Hdhd3 (haloacid dehalogenase-like hydrolase domain containing 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Hdhd3 (haloacid dehalogenase-like hydrolase domain containing 3) Rattus norvegicus
Analyze
Symbol: Hdhd3
Name: haloacid dehalogenase-like hydrolase domain containing 3
RGD ID: 1585262
Description: Predicted to enable hydrolase activity. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human HDHD3 (haloacid dehalogenase like hydrolase domain containing 3); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: haloacid dehalogenase-like hydrolase domain-containing protein 3; LOC688746; similar to haloacid dehalogenase-like hydrolase domain containing 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,966,878 - 80,970,345 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,954,610 - 80,970,854 (-)EnsemblGRCr8
mRatBN7.2575,951,308 - 75,954,775 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,946,013 - 75,955,266 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx578,350,629 - 78,354,112 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,167,726 - 80,171,209 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,143,241 - 80,146,724 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd581,010,019 - 81,013,499 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive582,676,270 - 82,679,750 (-)NCBILyon_Normotensive
Lyon_Hypertensive581,898,100 - 81,901,580 (-)NCBILyon_Hypertensive
F344_StmMcwi575,769,085 - 75,772,565 (-)NCBIF344_StmMcwi
Rnor_6.0578,358,183 - 78,361,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,358,203 - 78,361,647 (-)Ensemblrn6Rnor6.0
Rnor_5.0582,477,554 - 82,481,021 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,494,960 - 79,498,427 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,892,752 - 74,896,129 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2-hydroxypropanoic acid  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
furan  (EXP)
GSK-J4  (ISO)
lead(0)  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
methapyrilene  (EXP)
okadaic acid  (ISO)
paracetamol  (EXP,ISO)
PCB138  (ISO)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloroethene  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
trichloroethene  (ISO)
trovafloxacin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
mitochondrion  (ISO)
nucleolus  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:14651853   PMID:34800366  


Genomics

Comparative Map Data
Hdhd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,966,878 - 80,970,345 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl580,954,610 - 80,970,854 (-)EnsemblGRCr8
mRatBN7.2575,951,308 - 75,954,775 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,946,013 - 75,955,266 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx578,350,629 - 78,354,112 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,167,726 - 80,171,209 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,143,241 - 80,146,724 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd581,010,019 - 81,013,499 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive582,676,270 - 82,679,750 (-)NCBILyon_Normotensive
Lyon_Hypertensive581,898,100 - 81,901,580 (-)NCBILyon_Hypertensive
F344_StmMcwi575,769,085 - 75,772,565 (-)NCBIF344_StmMcwi
Rnor_6.0578,358,183 - 78,361,650 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,358,203 - 78,361,647 (-)Ensemblrn6Rnor6.0
Rnor_5.0582,477,554 - 82,481,021 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4579,494,960 - 79,498,427 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera574,892,752 - 74,896,129 (-)NCBICelera
Cytogenetic Map5q24NCBI
HDHD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,373,416 - 113,376,986 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,373,417 - 113,377,473 (-)Ensemblhg38GRCh38
GRCh379116,135,696 - 116,139,266 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,175,519 - 115,178,162 (-)NCBIBuild 36Build 36hg18NCBI36
Build 349113,215,251 - 113,217,895NCBI
Celera986,783,309 - 86,785,952 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,742,903 - 85,745,542 (-)NCBIHuRef
CHM1_19116,282,329 - 116,284,972 (-)NCBICHM1_1
T2T-CHM13v2.09125,572,225 - 125,575,795 (-)NCBIT2T-CHM13v2.0
Hdhd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,417,291 - 62,420,437 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,417,245 - 62,421,704 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38462,499,054 - 62,502,200 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,499,008 - 62,503,467 (-)Ensemblmm10GRCm38
MGSCv37462,160,088 - 62,163,234 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36461,985,415 - 61,988,561 (-)NCBIMGSCv36mm8
Celera461,169,194 - 61,172,340 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.16NCBI
Hdhd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,118,730 - 14,123,578 (+)Ensembl
ChiLan1.0NW_00495541914,118,729 - 14,123,578 (+)NCBIChiLan1.0ChiLan1.0
HDHD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21125,999,646 - 26,000,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,002,033 - 26,002,978 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,475,044 - 84,478,660 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,846,292 - 112,849,615 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,846,474 - 112,847,229 (-)EnsemblpanPan2panpan1.1
HDHD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,729,133 - 67,731,956 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,729,275 - 67,730,030 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1166,133,961 - 66,136,782 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01168,853,614 - 68,856,241 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,852,459 - 68,856,195 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,371,737 - 67,374,362 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,402,609 - 67,405,235 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,139,610 - 68,142,238 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Hdhd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947183,018,496 - 183,021,723 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559244,831 - 247,732 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936559244,831 - 247,732 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HDHD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1254,001,327 - 254,009,174 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11254,006,018 - 254,009,804 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HDHD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,195,140 - 26,199,085 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,198,153 - 26,198,908 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603516,602,448 - 16,606,490 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hdhd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,728,894 - 21,730,871 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476021,724,893 - 21,730,871 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Hdhd3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1191,030,552 - 91,034,192 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Hdhd3
25 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:150
Count of miRNA genes:115
Interacting mature miRNAs:125
Transcripts:ENSRNOT00000020380
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53801167083011670Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)55266537294894052Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)573779642118779642Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)544924861153890773Rat
6907115Mcs29Mammary carcinoma susceptibility QTL 29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)53800433183004331Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)573779642103472210Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)538207390136631402Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)565089051103648916Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)548523123134369373Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)573779642118779642Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53801167083011670Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53801167083011670Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)565089051166764498Rat
1331782Rf36Renal function QTL 363.296kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)539019942102105896Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)551657967166600247Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)53998594884985948Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)5692228281330203Rat
7394708Emca11Estrogen-induced mammary cancer QTL 11mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)573176602118176602Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)53952692484526924Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54852312391770353Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)569474415114474415Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)560601597137492949Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906491770353Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)560511627105511627Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)574335621156302135Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)536460764136631402Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)564589016109589016Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)569835120114835120Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)51001906487027358Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)570969494136328156Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)56458901693503770Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)573779642118779642Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)556546393101546393Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)56458901691762830Rat

Markers in Region
RH130521  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2575,951,528 - 75,951,715 (+)MAPPERmRatBN7.2
Rnor_6.0578,358,404 - 78,358,590NCBIRnor6.0
Rnor_5.0582,477,775 - 82,477,961UniSTSRnor5.0
RGSC_v3.4579,495,181 - 79,495,367UniSTSRGSC3.4
Celera574,892,973 - 74,893,159UniSTS
RH 3.4 Map5558.1UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 78 59 6 342 178 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000020380   ⟹   ENSRNOP00000020380
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl578,358,203 - 78,361,647 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118724   ⟹   ENSRNOP00000094317
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,961,074 - 80,970,854 (-)Ensembl
mRatBN7.2 Ensembl575,946,013 - 75,955,266 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000142649   ⟹   ENSRNOP00000111444
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl580,954,610 - 80,970,822 (-)Ensembl
RefSeq Acc Id: NM_001109511   ⟹   NP_001102981
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,966,878 - 80,970,345 (-)NCBI
mRatBN7.2575,951,308 - 75,954,775 (-)NCBI
Dahl_SR_JrHsd581,010,019 - 81,013,499 (-)NCBI
Lyon_Normotensive582,676,270 - 82,679,750 (-)NCBI
Lyon_Hypertensive581,898,100 - 81,901,580 (-)NCBI
F344_StmMcwi575,769,085 - 75,772,565 (-)NCBI
Rnor_6.0578,358,183 - 78,361,650 (-)NCBI
Rnor_5.0582,477,554 - 82,481,021 (-)NCBI
RGSC_v3.4579,494,960 - 79,498,427 (-)RGD
Celera574,892,752 - 74,896,129 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102981 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI66898 (Get FASTA)   NCBI Sequence Viewer  
  EDM10554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000094317
  ENSRNOP00000094317.1
  ENSRNOP00000111444.1
RefSeq Acc Id: NP_001102981   ⟸   NM_001109511
- UniProtKB: B2RYT7 (UniProtKB/TrEMBL),   A6J7V3 (UniProtKB/TrEMBL),   A0A8I6AQS2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000020380   ⟸   ENSRNOT00000020380
Ensembl Acc Id: ENSRNOP00000094317   ⟸   ENSRNOT00000118724
Ensembl Acc Id: ENSRNOP00000111444   ⟸   ENSRNOT00000142649

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B2RYT7-F1-model_v2 AlphaFold B2RYT7 1-251 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693793
Promoter ID:EPDNEW_R4316
Type:multiple initiation site
Name:Hdhd3_1
Description:haloacid dehalogenase-like hydrolase domain containing 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0578,361,597 - 78,361,657EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1585262 AgrOrtholog
BioCyc Gene G2FUF-41091 BioCyc
Ensembl Genes ENSRNOG00000015195 Ensembl
  ENSRNOG00000064638 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000118724 ENTREZGENE
  ENSRNOT00000118724.2 UniProtKB/TrEMBL
  ENSRNOT00000142649.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.720 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6922018 IMAGE-MGC_LOAD
InterPro HAD-like_dom UniProtKB/TrEMBL
  HAD-like_hydrolase_domain UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD-SF_hydro_IA_REG-2-like UniProtKB/TrEMBL
  HAD-SF_hydro_IA_REG-2-like_cap UniProtKB/TrEMBL
  HAD-SF_hydro_IA_v1 UniProtKB/TrEMBL
KEGG Report rno:688746 UniProtKB/TrEMBL
MGC_CLONE MGC:188859 IMAGE-MGC_LOAD
NCBI Gene 688746 ENTREZGENE
PANTHER HALOACID DEHALOGENASE-LIKE HYDROLASE DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
  PTHR46191 UniProtKB/TrEMBL
Pfam Hydrolase UniProtKB/TrEMBL
PhenoGen Hdhd3 PhenoGen
PRINTS HADHALOGNASE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015195 RatGTEx
  ENSRNOG00000064638 RatGTEx
Superfamily-SCOP HAD-like_dom UniProtKB/TrEMBL
UniProt A0A8I6AQS2 ENTREZGENE, UniProtKB/TrEMBL
  A6J7V3 ENTREZGENE, UniProtKB/TrEMBL
  B2RYT7 ENTREZGENE
UniProt Secondary B2RYT7 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Hdhd3  haloacid dehalogenase-like hydrolase domain containing 3  LOC688746  similar to haloacid dehalogenase-like hydrolase domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC688746  similar to haloacid dehalogenase-like hydrolase domain containing 3  LOC682946  similar to haloacid dehalogenase-like hydrolase domain containing 3  Data merged from RGD:1592798 1643240 APPROVED
2006-11-20 LOC682946  similar to haloacid dehalogenase-like hydrolase domain containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688746  similar to haloacid dehalogenase-like hydrolase domain containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL