
Description:
Orthologous to human FAM169BP (family with sequence similarity 169 member B, pseudogene); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; alpha-Zearalanol; amphetamine.
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
hypothetical protein LOC680906; LOC680906; uncharacterized protein Fam169b
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
FAM169BP (family with sequence similarity 169 member B, pseudogene) HGNC
EggNOG, Ensembl, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB
Mus musculus (house mouse):
Fam169b (family with sequence similarity 169, member B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Fam169b (Protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
FAM169BP (Protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Canis lupus familiaris (dog):
LOC608120 (protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
FAM169B (Protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
LOC103231258 (protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Fam169b (Protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus rattus (black rat):
Fam169b (Protein FAM169B) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Other homologs 2
Homo sapiens (human):
TSR1 (TSR1 ribosome maturation factor) HGNC
OMA
Alliance orthologs 3
Homo sapiens (human):
FAM169BP (family with sequence similarity 169 member B, pseudogene)
Alliance
DIOPT (Ensembl Compara|HGNC|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Homo sapiens (human):
FAM169BP (family with sequence similarity 169 member B, pseudogene)
Alliance
DIOPT (HGNC|Hieranoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Mus musculus (house mouse):
Fam169b (family with sequence similarity 169, member B)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
fam169b (family with sequence similarity 169 member B)
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Danio rerio (zebrafish):
fam169b (family with sequence similarity 169 member B)
Alliance
DIOPT (Ensembl Compara|Hieranoid|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):
fam169b
Alliance
DIOPT (Ensembl Compara|Hieranoid|InParanoid|OMA|OrthoFinder|OrthoInspector|PANTHER|PhylomeDB|SonicParanoid)
Latest Assembly:
GRCr8 - GRCr8 Assembly
Position:
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 131,288,780 - 131,378,548 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 1 131,288,799 - 131,370,145 (+) Ensembl GRCr8 mRatBN7.2 1 121,878,670 - 121,968,272 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 121,878,713 - 121,958,470 (+) Ensembl mRatBN7.2 Rnor_6.0 1 129,254,242 - 129,336,083 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 129,255,396 - 129,334,292 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 1 130,313,012 - 130,392,159 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 1 123,056,102 - 123,114,691 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 1 114,076,719 - 114,158,704 (+) NCBI Celera Cytogenetic Map 1 q22 NCBI
JBrowse:
Only show annotations with direct experimental evidence (0 objects hidden)
Fam169b Rat 1,2-dimethylhydrazine increases expression ISO Fam169b (Mus musculus) 6480464 1,2-Dimethylhydrazine results in increased expression of FAM169B mRNA CTD PMID:22206623 Fam169b Rat 2,3,7,8-tetrachlorodibenzodioxine affects expression ISO Fam169b (Mus musculus) 6480464 Tetrachlorodibenzodioxin affects the expression of FAM169B mRNA CTD PMID:21570461 Fam169b Rat 2,3,7,8-Tetrachlorodibenzofuran increases expression EXP 6480464 2,3,7,8-tetrachlorodibenzofuran results in increased expression of FAM169B mRNA CTD PMID:32109520 Fam169b Rat aflatoxin B1 increases methylation ISO FAM169BP (Homo sapiens) 6480464 Aflatoxin B1 results in increased methylation of FAM169BP gene CTD PMID:27153756 Fam169b Rat aflatoxin B1 decreases methylation ISO FAM169BP (Homo sapiens) 6480464 Aflatoxin B1 results in decreased methylation of FAM169BP intron CTD PMID:30157460 Fam169b Rat Aflatoxin B2 alpha increases methylation ISO FAM169BP (Homo sapiens) 6480464 aflatoxin B2 results in increased methylation of FAM169BP intron CTD PMID:30157460 Fam169b Rat alpha-Zearalanol increases expression EXP 6480464 Zeranol results in increased expression of FAM169B mRNA CTD PMID:35163327 Fam169b Rat amphetamine decreases expression EXP 6480464 Amphetamine results in decreased expression of FAM169B mRNA CTD PMID:30779732 Fam169b Rat benzo[a]pyrene increases methylation ISO FAM169BP (Homo sapiens) 6480464 Benzo(a)pyrene results in increased methylation of FAM169BP 3' UTR CTD PMID:27901495 Fam169b Rat benzo[a]pyrene affects methylation ISO FAM169BP (Homo sapiens) 6480464 Benzo(a)pyrene affects the methylation of FAM169BP 5' UTR; Benzo(a)pyrene affects the methylation of FAM169BP intron CTD PMID:27901495|PMID:30157460 Fam169b Rat benzo[e]pyrene increases methylation ISO FAM169BP (Homo sapiens) 6480464 benzo(e)pyrene results in increased methylation of FAM169BP intron CTD PMID:30157460 Fam169b Rat bisphenol A decreases expression EXP 6480464 bisphenol A results in decreased expression of FAM169B mRNA CTD PMID:25181051|PMID:32145629 Fam169b Rat cadmium atom multiple interactions ISO Fam169b (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of FAM169B more ... CTD PMID:37236586 Fam169b Rat cadmium dichloride multiple interactions ISO Fam169b (Mus musculus) 6480464 [Cadmium Chloride results in increased abundance of Cadmium] which results in increased expression of FAM169B more ... CTD PMID:37236586 Fam169b Rat carbon nanotube decreases expression ISO Fam169b (Mus musculus) 6480464 Nanotubes, Carbon analog results in decreased expression of FAM169B mRNA CTD PMID:25620056 Fam169b Rat chlordecone affects expression ISO Fam169b (Mus musculus) 6480464 Chlordecone affects the expression of FAM169B mRNA CTD PMID:29980752 Fam169b Rat dibenz[a,h]anthracene increases expression ISO Fam169b (Mus musculus) 6480464 1,2,5,6-dibenzanthracene results in increased expression of FAM169B mRNA CTD PMID:26377693 Fam169b Rat dimethylarsinic acid multiple interactions ISO Fam169b (Mus musculus) 6480464 [sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ... CTD PMID:34876320 Fam169b Rat genistein increases expression ISO Fam169b (Mus musculus) 6480464 Genistein results in increased expression of FAM169B mRNA CTD PMID:32186404 Fam169b Rat glycidol increases expression EXP 6480464 glycidol results in increased expression of FAM169B mRNA CTD PMID:24395379 Fam169b Rat methapyrilene increases methylation ISO FAM169BP (Homo sapiens) 6480464 Methapyrilene results in increased methylation of FAM169BP intron CTD PMID:30157460 Fam169b Rat methylarsonic acid multiple interactions ISO Fam169b (Mus musculus) 6480464 [sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ... CTD PMID:34876320 Fam169b Rat perfluorohexanesulfonic acid increases expression ISO Fam169b (Mus musculus) 6480464 perfluorohexanesulfonic acid results in increased expression of FAM169B mRNA CTD PMID:37995155 Fam169b Rat sodium arsenate multiple interactions ISO Fam169b (Mus musculus) 6480464 [sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ... CTD PMID:34876320 Fam169b Rat sodium arsenite decreases expression ISO Fam169b (Mus musculus) 6480464 sodium arsenite results in decreased expression of FAM169B mRNA CTD PMID:37682722 Fam169b Rat sodium arsenite multiple interactions ISO Fam169b (Mus musculus) 6480464 [sodium arsenate co-treated with sodium arsenite co-treated with monomethylarsonic acid co-treated with Cacodylic Acid] results more ... CTD PMID:34876320 Fam169b Rat thioacetamide decreases expression EXP 6480464 Thioacetamide results in decreased expression of FAM169B mRNA CTD PMID:23411599
References
Genomics
Comparative Map Data
Fam169b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 131,288,780 - 131,378,548 (+) NCBI GRCr8 GRCr8 GRCr8 GRCr8 Ensembl 1 131,288,799 - 131,370,145 (+) Ensembl GRCr8 mRatBN7.2 1 121,878,670 - 121,968,272 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 121,878,713 - 121,958,470 (+) Ensembl mRatBN7.2 Rnor_6.0 1 129,254,242 - 129,336,083 (+) NCBI Rnor_6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 129,255,396 - 129,334,292 (+) Ensembl rn6 Rnor6.0 Rnor_5.0 1 130,313,012 - 130,392,159 (+) NCBI Rnor_5.0 Rnor_5.0 rn5 RGSC_v3.4 1 123,056,102 - 123,114,691 (+) NCBI RGSC_v3.4 RGSC_v3.4 rn4 Celera 1 114,076,719 - 114,158,704 (+) NCBI Celera Cytogenetic Map 1 q22 NCBI
FAM169BP Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 15 98,437,162 - 98,514,336 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 15 98,441,071 - 98,520,386 (-) Ensembl hg38 GRCh38 GRCh38.p14 Ensembl 15 98,437,162 - 98,514,382 (-) Ensembl hg38 GRCh38 GRCh37 15 98,980,391 - 99,057,565 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 15 96,797,914 - 96,875,134 (-) NCBI Build 36 Build 36 hg18 NCBI36 Celera 15 75,398,171 - 75,475,245 (-) NCBI Celera Cytogenetic Map 15 q26.3 NCBI HuRef 15 75,108,821 - 75,185,983 (-) NCBI HuRef CHM1_1 15 98,821,961 - 98,899,182 (-) NCBI CHM1_1 T2T-CHM13v2.0 15 96,201,545 - 96,278,778 (-) NCBI T2T-CHM13v2.0
Fam169b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 7 67,923,587 - 68,012,837 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 7 67,923,587 - 68,012,840 (+) Ensembl GRCm39 Ensembl GRCm39 GRCm38 7 68,273,839 - 68,363,089 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 7 68,273,839 - 68,363,092 (+) Ensembl mm10 GRCm38 MGSCv37 7 75,418,725 - 75,507,975 (+) NCBI MGSCv37 MGSCv37 mm9 NCBIm37 MGSCv36 7 68,174,346 - 68,236,602 (+) NCBI MGSCv36 mm8 Celera 7 65,730,746 - 65,819,701 (+) NCBI Celera Cytogenetic Map 7 C NCBI cM Map 7 37.49 NCBI
Fam169b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955416 25,985,867 - 26,061,282 (-) Ensembl ChiLan1.0 NW_004955416 25,886,592 - 26,061,346 (-) NCBI ChiLan1.0 ChiLan1.0
FAM169BP Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 16 87,982,226 - 88,066,541 (-) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 15 91,681,639 - 91,729,196 (-) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 15 77,122,837 - 77,169,640 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 15 96,308,725 - 96,382,737 (-) NCBI PanPan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 15 96,308,725 - 96,356,249 (-) Ensembl panPan2 panpan1.1
LOC608120 Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 3 42,146,398 - 42,242,555 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 3 44,854,804 - 44,942,158 (+) NCBI Dog10K_Boxer_Tasha Dog10K_Boxer_Tasha ROS_Cfam_1.0 3 42,564,174 - 42,652,279 (+) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 3 42,563,903 - 42,652,275 (+) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 3 42,079,896 - 42,175,981 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 3 42,310,780 - 42,407,269 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 3 42,539,406 - 42,626,978 (+) NCBI UU_Cfam_GSD_1.0 UU_Cfam_GSD_1.0
FAM169B
LOC103231258
Fam169b
Fam169b
miRNA Target Status (No longer updated)
Predicted Target Of
Count of predictions: 116 Count of miRNA genes: 101 Interacting mature miRNAs: 107 Transcripts: ENSRNOT00000040147 Prediction methods: Microtar, Miranda, Rnahybrid, Targetscan Result types: miRGate_prediction 
