Mthfsd (methenyltetrahydrofolate synthetase domain containing) - Rat Genome Database

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Gene: Mthfsd (methenyltetrahydrofolate synthetase domain containing) Rattus norvegicus
Analyze
Symbol: Mthfsd
Name: methenyltetrahydrofolate synthetase domain containing
RGD ID: 1584226
Description: Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Orthologous to human MTHFSD (methenyltetrahydrofolate synthetase domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC687539; similar to CG14648-PA, isoform A
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,072,952 - 66,086,917 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,056,560 - 66,086,925 (-)EnsemblGRCr8
mRatBN7.21949,164,266 - 49,178,233 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,167,183 - 49,178,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1955,955,528 - 55,969,449 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01956,639,266 - 56,653,192 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01958,853,735 - 58,867,640 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01953,025,526 - 53,036,559 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,026,294 - 53,034,734 (-)Ensemblrn6Rnor6.0
Rnor_5.01963,769,856 - 63,780,217 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1948,413,494 - 48,424,529 (-)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22658674   PMID:22681889  


Genomics

Comparative Map Data
Mthfsd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81966,072,952 - 66,086,917 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1966,056,560 - 66,086,925 (-)EnsemblGRCr8
mRatBN7.21949,164,266 - 49,178,233 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1949,167,183 - 49,178,232 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1955,955,528 - 55,969,449 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01956,639,266 - 56,653,192 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01958,853,735 - 58,867,640 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01953,025,526 - 53,036,559 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1953,026,294 - 53,034,734 (-)Ensemblrn6Rnor6.0
Rnor_5.01963,769,856 - 63,780,217 (-)NCBIRnor_5.0Rnor_5.0rn5
Celera1948,413,494 - 48,424,529 (-)NCBICelera
Cytogenetic Map19q12NCBI
MTHFSD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381686,530,186 - 86,555,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1686,530,178 - 86,555,235 (-)Ensemblhg38GRCh38
GRCh371686,563,792 - 86,588,841 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361685,121,283 - 85,146,342 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1670,864,746 - 70,889,806 (-)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1672,303,754 - 72,328,732 (-)NCBIHuRef
CHM1_11687,975,494 - 88,000,569 (-)NCBICHM1_1
T2T-CHM13v2.01692,598,486 - 92,623,551 (-)NCBIT2T-CHM13v2.0
Mthfsd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398121,818,367 - 121,835,152 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8121,818,367 - 121,835,131 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388121,091,628 - 121,108,413 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8121,091,628 - 121,108,392 (-)Ensemblmm10GRCm38
MGSCv378123,621,457 - 123,632,279 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368123,983,917 - 123,994,295 (-)NCBIMGSCv36mm8
Celera8125,315,508 - 125,326,393 (-)NCBICelera
Cytogenetic Map8E1NCBI
cM Map870.31NCBI
Mthfsd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555411,358,167 - 1,373,696 (-)Ensembl
ChiLan1.0NW_0049555411,358,167 - 1,372,833 (-)NCBIChiLan1.0ChiLan1.0
MTHFSD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21896,286,871 - 96,311,408 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116102,204,069 - 102,228,598 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01667,201,360 - 67,225,883 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11686,533,014 - 86,557,519 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1686,533,014 - 86,557,519 (-)EnsemblpanPan2panpan1.1
MTHFSD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1566,307,852 - 66,334,196 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl566,307,955 - 66,331,769 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha566,319,888 - 66,345,179 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0566,529,371 - 66,554,683 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl566,529,555 - 66,553,301 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1566,552,223 - 66,578,601 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0566,387,439 - 66,413,787 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0566,800,721 - 66,827,121 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Mthfsd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934926,492,201 - 26,505,770 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366412,247,221 - 2,262,259 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366412,245,752 - 2,259,989 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTHFSD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl62,561,212 - 2,586,626 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.162,552,110 - 2,593,795 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.262,767,377 - 2,788,902 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MTHFSD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1571,915,431 - 71,941,989 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl571,917,268 - 71,938,962 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660473,764,993 - 3,791,144 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mthfsd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247462,610,586 - 2,626,813 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247462,611,629 - 2,626,850 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Mthfsd
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11740,748,133 - 40,759,654 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:238
Count of miRNA genes:164
Interacting mature miRNAs:184
Transcripts:ENSRNOT00000071373, ENSRNOT00000075179
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631840Niddm38Non-insulin dependent diabetes mellitus QTL 383.86blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)191032907674246245Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)194622677874246245Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)193236531174246245Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)192409397369093973Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191083361874246245Rat
2303628Vencon9Ventilatory control QTL 90.005respiration trait (VT:0001943)minute ventilation (CMO:0000132)192318858668188586Rat
2313395Anxrr26Anxiety related response QTL 26aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)194438513474246245Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)193253961574246245Rat
5135224Leukc1Leukocyte quantity QTL 1eosinophil quantity (VT:0002602)blood eosinophil count (CMO:0000033)196124916174246245Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)193177788874246245Rat
1554318Bmd5Bone mineral density QTL 512.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)192318858668188586Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19219431774246245Rat
1549835Tcas7Tongue tumor susceptibility QTL 70.001tongue integrity trait (VT:0010553)squamous cell carcinoma of the head and neck tumor number (CMO:0001876)194172254674246245Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19219431774246245Rat

Markers in Region
BF405218  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21949,170,607 - 49,170,700 (+)MAPPERmRatBN7.2
Rnor_6.01953,028,949 - 53,029,041NCBIRnor6.0
Rnor_5.01963,773,279 - 63,773,371UniSTSRnor5.0
Celera1948,416,909 - 48,417,001UniSTS
RH 3.4 Map19696.5UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 90 59 6 354 190 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000071373   ⟹   ENSRNOP00000064613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,056,560 - 66,086,880 (-)Ensembl
mRatBN7.2 Ensembl1949,167,183 - 49,178,232 (-)Ensembl
Rnor_6.0 Ensembl1953,026,294 - 53,034,734 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099599   ⟹   ENSRNOP00000083580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,075,630 - 66,086,918 (-)Ensembl
mRatBN7.2 Ensembl1949,167,183 - 49,178,232 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137936   ⟹   ENSRNOP00000108744
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,072,952 - 66,086,925 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000157780   ⟹   ENSRNOP00000112367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1966,072,952 - 66,086,925 (-)Ensembl
RefSeq Acc Id: NM_001401041   ⟹   NP_001387970
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,072,952 - 66,086,880 (-)NCBI
mRatBN7.21949,164,266 - 49,178,196 (-)NCBI
RefSeq Acc Id: XM_039098339   ⟹   XP_038954267
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,075,871 - 66,086,917 (-)NCBI
mRatBN7.21949,164,266 - 49,178,233 (-)NCBI
RefSeq Acc Id: XM_039098340   ⟹   XP_038954268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,079,669 - 66,086,917 (-)NCBI
mRatBN7.21949,170,985 - 49,178,233 (-)NCBI
RefSeq Acc Id: XM_063278279   ⟹   XP_063134349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,075,871 - 66,086,845 (-)NCBI
RefSeq Acc Id: XM_063278280   ⟹   XP_063134350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,075,871 - 66,086,845 (-)NCBI
RefSeq Acc Id: XM_063278281   ⟹   XP_063134351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,075,871 - 66,084,989 (-)NCBI
RefSeq Acc Id: XM_063278282   ⟹   XP_063134352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81966,075,871 - 66,083,868 (-)NCBI
Ensembl Acc Id: ENSRNOP00000064613   ⟸   ENSRNOT00000071373
RefSeq Acc Id: XP_038954267   ⟸   XM_039098339
- Peptide Label: isoform X1
- UniProtKB: M0R5E8 (UniProtKB/TrEMBL),   A0A8I5ZVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038954268   ⟸   XM_039098340
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000083580   ⟸   ENSRNOT00000099599
RefSeq Acc Id: NP_001387970   ⟸   NM_001401041
- UniProtKB: A0A8I5ZVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134349   ⟸   XM_063278279
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134350   ⟸   XM_063278280
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZVM1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063134351   ⟸   XM_063278281
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063134352   ⟸   XM_063278282
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000108744   ⟸   ENSRNOT00000137936
Ensembl Acc Id: ENSRNOP00000112367   ⟸   ENSRNOT00000157780

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R5E8-F1-model_v2 AlphaFold M0R5E8 1-365 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584226 AgrOrtholog
BioCyc Gene G2FUF-5454 BioCyc
BioCyc Pathway 1CMET2-PWY [folate transformations III (E. coli)] BioCyc
BioCyc Pathway Image 1CMET2-PWY BioCyc
Ensembl Genes ENSRNOG00000046443 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071373.5 UniProtKB/TrEMBL
  ENSRNOT00000099599.2 UniProtKB/TrEMBL
  ENSRNOT00000137936 ENTREZGENE
  ENSRNOT00000137936.1 UniProtKB/TrEMBL
  ENSRNOT00000157780 ENTREZGENE
  ENSRNOT00000157780.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  3.40.50.10420 UniProtKB/TrEMBL
InterPro FTHF_cligase UniProtKB/TrEMBL
  FTHF_cligase-like_sf UniProtKB/TrEMBL
  NagB/RpiA_transferase-like UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene 687539 ENTREZGENE
PANTHER METHENYLTETRAHYDROFOLATE SYNTHASE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR13017 UniProtKB/TrEMBL
Pfam 5-FTHF_cyc-lig UniProtKB/TrEMBL
PhenoGen Mthfsd PhenoGen
RatGTEx ENSRNOG00000046443 RatGTEx
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF100950 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A8I5ZVM1 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0LN54_RAT UniProtKB/TrEMBL
  A0ABK0LWI4_RAT UniProtKB/TrEMBL
  M0R5E8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-16 Mthfsd  methenyltetrahydrofolate synthetase domain containing  LOC687539  similar to CG14648-PA, isoform A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC687539  similar to CG14648-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL