Nipsnap2 (nipsnap homolog 2) - Rat Genome Database

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Gene: Nipsnap2 (nipsnap homolog 2) Rattus norvegicus
Analyze
Symbol: Nipsnap2
Name: nipsnap homolog 2
RGD ID: 1566421
Description: Predicted to be involved in mitochondrion organization and oxidative phosphorylation. Predicted to be located in mitochondrial outer membrane. Predicted to be active in mitochondrion. Orthologous to human NIPSNAP2 (nipsnap homolog 2); INTERACTS WITH atrazine; bisphenol A; Brodifacoum.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Gbas; glioblastoma amplified sequence; LOC498174; protein NipSnap homolog 2; similar to NipSnap2 protein (Glioblastoma amplified sequence)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,542,171 - 32,580,345 (-)NCBIGRCr8
mRatBN7.21226,906,068 - 26,944,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,911,723 - 26,944,166 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,042,071 - 28,080,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,652,611 - 28,690,982 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,714,097 - 27,752,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,527,540 - 30,566,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,527,540 - 30,566,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,469,308 - 32,506,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,928,465 - 27,968,759 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,611,780 - 28,649,695 (-)NCBICelera
Cytogenetic Map12q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:18614015   PMID:19182904   PMID:20833797   PMID:20888800   PMID:22627147   PMID:25931508   PMID:26387735  


Genomics

Comparative Map Data
Nipsnap2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81232,542,171 - 32,580,345 (-)NCBIGRCr8
mRatBN7.21226,906,068 - 26,944,201 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1226,911,723 - 26,944,166 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1228,042,071 - 28,080,442 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01228,652,611 - 28,690,982 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01227,714,097 - 27,752,470 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01230,527,540 - 30,566,090 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1230,527,540 - 30,566,032 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01232,469,308 - 32,506,704 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41227,928,465 - 27,968,759 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1228,611,780 - 28,649,695 (-)NCBICelera
Cytogenetic Map12q13NCBI
NIPSNAP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38755,964,585 - 56,000,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl755,951,793 - 56,000,181 (+)EnsemblGRCh38hg38GRCh38
GRCh37756,032,278 - 56,067,872 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36755,999,790 - 56,035,365 (+)NCBINCBI36Build 36hg18NCBI36
Build 34755,806,504 - 55,842,080NCBI
Celera767,085,720 - 67,121,305 (+)NCBICelera
Cytogenetic Map7p11.2NCBI
HuRef755,859,717 - 55,881,780 (+)NCBIHuRef
CHM1_1756,035,332 - 56,070,906 (+)NCBICHM1_1
T2T-CHM13v2.0756,124,373 - 56,159,980 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2756,036,517 - 56,072,122 (+)NCBI
Nipsnap2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,802,080 - 129,835,391 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5129,802,127 - 129,835,391 (+)EnsemblGRCm39 Ensembl
GRCm385129,725,016 - 129,758,327 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5129,725,063 - 129,758,327 (+)EnsemblGRCm38mm10GRCm38
MGSCv375130,230,950 - 130,264,201 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365130,039,839 - 130,072,958 (+)NCBIMGSCv36mm8
Celera5126,767,493 - 126,802,122 (+)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map568.26NCBI
Nipsnap2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554568,176,168 - 8,195,576 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554568,176,171 - 8,195,576 (+)NCBIChiLan1.0ChiLan1.0
NIPSNAP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2660,816,887 - 60,852,541 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17109,141,625 - 109,177,269 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0756,577,763 - 56,613,417 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1757,002,007 - 57,036,333 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl757,002,001 - 57,036,333 (+)Ensemblpanpan1.1panPan2
NIPSNAP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.16451,568 - 485,354 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl6451,562 - 484,695 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha62,151,357 - 2,184,908 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.06255,334 - 288,887 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl6222,931 - 288,887 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.16199,323 - 232,868 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.06193,186 - 226,753 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.06363,919 - 397,685 (+)NCBIUU_Cfam_GSD_1.0
Nipsnap2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344126,079,131 - 126,108,317 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365437,928,217 - 7,969,914 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365437,928,250 - 7,957,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPSNAP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl316,882,643 - 16,941,739 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1316,910,589 - 16,941,767 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2317,204,598 - 17,220,135 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NIPSNAP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1212,773,970 - 2,810,977 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041179,985,129 - 180,022,510 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipsnap2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247408,176,656 - 8,209,029 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247408,176,682 - 8,207,790 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nipsnap2
457 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:55
Count of miRNA genes:47
Interacting mature miRNAs:55
Transcripts:ENSRNOT00000035621
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat
61404Bw120Body weight QTL 1205.1body mass (VT:0001259)body mass index (BMI) (CMO:0000105)121235161946669029Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121281238546669029Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121281238546669029Rat
1549902Bp269Blood pressure QTL 269arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121318273646669029Rat
1549912Bp268Blood pressure QTL 268arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)101318273646669029Rat
2302060Pia37Pristane induced arthritis QTL 376.10.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)121319815746669029Rat
61416Pia4Pristane induced arthritis QTL 48.4joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)121363552330827399Rat
61421Cia12Collagen induced arthritis QTL 124.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121363552335682913Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)121555082638478808Rat
2293684Bmd26Bone mineral density QTL 264.40.0002femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)121587265332974238Rat
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)121914436246669029Rat
737822Alc10Alcohol consumption QTL 102.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)121961087040218516Rat
5684888Pia42Pristane induced arthritis QTL 42joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961087042828880Rat
61324Eae5Experimental allergic encephalomyelitis QTL 514nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)121961087046669029Rat
1298081Cia25Collagen induced arthritis QTL 254.7joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)121961088935682913Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121983578938193007Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122032881946669029Rat
70169Eae13Experimental allergic encephalomyelitis QTL 130.032nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)122413920236638073Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)122423477731894213Rat

Markers in Region
AV006093  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,911,857 - 26,911,991 (+)MAPPERmRatBN7.2
Rnor_6.01230,533,326 - 30,533,459NCBIRnor6.0
Rnor_5.01232,475,094 - 32,475,227UniSTSRnor5.0
RGSC_v3.41227,962,835 - 27,962,968UniSTSRGSC3.4
Celera1228,617,568 - 28,617,701UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH142798  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,944,387 - 26,944,488 (+)MAPPERmRatBN7.2
Rnor_6.01230,566,240 - 30,566,340NCBIRnor6.0
Rnor_5.01232,506,868 - 32,506,968UniSTSRnor5.0
RGSC_v3.41227,928,140 - 27,928,240UniSTSRGSC3.4
Celera1228,649,922 - 28,650,022UniSTS
RH 3.4 Map12446.6UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH137104  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,911,814 - 26,912,015 (+)MAPPERmRatBN7.2
Rnor_6.01230,533,283 - 30,533,483NCBIRnor6.0
Rnor_5.01232,475,051 - 32,475,251UniSTSRnor5.0
RGSC_v3.41227,962,811 - 27,963,011UniSTSRGSC3.4
Celera1228,617,525 - 28,617,725UniSTS
RH 3.4 Map12452.5UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS
RH138684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21226,941,637 - 26,941,761 (+)MAPPERmRatBN7.2
Rnor_6.01230,563,491 - 30,563,614NCBIRnor6.0
Rnor_5.01232,504,119 - 32,504,242UniSTSRnor5.0
RGSC_v3.41227,930,866 - 27,930,989UniSTSRGSC3.4
Celera1228,647,171 - 28,647,294UniSTS
RH 3.4 Map12454.2UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map9q36UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 54 38 19 38 8 11 74 35 39 11 8
Low 3 3 3 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000035621   ⟹   ENSRNOP00000030538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,911,723 - 26,944,166 (-)Ensembl
Rnor_6.0 Ensembl1230,527,540 - 30,566,015 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000093378   ⟹   ENSRNOP00000076288
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1226,911,723 - 26,944,166 (-)Ensembl
Rnor_6.0 Ensembl1230,533,260 - 30,566,032 (-)Ensembl
RefSeq Acc Id: NM_001394370   ⟹   NP_001381299
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,547,819 - 32,580,303 (-)NCBI
mRatBN7.21226,911,716 - 26,944,201 (-)NCBI
RefSeq Acc Id: NR_172102
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,542,171 - 32,580,303 (-)NCBI
mRatBN7.21226,906,068 - 26,944,201 (-)NCBI
RefSeq Acc Id: XM_063271584   ⟹   XP_063127654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81232,547,824 - 32,580,345 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001381299 (Get FASTA)   NCBI Sequence Viewer  
  XP_063127654 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH86385 (Get FASTA)   NCBI Sequence Viewer  
  EDM13492 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030538.4
  ENSRNOP00000076288
  ENSRNOP00000076288.1
RefSeq Acc Id: ENSRNOP00000030538   ⟸   ENSRNOT00000035621
RefSeq Acc Id: ENSRNOP00000076288   ⟸   ENSRNOT00000093378
RefSeq Acc Id: NP_001381299   ⟸   NM_001394370
- UniProtKB: Q5RK08 (UniProtKB/TrEMBL),   F7FI24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127654   ⟸   XM_063271584
- Peptide Label: isoform X1
Protein Domains
NIPSNAP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RK08-F1-model_v2 AlphaFold Q5RK08 1-281 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698590
Promoter ID:EPDNEW_R9113
Type:initiation region
Name:Nipsnap2_1
Description:nipsnap homolog 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01230,566,028 - 30,566,088EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566421 AgrOrtholog
BioCyc Gene G2FUF-19496 BioCyc
Ensembl Genes ENSRNOG00000023919 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000035621.5 UniProtKB/TrEMBL
  ENSRNOT00000093378 ENTREZGENE
  ENSRNOT00000093378.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.100 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7302515 IMAGE-MGC_LOAD
InterPro Dimeric_a/b-barrel UniProtKB/TrEMBL
  NIPSNAP UniProtKB/TrEMBL
KEGG Report rno:498174 UniProtKB/TrEMBL
MGC_CLONE MGC:105528 IMAGE-MGC_LOAD
NCBI Gene 498174 ENTREZGENE
PANTHER NIPSNAP-RELATED UniProtKB/TrEMBL
  PROTEIN NIPSNAP HOMOLOG 2 UniProtKB/TrEMBL
Pfam NIPSNAP UniProtKB/TrEMBL
PhenoGen Nipsnap2 PhenoGen
RatGTEx ENSRNOG00000023919 RatGTEx
Superfamily-SCOP Dimer_A_B_barrel UniProtKB/TrEMBL
UniProt F7FI24 ENTREZGENE, UniProtKB/TrEMBL
  Q5RK08 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-27 Nipsnap2  nipsnap homolog 2  Gbas  glioblastoma amplified sequence  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Gbas  glioblastoma amplified sequence  LOC498174  similar to NipSnap2 protein (Glioblastoma amplified sequence)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498174  similar to NipSnap2 protein (Glioblastoma amplified sequence)      Symbol and Name status set to provisional 70820 PROVISIONAL