Advanced Search (OLGA)

Gene: Septin6 (septin 6) Rattus norvegicus

Analyze

Symbol:

Septin6

Name:

septin 6

RGD ID:

1585082

Description:

Predicted to enable GTPase activity and molecular adaptor activity. Predicted to be involved in cytoskeleton-dependent cytokinesis and intracellular protein localization. Predicted to be located in several cellular components, including cleavage furrow; septin collar; and sperm annulus. Predicted to be part of septin complex. Predicted to be active in cell division site; cytoskeleton; and presynapse. Orthologous to human SEPTIN6 (septin 6); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC691335; MGC189443; Sept6; septin-6; similar to septin 6

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEPTIN6 (septin 6)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Septin6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Septin6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEPTIN6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEPTIN6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Septin6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEPTIN6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEPTIN6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Septin6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Septin6 (septin 6)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SEPTIN6 (septin 6)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Septin6 (septin 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sept6 (septin 6)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	CDC11	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Drosophila melanogaster (fruit fly):	Sep2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sep5	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	unc-61	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	SHS1	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	septin6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	septin6	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	121,018,951 - 121,157,677 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	121,018,944 - 121,095,792 (-)	Ensembl				GRCr8
mRatBN7.2	X	116,153,255 - 116,230,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	116,153,255 - 116,230,115 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	118,260,460 - 118,333,344 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	121,829,599 - 121,902,491 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	119,375,754 - 119,448,595 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	123,524,954 - 123,601,214 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,524,950 - 123,662,350 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	123,669,895 - 123,746,145 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	7,871,020 - 7,949,967 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	115,386,688 - 115,458,210 (-)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsenous acid (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

buta-1,3-diene (ISO)

cadmium atom (ISO)

carbon nanotube (ISO)

chloroprene (ISO)

chromium(6+) (ISO)

copper atom (ISO)

copper(0) (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

hydroquinone (ISO)

ivermectin (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

poly(I:C) (EXP)

propanal (ISO)

rimonabant (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium fluoride (EXP)

Soman (EXP)

sulforaphane (ISO)

testosterone (EXP,ISO)

thioacetamide (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vincristine (ISO)

vitamin E (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cytoskeleton organization (IEA,ISO)

cytoskeleton-dependent cytokinesis (IBA)

intracellular protein localization (IBA)

Cellular Component

axon terminus (IEA,ISO)

cell division site (IBA)

cell projection (IEA)

cleavage furrow (IEA,ISO)

cytoskeleton (IEA)

microtubule cytoskeleton (IBA)

presynapse (IEA,ISO)

septin collar (IEA,ISO)

septin complex (IBA,IEA,ISO)

septin ring (IBA,IEA,ISO)

sperm annulus (IEA,ISO)

synaptic vesicle (IEA,ISO)

Molecular Function

GTP binding (IEA)

GTPase activity (IBA)

molecular adaptor activity (IBA)

nucleotide binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11064363	PMID:12477932	PMID:15632090	PMID:18809578	PMID:21544625	PMID:22232702	PMID:25588830	PMID:28131823	PMID:30315255

Genomics

Comparative Map Data

Septin6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	121,018,951 - 121,157,677 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	121,018,944 - 121,095,792 (-)	Ensembl				GRCr8
mRatBN7.2	X	116,153,255 - 116,230,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	116,153,255 - 116,230,115 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	118,260,460 - 118,333,344 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	121,829,599 - 121,902,491 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	119,375,754 - 119,448,595 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	123,524,954 - 123,601,214 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	123,524,950 - 123,662,350 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	123,669,895 - 123,746,145 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	7,871,020 - 7,949,967 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	115,386,688 - 115,458,210 (-)	NCBI		Celera
Cytogenetic Map	X	q34	NCBI

SEPTIN6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	119,615,724 - 119,693,168 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	119,615,724 - 119,693,949 (-)	Ensembl			hg38	GRCh38
GRCh37	X	118,749,687 - 118,827,131 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	118,633,715 - 118,711,361 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	118,531,571 - 118,609,215	NCBI
Celera	X	119,204,389 - 119,281,983 (-)	NCBI		Celera
Cytogenetic Map	X	q24	NCBI
HuRef	X	108,243,227 - 108,320,808 (-)	NCBI		HuRef
CHM1_1	X	118,661,311 - 118,738,951 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	117,993,452 - 118,071,836 (-)	NCBI		T2T-CHM13v2.0

Septin6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	36,174,925 - 36,253,711 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	36,174,979 - 36,255,447 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	36,911,272 - 36,990,036 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	36,911,326 - 36,991,794 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	34,451,267 - 34,529,690 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	33,343,690 - 33,420,902 (-)	NCBI		MGSCv36	mm8
Celera	X	23,634,917 - 23,713,330 (-)	NCBI		Celera
Cytogenetic Map	X	A3.3	NCBI
cM Map	X	21.32	NCBI

Septin6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955534	305,865 - 382,262 (+)	Ensembl
ChiLan1.0	NW_004955534	306,691 - 381,799 (+)	NCBI	ChiLan1.0	ChiLan1.0

SEPTIN6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	118,997,307 - 119,075,309 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	119,000,910 - 119,078,834 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	108,648,294 - 108,726,196 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	119,074,291 - 119,152,830 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	119,074,291 - 119,152,830 (-)	Ensembl			panPan2	panpan1.1

SEPTIN6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	91,647,293 - 91,714,379 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	91,647,969 - 91,714,164 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	77,722,082 - 77,789,109 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	93,386,421 - 93,453,554 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	93,386,425 - 93,454,230 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	90,839,093 - 90,906,188 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	92,597,841 - 92,664,953 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	92,327,013 - 92,394,128 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Septin6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	90,682,172 - 90,754,460 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936479	10,233,005 - 10,305,392 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936479	10,233,035 - 10,305,327 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEPTIN6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	98,031,890 - 98,161,607 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	98,033,212 - 98,106,082 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	113,558,623 - 113,631,613 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEPTIN6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666065	32,369,118 - 32,449,079 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Septin6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624895	3,582,538 - 3,650,010 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624895	3,583,198 - 3,649,478 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Septin6
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	103,094,245 - 103,170,223 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Septin6
288 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	377
Count of miRNA genes:	209
Interacting mature miRNAs:	242
Transcripts:	ENSRNOT00000067942
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598856	Memor1	Memory QTL 1	1.9		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	X	120028026	141353710	Rat
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
1598809	Memor15	Memory QTL 15	4.4		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	120028026	141353710	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
10059603	Bw174	Body weight QTL 174	3.4	0.025	body mass (VT:0001259)	body weight (CMO:0000012)	X	118973754	157758123	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

DXGot53

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	121,064,854 - 121,065,112 (+)	Marker Load Pipeline
mRatBN7.2	X	116,199,160 - 116,199,418 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	123,570,848 - 123,571,105	NCBI	Rnor6.0
Rnor_5.0	X	123,715,789 - 123,716,046	UniSTS	Rnor5.0
RGSC_v3.4	X	7,907,347 - 7,907,604	UniSTS	RGSC3.4
RGSC_v3.4	X	7,907,346 - 7,907,604	RGD	RGSC3.4
Celera	X	115,429,051 - 115,429,308	UniSTS
RGSC_v3.1	X	7,912,903 - 7,913,160	RGD
Cytogenetic Map	X	q12	UniSTS

DBX

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	9,479,848 - 9,479,935 (+)	MAPPER	mRatBN7.2
mRatBN7.2	X	116,167,281 - 116,167,369 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	123,538,974 - 123,539,061	NCBI	Rnor6.0
Rnor_6.0	X	10,400,680 - 10,400,766	NCBI	Rnor6.0
Rnor_5.0	X	123,683,915 - 123,684,002	UniSTS	Rnor5.0
Rnor_5.0	X	11,199,062 - 11,199,148	UniSTS	Rnor5.0
RGSC_v3.4	X	21,495,386 - 21,495,472	UniSTS	RGSC3.4
RGSC_v3.4	X	7,939,396 - 7,939,483	UniSTS	RGSC3.4
Celera	X	115,397,167 - 115,397,254	UniSTS
Celera	X	10,011,594 - 10,011,680	UniSTS
Cytogenetic Map	X	q12	UniSTS

RH144503

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	X	121,092,611 - 121,092,855 (+)	Marker Load Pipeline
mRatBN7.2	X	116,226,921 - 116,227,165 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	123,597,710 - 123,597,953	NCBI	Rnor6.0
Rnor_5.0	X	123,742,746 - 123,742,989	UniSTS	Rnor5.0
Celera	X	115,455,030 - 115,455,273	UniSTS
Cytogenetic Map	X	q12	UniSTS

AI072432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	116,156,950 - 116,157,137 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	123,528,646 - 123,528,832	NCBI	Rnor6.0
Rnor_5.0	X	123,673,587 - 123,673,773	UniSTS	Rnor5.0
RGSC_v3.4	X	7,949,626 - 7,949,812	UniSTS	RGSC3.4
Celera	X	115,386,843 - 115,387,029	UniSTS
Cytogenetic Map	X	q12	UniSTS

UniSTS:488532

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	116,292,100 - 116,293,543 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	123,662,548 - 123,663,990	NCBI	Rnor6.0
Rnor_5.0	X	123,806,258 - 123,807,700	UniSTS	Rnor5.0
RGSC_v3.4	X	7,869,506 - 7,870,948	UniSTS	RGSC3.4
Celera	X	115,519,980 - 115,521,422	UniSTS
Cytogenetic Map	X	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173429	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006257463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602157	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602158	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602159	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC169051	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473991	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000067942 ⟹ ENSRNOP00000061494

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,022,493 - 121,095,792 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,156,797 - 116,230,115 (-)	Ensembl
Rnor_6.0 Ensembl	X	123,528,491 - 123,600,890 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092301 ⟹ ENSRNOP00000075754

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	116,163,234 - 116,213,556 (-)	Ensembl
Rnor_6.0 Ensembl	X	123,525,926 - 123,601,100 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092408 ⟹ ENSRNOP00000075880

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,029,341 - 121,079,250 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,163,634 - 116,230,102 (-)	Ensembl
Rnor_6.0 Ensembl	X	123,535,327 - 123,600,890 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092546 ⟹ ENSRNOP00000075809

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,018,944 - 121,095,792 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,153,255 - 116,230,115 (-)	Ensembl
Rnor_6.0 Ensembl	X	123,524,950 - 123,601,100 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092624 ⟹ ENSRNOP00000075771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	123,576,039 - 123,662,350 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000092670 ⟹ ENSRNOP00000075833

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,022,321 - 121,095,792 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,163,834 - 116,230,115 (-)	Ensembl
Rnor_6.0 Ensembl	X	123,525,926 - 123,601,100 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109309 ⟹ ENSRNOP00000088464

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,020,482 - 121,095,792 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,154,475 - 116,230,115 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119795 ⟹ ENSRNOP00000081808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	121,029,341 - 121,078,965 (-)	Ensembl
mRatBN7.2 Ensembl	X	116,163,234 - 116,213,271 (-)	Ensembl

RefSeq Acc Id:

NM_001173429 ⟹ NP_001166900

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,022,492 - 121,095,792 (-)	NCBI
mRatBN7.2	X	116,156,796 - 116,230,102 (-)	NCBI
Rnor_6.0	X	123,528,491 - 123,600,890 (-)	NCBI
Rnor_5.0	X	123,669,895 - 123,746,145 (-)	NCBI
Celera	X	115,386,688 - 115,458,210 (-)	NCBI

Sequence:

show sequence

AGCAGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGCGGCC
GATATAGCTCGCCAGGTGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTG
ACAGCTTGCCTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTG
CGTGGGGGAGACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAA
GGGGAGCCAACGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGG
AGAGCAATGTGGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAA
GGAGGACAGCTACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAG
GAGCTGAAGATCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATT
TCATTGCCCCGACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAG
TAAGGTGAACATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAG
TTCAAGATCAAAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAG
ATGATGAGTCGGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGG
CAGCACAGAAGAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACC
GTGCAGGTTGAAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCA
ACATGGAGGATCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCT
GGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATAT
GAGGCGAAAAGAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGT
TTGTCCAGAGAGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAA
GTTTGACCGTCTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGT
CTGGATGAGGAAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGG
GCTCTCAGGCTGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAATTAACCCTGCTG
TTTGCTGCATGCTGCATGACACCCAGGGTCCTGTTTGGGCTTCCTGTAGACGCGCTCTTTCCTG
TGCAACAGAGCTGGGCCTCCCTCTCTTTATTTCCCCCTTAACATGCTTAGGGGGCATACACCCC
ATGCCTTCCCCTTTTCTTCCTGCGAATGTTTATAGAAGCCTGAGAGTCAAATGACGATGTCTGG
CCCCTGACCAAGAAGCCAACAATCACGTGGCTTGGAGATACATTCCATACCTCAGTCCCTCTCC
TAGTACCCTCAGCCATATGCACCCCCACTTCCCCAATCTATCTTCGCCAGACTGTCATGTGTTT
ACGGGTTGCTGTTTGCCACATTTTATGTACTCCATTTGAATTCCACTGATACTTGTTTCCTTGA
AGTATTTCCAGCCACTGACTGGATAAGACTCCTGCATCCTTGTCACTGGGATTGTTCTCCCACT
CCTAATGCCAGGAGCATAGCCCCTCATCACAGGTTCTAAAAGAATTGCTGGAGATGCCTATTTC
TTCTACTATCTTAGCCCAGCCCTTTCTCGATTCCATTTCCTCGGAATCACTTTGCACAAGCTAT
GTTAAAAGTCAGCCACACATTTATTTACACCAAGCCCTTCCTATACAAAATACAACTGCTGGGG
CAGACAGTCTATACTCCCCCTCTGTAATTCTGGGTACCTCACAGATACAGAAGGGACAATAAAC
CAGAATGTCATTACCAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006257463 ⟹ XP_006257525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,096,196 (-)	NCBI
mRatBN7.2	X	116,154,448 - 116,230,328 (-)	NCBI
Rnor_6.0	X	123,526,143 - 123,601,207 (-)	NCBI
Rnor_5.0	X	123,669,895 - 123,746,145 (-)	NCBI

Sequence:

show sequence

CGGGACGTACCACGGAGCCCAGTAGCGGCAGGGAGGGGGGGCGGAGGACGTGGTCACCGAGGGG
AGCCCCCGCCCCCTTCTCAGAGGCCGAGACTCCGGTTGCAGAGAGAACTGGAACTGGGCTCGCC
CTAGGGGAAGGCAGCGCGGCCAATCCGTCCCCTCCCCACACCTACTTTGAGGGGGTGGGTGATA
GAGGAGAGGTTGGGGTTGGAGCAGCGGTGAGGGGGCCCCTCCCTGGCACCTCCCTCCACCAGAC
TTGGTCGCGCCCGAAGTGTAACACTTTCTCTTTGTCGGAGGAGCTCTTCTGTTTCCTGTGCAGC
AGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGCGGCCGAT
ATAGCTCGCCAGGTGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACA
GCTTGCCTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGT
GGGGGAGACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAAGGG
GAGCCAACGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGGAGA
GCAATGTGGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAAGGA
GGACAGCTACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAGGAG
CTGAAGATCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATTTCA
TTGCCCCGACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAGTAA
GGTGAACATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAGTTC
AAGATCAAAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAGATG
ATGAGTCGGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGGCAG
CACAGAAGAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACCGTG
CAGGTTGAAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCAACA
TGGAGGATCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCTGGA
GGAGATGGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATATGAG
GCGAAAAGAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGTTTG
TCCAGAGAGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAGTT
TGACCGTCTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGTCTG
GATGAGGAAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGGGCT
CTCAGGCTGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAATAACCCATGGCTGTG
TACTGAATAGTATGCCCTGCTACAGCTGGACTGGACTCCACTTAGCCTTTTAAGCGAAGGTTCT
TATTTTAACTGACAACTTTTTTTAAAATGGTGCCAGACAGCTGGGCCCTCCACCCCTGCTCTGG
TACTTCAAGCATTTTGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGAGTTCTGCAACTTGCTT
CTGCCTTCCAGTCCCACTGGCACGGACCATGACCTTCTTCTTTTTTCTTGTTATAAAGGTGGCT
GTATGATCACTACCTCTAAAGAAATTCAAGGTGATAATAAATTTACAGGCCTTCTGAACTGTTA
CGAAAAGGCAGGGGCCATTGTCTACAGTCATAGTTAATAACTTAAACCTAAGACTAAGCCCAAA
GCAGAACTAGTTAAAGGCAAGCAAGTCTATGTGCGAACTTTCTCTTTTCTAGTTGGCAAAGAAG
TGGTTTTGATGCGTACTGGCCAGCGGACAGAGGCAAGTACAGGGTGACAATGTGAAAGCATGTG
GTTGTCCTTGAGGAAAGCCAACTGGAAGGAGAGAATTTCAGGAAAACCTATACCTAGAGGCAAA
ACAAAACAAGTCACCACCAAGAACTGAAAGCCCCAAAGCAGAATTCCCAAGTATCTCAGATACA
ATCAGCTGTCTGGGTCTCCTTGAGAAAGGCTCCTTATTTGTAGCCATGGGGGTTTTTTTTGTGT
GTGTGTTTGTTTGTTTGTTTTTAAAACAGGTTCTTACTATGTAGCCCTGACTGGCCTTGAAATC
ACAATGTAGACCAGGCTGGCCTGAAATTCACAGAGATTTGCCTGTCTGTATTTCCTGAGTGCTG
GGGTTAAAGTGCCTTAGGGGTTTTACTTCACCTTTCCAGACTGCCAGAAAATATGGTCTTCCTT
AAGAAGTACTCGTATTTTTAAATGAGGCCTTTCCTTTGCATTTGTATATAAACTCTCTACTTGA
GGCTGGAGGATCTCAAAATACTTCACAAGTATTTGAGCTACGCAACCTTCCAAAAGCAAGCAGA
AATTGTACATAAAGTGAGGAGCTTTTTAGTCAGCATGGCTGATATCCATTGACACGTAGAGAAA
TGAAGATTTCCAATTTCCTGTCTCTGGGTTCCCAATCAAAAATCCAAGTATTTATGTATCTTCC
TGGAGACAAGATTTTTTTTTGATGTTCAGAAAAACCAGTGTTAGAAGACTCTTGAGGGTTTTCA
CATAGAAAAATAGTATAGGATGGGTAGGCATAGGTGAAGAGAAGGCTCCAGGCCAGCTGCCATG
ATGCCGGATGATTAGTTAGCTGTATGTAAGTCTTACAGAGGATCAGCTCCTGTAAGTCTGGACC
AGGACCAGGCCAGTGTACATTTCACTGGTGCAATGTGAAATCGGGGAACTCAGGTGGACAAAAA
GGCAGTCGAACCTATTAAAAGATGATGCTAAATTTCATTGAGAAGTTCTTCCCCCTGTAAATGG
AAAAGCTTATGTTTTTCTTCACTAGAATGTCTTTAATTAGTACAATTGTTACTAATTAAAAAAA
ATCCCTAGGTTCCTGGTTTGCTTCTAATGAAACAAAAACCACTCAATAGAAATGGTCTGTGCTG
GGAAATCCAGACTCGAATGGAATGACTTCCTGAAATACACTCACACACACACACACACACACAC
ACACACACACACACACACACACACACGCACGCATGCACACACCACGCACCCTTCATTTCTATTA
AAGCCAAGAAGTCTGCTTTCCCCACCTGGTTTGGATTTTTTTTTAAATCATTTGGCATTCACAG
TTGGCTGTTAATGTGTGCTTATTTTTAAATTAAAGCAAGATGCAATTAAA

hide sequence

RefSeq Acc Id:

XM_017602157 ⟹ XP_017457646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,096,081 (-)	NCBI
mRatBN7.2	X	116,154,448 - 116,230,334 (-)	NCBI
Rnor_6.0	X	123,526,143 - 123,601,214 (-)	NCBI

Sequence:

show sequence

CAGAGGTCGGGACGTACCACGGAGCCCAGTAGCGGCAGGGAGGGGGGGCGGAGGACGTGGTCAC
CGAGGGGAGCCCCCGCCCCCTTCTCAGAGGCCGAGACTCCGGTTGCAGAGAGAACTGGAACTGG
GCTCGCCCTAGGGGAAGGCAGCGCGGCCAATCCGTCCCCTCCCCACACCTACTTTGAGGGGGTG
GGTGATAGAGGAGAGGTTGGGGTTGGAGCAGCGGTGAGGGGGCCCCTCCCTGGCACCTCCCTCC
ACCAGACTTGGTCGCGCCCGAAGTGTAACACTTTCTCTTTGTCGGAGGAGCTCTTCTGTTTCCT
GTGCAGCAGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGC
GGCCGATATAGCTCGCCAGGTGGTGCATTGAAACTACATACAAGACACGTGGAAAGAAGAAAAG
GGGATGGGGAACGGAGAGAGGAAGAAGGGGAAGGAAGGAAAAGGGAAACCATGCATAGATGCTC
TCTTGAAACGCATCCATCTGCATGACTTTTGCCCCAACAACTTCCTGGACAGATCCCCGTTAAA
CGAGACCAGATGGAGGCAGAGGCGAATTCAGGCTCCCAAGAGGGCAGTTGGGCATTCACCCAGA
GGCCTATGGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACAGCTTGC
CTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGTGGGGGA
GACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAAGGGGAGCCA
ACGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGGAGAGCAATG
TGGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAAGGAGGACAG
CTACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAGGAGCTGAAG
ATCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATTTCATTGCCC
CGACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAGTAAGGTGAA
CATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATC
AAAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAGATGATGAGT
CGGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGGCAGCACAGA
AGAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACCGTGCAGGTT
GAAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCAACATGGAGG
ATCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCTGGAGGAGAT
GGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATATGAGGCGAAA
AGAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGTTTGTCCAGA
GAGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAGTTTGACCG
TCTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGTCTGGATGAG
GAAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGGGCTCTCAGG
CTGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAATAACCCATGGCTGTGTACTGA
ATAGTATGCCCTGCTACAGCTGGACTGGACTCCACTTAGCCTTTTAAGCGAAGGTTCTTATTTT
AACTGACAACTTTTTTTAAAATGGTGCCAGACAGCTGGGCCCTCCACCCCTGCTCTGGTACTTC
AAGCATTTTGGTTTTTTTGTTTTGTTTTGTTTTGTTTTTTGAGTTCTGCAACTTGCTTCTGCCT
TCCAGTCCCACTGGCACGGACCATGACCTTCTTCTTTTTTCTTGTTATAAAGGTGGCTGTATGA
TCACTACCTCTAAAGAAATTCAAGGTGATAATAAATTTACAGGCCTTCTGAACTGTTACGAAAA
GGCAGGGGCCATTGTCTACAGTCATAGTTAATAACTTAAACCTAAGACTAAGCCCAAAGCAGAA
CTAGTTAAAGGCAAGCAAGTCTATGTGCGAACTTTCTCTTTTCTAGTTGGCAAAGAAGTGGTTT
TGATGCGTACTGGCCAGCGGACAGAGGCAAGTACAGGGTGACAATGTGAAAGCATGTGGTTGTC
CTTGAGGAAAGCCAACTGGAAGGAGAGAATTTCAGGAAAACCTATACCTAGAGGCAAAACAAAA
CAAGTCACCACCAAGAACTGAAAGCCCCAAAGCAGAATTCCCAAGTATCTCAGATACAATCAGC
TGTCTGGGTCTCCTTGAGAAAGGCTCCTTATTTGTAGCCATGGGGGTTTTTTTTGTGTGTGTGT
TTGTTTGTTTGTTTTTAAAACAGGTTCTTACTATGTAGCCCTGACTGGCCTTGAAATCACAATG
TAGACCAGGCTGGCCTGAAATTCACAGAGATTTGCCTGTCTGTATTTCCTGAGTGCTGGGGTTA
AAGTGCCTTAGGGGTTTTACTTCACCTTTCCAGACTGCCAGAAAATATGGTCTTCCTTAAGAAG
TACTCGTATTTTTAAATGAGGCCTTTCCTTTGCATTTGTATATAAACTCTCTACTTGAGGCTGG
AGGATCTCAAAATACTTCACAAGTATTTGAGCTACGCAACCTTCCAAAAGCAAGCAGAAATTGT
ACATAAAGTGAGGAGCTTTTTAGTCAGCATGGCTGATATCCATTGACACGTAGAGAAATGAAGA
TTTCCAATTTCCTGTCTCTGGGTTCCCAATCAAAAATCCAAGTATTTATGTATCTTCCTGGAGA
CAAGATTTTTTTTTGATGTTCAGAAAAACCAGTGTTAGAAGACTCTTGAGGGTTTTCACATAGA
AAAATAGTATAGGATGGGTAGGCATAGGTGAAGAGAAGGCTCCAGGCCAGCTGCCATGATGCCG
GATGATTAGTTAGCTGTATGTAAGTCTTACAGAGGATCAGCTCCTGTAAGTCTGGACCAGGACC
AGGCCAGTGTACATTTCACTGGTGCAATGTGAAATCGGGGAACTCAGGTGGACAAAAAGGCAGT
CGAACCTATTAAAAGATGATGCTAAATTTCATTGAGAAGTTCTTCCCCCTGTAAATGGAAAAGC
TTATGTTTTTCTTCACTAGAATGTCTTTAATTAGTACAATTGTTACTAATTAAAAAAAATCCCT
AGGTTCCTGGTTTGCTTCTAATGAAACAAAAACCACTCAATAGAAATGGTCTGTGCTGGGAAAT
CCAGACTCGAATGGAATGACTTCCTGAAATACACTCACACACACACACACACACACACACACAC
ACACACACACACACACACACGCACGCATGCACACACCACGCACCCTTCATTTCTATTAAAGCCA
AGAAGTCTGCTTTCCCCACCTGGTTTGGATTTTTTTTTAAATCATTTGGCATTCACAGTTGGCT
GTTAATGTGTGCTTATTTTTAAATTAAAGCAAGATGCAATTAAA

hide sequence

RefSeq Acc Id:

XM_017602158 ⟹ XP_017457647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,022,492 - 121,096,080 (-)	NCBI
mRatBN7.2	X	116,156,796 - 116,230,333 (-)	NCBI
Rnor_6.0	X	123,528,488 - 123,601,214 (-)	NCBI

Sequence:

show sequence

CAGAGGTCGGGACGTACCACGGAGCCCAGTAGCGGCAGGGAGGGGGGGCGGAGGACGTGGTCAC
CGAGGGGAGCCCCCGCCCCCTTCTCAGAGGCCGAGACTCCGGTTGCAGAGAGAACTGGAACTGG
GCTCGCCCTAGGGGAAGGCAGCGCGGCCAATCCGTCCCCTCCCCACACCTACTTTGAGGGGGTG
GGTGATAGAGGAGAGGTTGGGGTTGGAGCAGCGGTGAGGGGGCCCCTCCCTGGCACCTCCCTCC
ACCAGACTTGGTCGCGCCCGAAGTGTAACACTTTCTCTTTGTCGGAGGAGCTCTTCTGTTTCCT
GTGCAGCAGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGC
GGCCGATATAGCTCGCCAGGTGGTGCATTGAAACTACATACAAGACACGTGGAAAGAAGAAAAG
GGGATGGGGAACGGAGAGAGGAAGAAGGGGAAGGAAGGAAAAGGGAAACCATGCATAGATGCTC
TCTTGAAACGCATCCATCTGCATGACTTTTGCCCCAACAACTTCCTGGACAGATCCCCGTTAAA
CGAGACCAGATGGAGGCAGAGGCGAATTCAGGCTCCCAAGAGGGCAGTTGGGCATTCACCCAGA
GGCCTATGGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACAGCTTGC
CTGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGTGGGGGA
GACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAAGGGGAGCCA
ACGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGGAGAGCAATG
TGGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAAGGAGGACAG
CTACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAGGAGCTGAAG
ATCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATTTCATTGCCC
CGACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAGTAAGGTGAA
CATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATC
AAAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAGATGATGAGT
CGGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGGCAGCACAGA
AGAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACCGTGCAGGTT
GAAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCAACATGGAGG
ATCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCTGGAGGAGAT
GGGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATATGAGGCGAAA
AGAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGTTTGTCCAGA
GAGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAGTTTGACCG
TCTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGTCTGGATGAG
GAAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGGGCTCTCAGG
CTGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAATTTGGGCTTCCTGTAGACGCG
CTCTTTCCTGTGCAACAGAGCTGGGCCTCCCTCTCTTTATTTCCCCCTTAACATGCTTAGGGGG
CATACACCCCATGCCTTCCCCTTTTCTTCCTGCGAATGTTTATAGAAGCCTGAGAGTCAAATGA
CGATGTCTGGCCCCTGACCAAGAAGCCAACAATCACGTGGCTTGGAGATACATTCCATACCTCA
GTCCCTCTCCTAGTACCCTCAGCCATATGCACCCCCACTTCCCCAATCTATCTTCGCCAGACTG
TCATGTGTTTACGGGTTGCTGTTTGCCACATTTTATGTACTCCATTTGAATTCCACTGATACTT
GTTTCCTTGAAGTATTTCCAGCCACTGACTGGATAAGACTCCTGCATCCTTGTCACTGGGATTG
TTCTCCCACTCCTAATGCCAGGAGCATAGCCCCTCATCACAGGTTCTAAAAGAATTGCTGGAGA
TGCCTATTTCTTCTACTATCTTAGCCCAGCCCTTTCTCGATTCCATTTCCTCGGAATCACTTTG
CACAAGCTATGTTAAAAGTCAGCCACACATTTATTTACACCAAGCCCTTCCTATACAAAATACA
ACTGCTGGGGCAGACAGTCTATACTCCCCCTCTGTAATTCTGGGTACCTCACAGATACAGAAGG
GACAATAAACCAGAATGTCATTACCAGCC

hide sequence

RefSeq Acc Id:

XM_017602159 ⟹ XP_017457648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,018,951 - 121,096,076 (-)	NCBI
mRatBN7.2	X	116,153,255 - 116,230,333 (-)	NCBI
Rnor_6.0	X	123,524,954 - 123,601,213 (-)	NCBI

Sequence:

show sequence

AGAGGTCGGGACGTACCACGGAGCCCAGTAGCGGCAGGGAGGGGGGGCGGAGGACGTGGTCACC
GAGGGGAGCCCCCGCCCCCTTCTCAGAGGCCGAGACTCCGGTTGCAGAGAGAACTGGAACTGGG
CTCGCCCTAGGGGAAGGCAGCGCGGCCAATCCGTCCCCTCCCCACACCTACTTTGAGGGGGTGG
GTGATAGAGGAGAGGTTGGGGTTGGAGCAGCGGTGAGGGGGCCCCTCCCTGGCACCTCCCTCCA
CCAGACTTGGTCGCGCCCGAAGTGTAACACTTTCTCTTTGTCGGAGGAGCTCTTCTGTTTCCTG
TGCAGCAGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGCG
GCCGATATAGCTCGCCAGGTGGTGCATTGAAACTACATACAAGACACGTGGAAAGAAGAAAAGG
GGATGGGGAACGGAGAGAGGAAGAAGGGGAAGGAAGGAAAAGGGAAACCATGCATAGATGCTCT
CTTGAAACGCATCCATCTGCATGACTTTTGCCCCAACAACTTCCTGGACAGATCCCCGTTAAAC
GAGACCAGATGGAGGCAGAGGCGAATTCAGGCTCCCAAGAGGGCAGTTGGGCATTCACCCAGAG
GCCTATGGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACAGCTTGCC
TGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGTGGGGGAG
ACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAAGGGGAGCCAA
CGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGGAGAGCAATGT
GGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAAGGAGGACAGC
TACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAGGAGCTGAAGA
TCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATTTCATTGCCCC
GACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAGTAAGGTGAAC
ATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATCA
AAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAGATGATGAGTC
GGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGGCAGCACAGAA
GAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACCGTGCAGGTTG
AAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCAACATGGAGGA
TCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCTGGAGGAGATG
GGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATATGAGGCGAAAA
GAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGTTTGTCCAGAG
AGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAGTTTGACCGT
CTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGTCTGGATGAGG
AAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGGGCTCTCAGGC
TGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAACTTTTTTTAACCTTGTCTTCAG
CAGCTGTGCTAAGTCTAAAGGAGAAGATTGCCATTATAGAAGAGTTAGTTAGGGCTCCATACTG
TCTCAAGCAAGAAACCAACCAGTCCCCCTCCCCTGCAACTGCGCACATATACACCACACTCAAC
AAGTGTACATGTGTCCCTGTGTCCAGGCGAGAAGCTCTCTTCTGACTTACATGGTGTTTCACAT
GGAATTGTCTTGTCCTAAACTCACAAGGCAGGAAAAGAATCATCAGACTGGAAATGGACCAAAT
GTAACCTCAGAGAGACAACAACAGGACCACTCACCCAGGTGTTAAGTGACTGGCAGGAGACCTC
AGCTGTGAGTGTGGAAGTGCTGTTCACAAGGTTTTGAGTTTGATGTTGTTTTCTAAAAAACAAT
TCTCTGGTTCAATGGGTTAACTGTCTTCAGACACTATTAAGCTGATTCTGAATCTGGAAGAGAA
AGTTGAGTGACATTTGCATCTTAAGCATTCACAGACTTTCTGCAGACCCCAGCAAAAGGGGGGA
GAAATGGAACTATTACCATTCAGCTGAAGAAAGACATGAGGGGGGCTTAAGCTTAGTTGAGAGC
AAAGTTTCTCCACACAAACTTCCAAGGGGCTTTGCGGGTTTCGCAAGAGGTTTCTGCTCAACTT
GGTATGTTGAAGGAGAGCTTTGATGGCGGTAAATCTGCCTTGAAATCAATGGCTTTCCTTACTC
TCTGAATACCATGTGAATGTGCTCTTTCCTATCCGTCCATACCACAAACACCAACATTCTGCTG
TCTTGTCTCTTGAGAGAGCCTCTTTGCATGTTTTCCAGAATCTCTGTTTGTTTTTCCTTTCTTC
TCTGTGGTTCTTTTTGCTGAAATGTGTGATCAGTCACTGCCCCTCTGGGGCTTTCATTCTCCAG
AAGATACATCCCAGAACCAGCACTGTTTAGCTCATTATCTTTCTAATGTCCATGTCAATTTTCA
ATAAAATTCAAAGAAATA

hide sequence

RefSeq Acc Id:

XM_017602161 ⟹ XP_017457650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,096,078 (-)	NCBI
mRatBN7.2	X	116,154,448 - 116,230,333 (-)	NCBI
Rnor_6.0	X	123,526,143 - 123,601,213 (-)	NCBI

Sequence:

show sequence

AGAGGTCGGGACGTACCACGGAGCCCAGTAGCGGCAGGGAGGGGGGGCGGAGGACGTGGTCACC
GAGGGGAGCCCCCGCCCCCTTCTCAGAGGCCGAGACTCCGGTTGCAGAGAGAACTGGAACTGGG
CTCGCCCTAGGGGAAGGCAGCGCGGCCAATCCGTCCCCTCCCCACACCTACTTTGAGGGGGTGG
GTGATAGAGGAGAGGTTGGGGTTGGAGCAGCGGTGAGGGGGCCCCTCCCTGGCACCTCCCTCCA
CCAGACTTGGTCGCGCCCGAAGTGTAACACTTTCTCTTTGTCGGAGGAGCTCTTCTGTTTCCTG
TGCAGCAGCTCCCGTTGTGGAGGCACCCGTAGCAGCCCTGGCGGACCAAGGAGCGATGGCAGCG
GCCGATATAGCTCGCCAGGTGGTGCATTGAAACTACATACAAGACACGTGGAAAGAAGAAAAGG
GGATGGGGAACGGAGAGAGGAAGAAGGGGAAGGAAGGAAAAGGGAAACCATGCATAGATGCTCT
CTTGAAACGCATCCATCTGCATGACTTTTGCCCCAACAACTTCCTGGACAGATCCCCGTTAAAC
GAGACCAGATGGAGGCAGAGGCGAATTCAGGCTCCCAAGAGGGCAGTTGGGCATTCACCCAGAG
GCCTATGGGGCGAAGACTGTCGAACTGTCCCCCTGGCTGGACATGTGGGGTTTGACAGCTTGCC
TGACCAGCTGGTGAATAAGTCAGTCAGCCAGGGCTTCTGCTTCAACATCCTGTGCGTGGGGGAG
ACAGGTTTGGGCAAGTCCACCCTCATGGATACCCTGTTCAACACCAAGTTTGAAGGGGAGCCAA
CGACTCACACACAGCCAGGTGTTCAGCTCCGGTCCAGTACCTACGACCTCCAGGAGAGCAATGT
GGGGTTGAAGCTCACAATTGTGAGCACTGTAGGCTTTGGGGACCAGATCAACAAGGAGGACAGC
TACAAGCCCATCGTGGAATTCATTGATGCTCAGTTCGAGGCCTACCTACAGGAGGAGCTGAAGA
TCCGGAGAGTACTGCACTCCTACCATGACTCCCGAATCCACGCCTGCTTGTATTTCATTGCCCC
GACAGGGCATTCGCTTAAGTCTCTGGACCTAGTAACCATGAAGAAGCTGGATAGTAAGGTGAAC
ATCATTCCCATCATTGCCAAGTCAGATGCCATTTCTAAGAGTGAGCTGGCAAAGTTCAAGATCA
AAATCACCAGTGAGCTTGTGAGCAATGGAGTCCAGATCTATCAGTTCCCCACAGATGATGAGTC
GGTGGCCGAGATCAATGGAACCATGAATGCCCACCTGCCGTTTGCTGTTGTTGGCAGCACAGAA
GAAGTGAAGATAGGGAACAAGATGATGCGAGCTCGGCAGTATCCTTGGGGGACCGTGCAGGTTG
AAAATGAGGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGAATCAACATGGAGGA
TCTGCGGGAGCAGACCCATGCCCGGCACTACGAATTGTACCGCCGCTGTAAGCTGGAGGAGATG
GGCTTCAAGGACACCGACCCTGACAGCAAACCATTCAGTTTACAGGAGACATATGAGGCGAAAA
GAAACGAGTTCCTGGGGGAGCTCCAGAAGAAAGAAGAGGAGATGAGACAGATGTTTGTCCAGAG
AGTCAAAGAGAAGGAAGCAGAGCTCAAGGAGGCTGAAAAAGAGCTGCATGAGAAGTTTGACCGT
CTGAAGAAACTGCACCAGGAGGAGAAGAAGAAGCTGGAAGATAAGAAGAAGTGTCTGGATGAGG
AAATGAATGCTTTCAAGCAGAGAAAGGCGGCAGCCGAGCTGCTCCAGTCTCAGGGCTCTCAGGC
TGGAGGCTCGCAGACTCTGAAAAGAGACAAAGAGAAGAAGAATTAACCCTGCTGTTTGCTGCAT
GCTGCATGACACCCAGGGTCCTGTAACCCATGGCTGTGTACTGAATAGTATGCCCTGCTACAGC
TGGACTGGACTCCACTTAGCCTTTTAAGCGAAGGTTCTTATTTTAACTGACAACTTTTTTTAAA
ATGGTGCCAGACAGCTGGGCCCTCCACCCCTGCTCTGGTACTTCAAGCATTTTGGTTTTTTTGT
TTTGTTTTGTTTTGTTTTTTGAGTTCTGCAACTTGCTTCTGCCTTCCAGTCCCACTGGCACGGA
CCATGACCTTCTTCTTTTTTCTTGTTATAAAGGTGGCTGTATGATCACTACCTCTAAAGAAATT
CAAGGTGATAATAAATTTACAGGCCTTCTGAACTGTTACGAAAAGGCAGGGGCCATTGTCTACA
GTCATAGTTAATAACTTAAACCTAAGACTAAGCCCAAAGCAGAACTAGTTAAAGGCAAGCAAGT
CTATGTGCGAACTTTCTCTTTTCTAGTTGGCAAAGAAGTGGTTTTGATGCGTACTGGCCAGCGG
ACAGAGGCAAGTACAGGGTGACAATGTGAAAGCATGTGGTTGTCCTTGAGGAAAGCCAACTGGA
AGGAGAGAATTTCAGGAAAACCTATACCTAGAGGCAAAACAAAACAAGTCACCACCAAGAACTG
AAAGCCCCAAAGCAGAATTCCCAAGTATCTCAGATACAATCAGCTGTCTGGGTCTCCTTGAGAA
AGGCTCCTTATTTGTAGCCATGGGGGTTTTTTTTGTGTGTGTGTTTGTTTGTTTGTTTTTAAAA
CAGGTTCTTACTATGTAGCCCTGACTGGCCTTGAAATCACAATGTAGACCAGGCTGGCCTGAAA
TTCACAGAGATTTGCCTGTCTGTATTTCCTGAGTGCTGGGGTTAAAGTGCCTTAGGGGTTTTAC
TTCACCTTTCCAGACTGCCAGAAAATATGGTCTTCCTTAAGAAGTACTCGTATTTTTAAATGAG
GCCTTTCCTTTGCATTTGTATATAAACTCTCTACTTGAGGCTGGAGGATCTCAAAATACTTCAC
AAGTATTTGAGCTACGCAACCTTCCAAAAGCAAGCAGAAATTGTACATAAAGTGAGGAGCTTTT
TAGTCAGCATGGCTGATATCCATTGACACGTAGAGAAATGAAGATTTCCAATTTCCTGTCTCTG
GGTTCCCAATCAAAAATCCAAGTATTTATGTATCTTCCTGGAGACAAGATTTTTTTTTGATGTT
CAGAAAAACCAGTGTTAGAAGACTCTTGAGGGTTTTCACATAGAAAAATAGTATAGGATGGGTA
GGCATAGGTGAAGAGAAGGCTCCAGGCCAGCTGCCATGATGCCGGATGATTAGTTAGCTGTATG
TAAGTCTTACAGAGGATCAGCTCCTGTAAGTCTGGACCAGGACCAGGCCAGTGTACATTTCACT
GGTGCAATGTGAAATCGGGGAACTCAGGTGGACAAAAAGGCAGTCGAACCTATTAAAAGATGAT
GCTAAATTTCATTGAGAAGTTCTTCCCCCTGTAAATGGAAAAGCTTATGTTTTTCTTCACTAGA
ATGTCTTTAATTAGTACAATTGTTACTAATTAAAAAAAATCCCTAGGTTCCTGGTTTGCTTCTA
ATGAAACAAAAACCACTCAATAGAAATGGTCTGTGCTGGGAAATCCAGACTCGAATGGAATGAC
TTCCTGAAATACACTCACACACACACACACACACACACACACACACACACACACACACACACAC
GCACGCATGCACACACCACGCACCCTTCATTTCTATTAAAGCCAAGAAGTCTGCTTTCCCCACC
TGGTTTGGATTTTTTTTTAAATCATTTGGCATTCACAGTTGGCTGTTAATGTGTGCTTATTTTT
AAATTAAAGCAAGATGCAATTAAA

hide sequence

RefSeq Acc Id:

XM_063280315 ⟹ XP_063136385

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,157,677 (-)	NCBI

RefSeq Acc Id:

XM_063280316 ⟹ XP_063136386

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,157,653 (-)	NCBI

RefSeq Acc Id:

XM_063280317 ⟹ XP_063136387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,022,492 - 121,096,196 (-)	NCBI

RefSeq Acc Id:

XM_063280318 ⟹ XP_063136388

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,018,951 - 121,096,196 (-)	NCBI

RefSeq Acc Id:

XM_063280319 ⟹ XP_063136389

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,096,196 (-)	NCBI

RefSeq Acc Id:

XM_063280320 ⟹ XP_063136390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	121,020,144 - 121,090,491 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001166900	(Get FASTA)	NCBI Sequence Viewer
	XP_006257525	(Get FASTA)	NCBI Sequence Viewer
	XP_017457646	(Get FASTA)	NCBI Sequence Viewer
	XP_017457647	(Get FASTA)	NCBI Sequence Viewer
	XP_017457648	(Get FASTA)	NCBI Sequence Viewer
	XP_017457650	(Get FASTA)	NCBI Sequence Viewer
	XP_063136385	(Get FASTA)	NCBI Sequence Viewer
	XP_063136386	(Get FASTA)	NCBI Sequence Viewer
	XP_063136387	(Get FASTA)	NCBI Sequence Viewer
	XP_063136388	(Get FASTA)	NCBI Sequence Viewer
	XP_063136389	(Get FASTA)	NCBI Sequence Viewer
	XP_063136390	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI69051	(Get FASTA)	NCBI Sequence Viewer
	EDM10831	(Get FASTA)	NCBI Sequence Viewer
	EDM10832	(Get FASTA)	NCBI Sequence Viewer
	EDM10833	(Get FASTA)	NCBI Sequence Viewer
	EDM10834	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000061494
	ENSRNOP00000061494.2
	ENSRNOP00000075809
	ENSRNOP00000075809.2
	ENSRNOP00000075833
	ENSRNOP00000075833.2
	ENSRNOP00000075880.2
	ENSRNOP00000081808.1
	ENSRNOP00000088464
	ENSRNOP00000088464.2

RefSeq Acc Id:

NP_001166900 ⟸ NM_001173429

- UniProtKB:

B5DFG5 (UniProtKB/TrEMBL), F1LRN3 (UniProtKB/TrEMBL), A0A9K3Y7T9 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAAADIARQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN
TKFEGEPTTHTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA
YLQEELKIRRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKS
ELAKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQY
PWGTVQVENEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSL
QETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLED
KKKCLDEEMNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKN

hide sequence

RefSeq Acc Id:	XP_006257525 ⟸ XM_006257463
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AA08 (UniProtKB/TrEMBL), A6JMH0 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAADIARQVGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFN TKFEGEPTTHTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEA YLQEELKIRRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKS ELAKFKIKITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQY PWGTVQVENEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSL QETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLED KKKCLDEEMNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKNNPWLCTE hide sequence

RefSeq Acc Id:	XP_017457648 ⟸ XM_017602159
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNGERKKGKEGKGKPCIDALLKRIHLHDFCPNNFLDRSPLNETRWRQRRIQAPKRAVGHSPRG LWGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPT THTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI RRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELAKFKIK ITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVE NEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKR NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLEDKKKCLDEE MNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKNFF hide sequence

RefSeq Acc Id:	XP_017457646 ⟸ XM_017602157
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNGERKKGKEGKGKPCIDALLKRIHLHDFCPNNFLDRSPLNETRWRQRRIQAPKRAVGHSPRG LWGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPT THTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI RRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELAKFKIK ITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVE NEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKR NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLEDKKKCLDEE MNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKNNPWLCTE hide sequence

RefSeq Acc Id:	XP_017457650 ⟸ XM_017602161
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNGERKKGKEGKGKPCIDALLKRIHLHDFCPNNFLDRSPLNETRWRQRRIQAPKRAVGHSPRG LWGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPT THTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI RRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELAKFKIK ITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVE NEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKR NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLEDKKKCLDEE MNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKN hide sequence

RefSeq Acc Id:	XP_017457647 ⟸ XM_017602158
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZSZ7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGNGERKKGKEGKGKPCIDALLKRIHLHDFCPNNFLDRSPLNETRWRQRRIQAPKRAVGHSPRG LWGEDCRTVPLAGHVGFDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPT THTQPGVQLRSSTYDLQESNVGLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKI RRVLHSYHDSRIHACLYFIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKSDAISKSELAKFKIK ITSELVSNGVQIYQFPTDDESVAEINGTMNAHLPFAVVGSTEEVKIGNKMMRARQYPWGTVQVE NEAHCDFVKLREMLIRINMEDLREQTHARHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKR NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKLEDKKKCLDEE MNAFKQRKAAAELLQSQGSQAGGSQTLKRDKEKKNLGFL hide sequence

Ensembl Acc Id:

ENSRNOP00000075754 ⟸ ENSRNOT00000092301

Ensembl Acc Id:

ENSRNOP00000075880 ⟸ ENSRNOT00000092408

Ensembl Acc Id:

ENSRNOP00000075833 ⟸ ENSRNOT00000092670

Ensembl Acc Id:

ENSRNOP00000075809 ⟸ ENSRNOT00000092546

Ensembl Acc Id:

ENSRNOP00000075771 ⟸ ENSRNOT00000092624

Ensembl Acc Id:

ENSRNOP00000061494 ⟸ ENSRNOT00000067942

Ensembl Acc Id:

ENSRNOP00000081808 ⟸ ENSRNOT00000119795

Ensembl Acc Id:

ENSRNOP00000088464 ⟸ ENSRNOT00000109309

RefSeq Acc Id:	XP_063136388 ⟸ XM_063280318
- Peptide Label:	isoform X7
- UniProtKB:	A0A0U1RRT8 (UniProtKB/TrEMBL), A6JMG9 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136385 ⟸ XM_063280315
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AA08 (UniProtKB/TrEMBL), A6JMH0 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136386 ⟸ XM_063280316
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6AA08 (UniProtKB/TrEMBL), A6JMH0 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136389 ⟸ XM_063280319
- Peptide Label:	isoform X8
- UniProtKB:	A0A9K3Y7T9 (UniProtKB/TrEMBL), B5DFG5 (UniProtKB/TrEMBL), F1LRN3 (UniProtKB/TrEMBL), A0A0U1RRN9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136390 ⟸ XM_063280320
- Peptide Label:	isoform X9
- UniProtKB:	A0A8I5ZSZ7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136387 ⟸ XM_063280317
- Peptide Label:	isoform X6
- UniProtKB:	A0A0U1RRN9 (UniProtKB/TrEMBL)

Protein Domains

Septin-type G

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0U1RRT8-F1-model_v2	AlphaFold	A0A0U1RRT8	1-432	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701985

Promoter ID:

EPDNEW_R12509

Type:

initiation region

Name:

Sept6_1

Description:

septin 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	123,600,924 - 123,600,984	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1585082	AgrOrtholog
BioCyc Gene	G2FUF-1301	BioCyc
Ensembl Genes	ENSRNOG00000043182	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067942	ENTREZGENE
	ENSRNOT00000067942.5	UniProtKB/TrEMBL
	ENSRNOT00000092408.3	UniProtKB/TrEMBL
	ENSRNOT00000092546	ENTREZGENE
	ENSRNOT00000092546.3	UniProtKB/TrEMBL
	ENSRNOT00000092670	ENTREZGENE
	ENSRNOT00000092670.3	UniProtKB/TrEMBL
	ENSRNOT00000109309	ENTREZGENE
	ENSRNOT00000109309.2	UniProtKB/TrEMBL
	ENSRNOT00000119795.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	G_SEPTIN_dom	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Septin	UniProtKB/TrEMBL
KEGG Report	rno:691335	UniProtKB/TrEMBL
NCBI Gene	691335	ENTREZGENE
PANTHER	SEPTIN	UniProtKB/TrEMBL
Pfam	Septin	UniProtKB/TrEMBL
PhenoGen	Septin6	PhenoGen
PIRSF	Septin	UniProtKB/TrEMBL
PROSITE	G_SEPTIN	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000043182	RatGTEx
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A0U1RRN9	ENTREZGENE
	A0A0U1RRT8	ENTREZGENE, UniProtKB/TrEMBL
	A0A0U1RRW2_RAT	UniProtKB/TrEMBL
	A0A0U1RS01_RAT	UniProtKB/TrEMBL
	A0A8I5ZSZ7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AA08	ENTREZGENE, UniProtKB/TrEMBL
	A0A9K3Y7T9	ENTREZGENE, UniProtKB/TrEMBL
	A6JMG9	ENTREZGENE, UniProtKB/TrEMBL
	A6JMH0	ENTREZGENE, UniProtKB/TrEMBL
	B5DFG5	ENTREZGENE, UniProtKB/TrEMBL
	F1LRN3	ENTREZGENE
UniProt Secondary	F1LRN3	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-08-05	Septin6	septin 6	Sept6	septin 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Sept6	septin 6	LOC691335	similar to septin 6	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-01-09	LOC691335	similar to septin 6	LOC682750	similar to Septin-6	Data merged from RGD:1595290	1643240	APPROVED
2006-11-20	LOC682750	similar to Septin-6			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-19	LOC691335	similar to septin 6			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message