Advanced Search (OLGA)

Gene: Ccdc71 (coiled-coil domain containing 71) Rattus norvegicus

Analyze

Symbol:

Ccdc71

Name:

coiled-coil domain containing 71

RGD ID:

1566341

Description:

Orthologous to human CCDC71 (coiled-coil domain containing 71); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

coiled-coil domain-containing protein 71; MGC116171; similar to RIKEN cDNA 2600016J21

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCDC71 (coiled-coil domain containing 71)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ccdc71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccdc71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCDC71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CCDC71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccdc71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCDC71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCDC71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccdc71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ccdc71 (coiled-coil domain containing 71)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CCDC71 (coiled-coil domain containing 71)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ccdc71 (coiled-coil domain containing 71)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-87e7.4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	ccdc71	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ccdc71	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,025,192 - 118,040,143 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	118,003,244 - 118,046,209 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,146,650 - 109,161,749 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,146,359 - 109,165,216 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,777,987 - 114,781,895 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,977,320 - 112,981,228 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,819,964 - 110,823,872 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,236,933 - 117,251,573 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,246,376 - 117,250,280 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,581,513 - 116,596,143 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	108,452,922 - 108,456,827 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5-triiodo-L-thyronine (ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aristolochic acid A (ISO)

avobenzone (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

CGP 52608 (ISO)

chromium(6+) (ISO)

clofibrate (ISO)

coumarin (ISO)

Dibutyl phosphate (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

GSK-J4 (ISO)

iron dichloride (ISO)

nitrates (ISO)

ozone (ISO)

paracetamol (ISO)

potassium chloride (ISO)

potassium chromate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:23301040

Genomics

Comparative Map Data

Ccdc71
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,025,192 - 118,040,143 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	118,003,244 - 118,046,209 (+)	Ensembl				GRCr8
mRatBN7.2	8	109,146,650 - 109,161,749 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	109,146,359 - 109,165,216 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	114,777,987 - 114,781,895 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	112,977,320 - 112,981,228 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	110,819,964 - 110,823,872 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	117,236,933 - 117,251,573 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	117,246,376 - 117,250,280 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	116,581,513 - 116,596,143 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	108,452,922 - 108,456,827 (+)	ENTREZGENE		Celera
Cytogenetic Map	8	q32	NCBI

CCDC71
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	49,162,535 - 49,166,331 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	49,161,063 - 49,166,331 (-)	Ensembl			hg38	GRCh38
GRCh37	3	49,199,968 - 49,203,764 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	49,174,972 - 49,178,789 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	49,157,127 - 49,161,007 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	49,257,779 - 49,261,595 (-)	NCBI		HuRef
CHM1_1	3	49,152,733 - 49,156,550 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	49,190,603 - 49,194,399 (-)	NCBI		T2T-CHM13v2.0

Ccdc71
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	108,329,701 - 108,343,145 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	108,337,726 - 108,343,137 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	108,452,502 - 108,465,946 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	108,460,527 - 108,465,938 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	108,362,849 - 108,368,276 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	108,318,656 - 108,323,647 (+)	NCBI		MGSCv36	mm8
Celera	9	108,069,699 - 108,075,126 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.38	NCBI

Ccdc71
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	1,150,321 - 1,154,112 (-)	Ensembl
ChiLan1.0	NW_004955532	1,150,053 - 1,153,965 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC71
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	49,140,377 - 49,144,231 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	49,135,793 - 49,148,999 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	49,085,870 - 49,089,723 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	50,165,473 - 50,169,286 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2

CCDC71
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	40,031,573 - 40,036,895 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	40,033,839 - 40,035,416 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	39,949,674 - 39,955,182 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	40,388,365 - 40,393,873 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	20	39,755,226 - 39,763,688 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	40,158,743 - 40,164,252 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	40,439,014 - 40,444,522 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc71
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	64,097,306 - 64,102,537 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	859,274 - 860,656 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	857,932 - 862,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC71
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	31,767,495 - 31,771,218 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	31,763,802 - 31,771,260 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	34,998,036 - 35,001,786 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC71
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666041	156,513,054 - 156,517,623 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc71
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	3,175,143 - 3,176,528 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	3,173,882 - 3,179,251 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc71
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	99,781,227 - 99,794,177 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc71
143 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	224
Count of miRNA genes:	157
Interacting mature miRNAs:	184
Transcripts:	ENSRNOT00000074493
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	105462581	132782436	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	82352698	127352698	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	61019838	121662124	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	49849908	118871671	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	80768445	125768445	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	80768445	125768445	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	70041301	121080908	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	68690349	119799881	Rat
10450865	Bw175	Body weight QTL 175	4.1		total fat pad mass (VT:0015008)	adipose tissue molecular composition measurement (CMO:0000484)	8	84192326	129192326	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	103375781	129871912	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	102413464	132782436	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	55428333	127966348	Rat
634332	Pia18	Pristane induced arthritis QTL 18	4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	84192326	132782436	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	85348065	130348065	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	79394435	132782436	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	98145073	122898010	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	80768445	125768445	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	80768445	125768445	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	91340911	131690273	Rat

Markers in Region

UniSTS:236247

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	109,159,032 - 109,159,351 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	117,248,999 - 117,249,317	NCBI	Rnor6.0
Rnor_5.0	8	116,593,569 - 116,593,887	UniSTS	Rnor5.0
Celera	8	108,455,545 - 108,455,863	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	92	59	6	356	192	11	141	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC128721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000074493 ⟹ ENSRNOP00000065526

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,034,756 - 118,046,209 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,146,359 - 109,161,607 (+)	Ensembl
Rnor_6.0 Ensembl	8	117,246,376 - 117,250,280 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100156 ⟹ ENSRNOP00000097250

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,034,765 - 118,043,751 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,156,379 - 109,165,216 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102898 ⟹ ENSRNOP00000092360

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,024,726 - 118,043,910 (+)	Ensembl
mRatBN7.2 Ensembl	8	109,156,379 - 109,165,216 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134648 ⟹ ENSRNOP00000100619

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,003,244 - 118,041,762 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000150571 ⟹ ENSRNOP00000108532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	118,034,788 - 118,043,602 (+)	Ensembl

RefSeq Acc Id:

NM_001024904 ⟹ NP_001020075

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,034,951 - 118,038,856 (+)	NCBI
mRatBN7.2	8	109,156,410 - 109,160,315 (+)	NCBI
Rnor_6.0	8	117,246,376 - 117,250,281 (+)	NCBI
Rnor_5.0	8	116,581,513 - 116,596,143 (+)	NCBI
Celera	8	108,452,922 - 108,456,827 (+)	ENTREZGENE

Sequence:

show sequence

CGGAGGCGGCGCAGAGGTGCGTCCTGGGTCCCCGCGGCGGCGCCGGTACCAAGTGCTGGTTTGT
GGATGCCCAGGCAGATCTGCAGTGCCCAATGCCATGAGCATGGTAGTGCAGCATGTGGAGGAGA
AAGCTGTGCATTCGTGGTCACGCATCTCCACAGCAGGGAAGAAAGCCCTGGAAGAGGCCCTCCT
TGTGTTTAATCCCATGAGCCAGGATCTCAGTGCCACAGAGGCCCAGCTTGTGGCCTTCCTCCAG
GGTCTTCGAGATGATGGCTTCCAACCGACCATTCTTCGAAGTGGGGATGTCTATGGTTATAGTT
CATGTACAGCCAGCCCCCCCAGCCAGACAAAGCTACAAGCTCGTACCATCAACCCACCTGCCAC
GTCACTTCCTGCCAGGGCTCCCCAAACTGCTAAGTCAGTCCCTACAGGCCAGACCACCTTGCTC
CCTGTGCCACTGTCTGGCAGGCTGGCTAAAGGGTCCACACCAGCCCTTGCCAAGCACACTACCA
CTAACCTGCTGCTGAGCTCCCTGAAGCAGTCAAATGCCAGCAACACCAGTGGTACAACAGTAGG
CTTCCCTGCCCACCTCTATCCAGGCGTCTACCCCGCCATGCAGCTCTCTGTGGTCCTTGAAGCA
CTAGTCCCACTCAAGACTCCCTGCTTGGATGTTAAGCATAGGGCACAGTCATTGCAGCTGTCAC
TTGCAAAATCTTCCCTAAAACTGAGGAAAGGTTCAGGGAACCCACAGTCCAAAGCACCCAGAAG
AATCACAAGCAAGGGCCTCAAGTATCTGACTAGCAAAGGCCCTGGGGCTGGTCTCCGACGAGGT
GCTGGAACCCAGAGCAATGGCGCCCGAATGAAAGGGCGCTCTACCTTGGGCACCAAAACAGTCC
GGGGCAAGGCACCTCGAACCCTGACCAAAGCTGTTTGTGCTCGTGCCAGTGTGGCTCCAGCCAA
GACCAAGACAGTAAGGGTCAGGGCCAAAGTAAAGCAGGCCAAGCCCAAGGCAGCCAAAGCCAAA
GCCAAGGCCGCTGCGCTGAGGGGCAAGGCCAAAGACAAGGCAGTCCAGGCCAAGGCCAAAGCAG
CTCGGACCAAGCACAAGAAAAGGCCAAAGGGATATGTTCAGACCAGAACTGGAAGAACAAGCCT
GAAAAATAGCTCTGAGACTGTGGGGCAGAAGAGGAAGAAGGCTGAGGAGACCAAAGGTCTTCCT
CCTAAGAAGAGAGCACGGTGTGTACCCCGATCTAAGGCACGGCTGGGAACTGGAACAGCTAAAC
CTCAGAAGTCCCAGACCATAAAGGTAGACAGGAAGTGCTCAGACGATGAGGTTCGACAGTGTGC
CCAACAGATCCTCCGTGTGAATCTCTCTCCTGTAGTATTGCTCCAGCCATTGCTGCCAGTTTGA
TTCCATACTCCCCGTCCTGGGTCCTTGCCACAGTACTTGGGAGAAGAGTTGAGCTGTCCTTGTG
GCCAGCAGCAGTGTGCAGTGCTCACAACTGCAGCTTCCTGGACTCTGGGAACCCCCGGGACCCC
TGTGGTCACCAACATCCTTTCAGACACTGAGGGTTTGGGTGGGGTGGGTTGTGGGAGGGGTGTT
CTCATGGCTCAATGCACTGTGACTTGTTCTTCAAATTGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

hide sequence

RefSeq Acc Id:

XM_006243832 ⟹ XP_006243894

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,025,192 - 118,040,143 (+)	NCBI
mRatBN7.2	8	109,146,650 - 109,161,749 (+)	NCBI
Rnor_6.0	8	117,236,933 - 117,251,573 (+)	NCBI
Rnor_5.0	8	116,581,513 - 116,596,143 (+)	NCBI

Sequence:

show sequence

TGGACGTCCGCCCGACCAGGATTTAGGGTTCTACCTGGGGCGATGATAGAAATGAGGCAGCGGC
GAGCAACACAACACCGGTACCAAGTGCTGGTTTGTGGATGCCCAGGCAGATCTGCAGTGCCCAA
TGCCATGAGCATGGTAGTGCAGCATGTGGAGGAGAAAGCTGTGCATTCGTGGTCACGCATCTCC
ACAGCAGGGAAGAAAGCCCTGGAAGAGGCCCTCCTTGTGTTTAATCCCATGAGCCAGGATCTCA
GTGCCACAGAGGCCCAGCTTGTGGCCTTCCTCCAGGGTCTTCGAGATGATGGCTTCCAACCGAC
CATTCTTCGAAGTGGGGATGTCTATGGTTATAGTTCATGTACAGCCAGCCCCCCCAGCCAGACA
AAGCTACAAGCTCGTACCATCAACCCACCTGCCACGTCACTTCCTGCCAGGGCTCCCCAAACTG
CTAAGTCAGTCCCTACAGGCCAGACCACCTTGCTCCCTGTGCCACTGTCTGGCAGGCTGGCTAA
AGGGTCCACACCAGCCCTTGCCAAGCACACTACCACTAACCTGCTGCTGAGCTCCCTGAAGCAG
TCAAATGCCAGCAACACCAGTGGTACAACAGTAGGCTTCCCTGCCCACCTCTATCCAGGCGTCT
ACCCCGCCATGCAGCTCTCTGTGGTCCTTGAAGCACTAGTCCCACTCAAGACTCCCTGCTTGGA
TGTTAAGCATAGGGCACAGTCATTGCAGCTGTCACTTGCAAAATCTTCCCTAAAACTGAGGAAA
GGTTCAGGGAACCCACAGTCCAAAGCACCCAGAAGAATCACAAGCAAGGGCCTCAAGTATCTGA
CTAGCAAAGGCCCTGGGGCTGGTCTCCGACGAGGTGCTGGAACCCAGAGCAATGGCGCCCGAAT
GAAAGGGCGCTCTACCTTGGGCACCAAAACAGTCCGGGGCAAGGCACCTCGAACCCTGACCAAA
GCTGTTTGTGCTCGTGCCAGTGTGGCTCCAGCCAAGACCAAGACAGTAAGGGTCAGGGCCAAAG
TAAAGCAGGCCAAGCCCAAGGCAGCCAAAGCCAAAGCCAAGGCCGCTGCGCTGAGGGGCAAGGC
CAAAGACAAGGCAGTCCAGGCCAAGGCCAAAGCAGCTCGGACCAAGCACAAGAAAAGGCCAAAG
GGATATGTTCAGACCAGAACTGGAAGAACAAGCCTGAAAAATAGCTCTGAGACTGTGGGGCAGA
AGAGGAAGAAGGCTGAGGAGACCAAAGGTCTTCCTCCTAAGAAGAGAGCACGGTGTGTACCCCG
ATCTAAGGCACGGCTGGGAACTGGAACAGCTAAACCTCAGAAGTCCCAGACCATAAAGGTAGAC
AGGAAGTGCTCAGACGATGAGGTTCGACAGTGTGCCCAACAGATCCTCCGTGTGAATCTCTCTC
CTGTAGTATTGCTCCAGCCATTGCTGCCAGTTTGATTCCATACTCCCCGTCCTGGGTCCTTGCC
ACAGTACTTGGGAGAAGAGTTGAGCTGTCCTTGTGGCCAGCAGCAGTGTGCAGTGCTCACAACT
GCAGCTTCCTGGACTCTGGGAACCCCCGGGACCCCTGTGGTCACCAACATCCTTTCAGACACTG
AGGGTTTGGGTGGGGTGGGTTGTGGGAGGGGTGTTCTCATGGCTCAATGCACTGTGACTTGTTC
TTCAAATTGTATATCCACCGTTCATCTATCATACTTTATACCTTTCCGCCTTCCGGTCTCCCTG
CTCACCCTCCATGGTCTTATTGGTTGATTTTGGTGTGTGGGAGCTAGTGGCTGTCAGAAATCTA
GCAGCAGGCTTGGAGAGAGTGCCCTAGTAGCTTGAAGCAGGTCATTAATTTAAATGATATGGTG
AGGATGATGGAATGGTGCCCTCAGGCTTCTGGAGAGAGGTGGGGAAATTCTGGTGCTTGTTTCT
GTGAATGTGTGAGAGATCCCAAGGGGAGGGGCAGAGACACTCCTTGAGTGTCCCAGTTTTGAAC
CAGATGGGCCCCATTCAAAATTGTTTGCAGCTCAGTGGGAAATGCAGCACCAAGCAGGTTTTTA
GGCCAGGGAAAGAAGTCTTTGTGGTACTGCTCTCTAGAGGCCAGGCTTTAAGGTTTTGCCTGGG
CTTTTCTGGGGGGAGGGGACGTGCTTAAAAGACTTGAAGTGCCGCTTTTCTGCTAAGGTGACCA
ACCTCAATTTTCCCAGTTGGTAACAAGAGGTTAGGCTGGACCACAAAACCTTCCTAACTGTCCA
GAGACTTTTCTCTGTGGTAACTGGTGACAGAACCAAGGAGGCCTCTACCCTTACCTCAGCAGTG
CTTTCTGACTGATTTCTACAAACTCTGTCTTACTCTGGAGTCCAACCTCACCACGCCCCCTAAC
ATGGCCTGTGCACAGTGGACATTGTTGGTCCCTTCTGCTTTGGAGAAGCTGGGCCCTCAGTGGG
AGCAGCAGTTGAGGCTGGAAGACCGTGCTTAGGTAAAGAGCGAGCACGTCATCCTTGTACTTGG
GAATTAGAGTACGAGTTTGATGTCAGTATAAGCTACATAGTGAGACCCCCTCTGCCTGTCTTTG
GTTGTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTTGACTTTGTAG
TCCAGGCTGGCCTCAGACTCAAAGATCTGCCTGCCTCCGCCTCTGCCTCCGCCTCTGCCTCCGC
CTCTGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTCAAGCGCT
GGAATTAAAGGCATGGGCTACCAGACCAAGCAAGGGGAATGGCTTACTGGTTAAGAGGATTTAG
CTGCTTTTTCAGAAGACCCTGTTGTGGCTCCCAGGAAAGGCAGCTCACAAACGCCTTTTTCTGC
CTTCAGGGGTCTTACATCTTCTTACGGCTTCGGTGGTCACAGGCAGACAAACACACATACAAAT
AAATGTTTAAAAAAATAATAGCA

hide sequence

RefSeq Acc Id:

XM_039081903 ⟹ XP_038937831

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	118,034,794 - 118,040,143 (+)	NCBI
mRatBN7.2	8	109,156,365 - 109,161,749 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020075	(Get FASTA)	NCBI Sequence Viewer
	XP_006243894	(Get FASTA)	NCBI Sequence Viewer
	XP_038937831	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98020	(Get FASTA)	NCBI Sequence Viewer
	EDL77169	(Get FASTA)	NCBI Sequence Viewer
	EDL77170	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000092360.1
	ENSRNOP00000097250
	ENSRNOP00000097250.1
	ENSRNOP00000108532
GenBank Protein	Q4V7C4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001020075 ⟸ NM_001024904

- UniProtKB:

Q4V7C4 (UniProtKB/Swiss-Prot), A6I358 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSMVVQHVEEKAVHSWSRISTAGKKALEEALLVFNPMSQDLSATEAQLVAFLQGLRDDGFQPTI
LRSGDVYGYSSCTASPPSQTKLQARTINPPATSLPARAPQTAKSVPTGQTTLLPVPLSGRLAKG
STPALAKHTTTNLLLSSLKQSNASNTSGTTVGFPAHLYPGVYPAMQLSVVLEALVPLKTPCLDV
KHRAQSLQLSLAKSSLKLRKGSGNPQSKAPRRITSKGLKYLTSKGPGAGLRRGAGTQSNGARMK
GRSTLGTKTVRGKAPRTLTKAVCARASVAPAKTKTVRVRAKVKQAKPKAAKAKAKAAALRGKAK
DKAVQAKAKAARTKHKKRPKGYVQTRTGRTSLKNSSETVGQKRKKAEETKGLPPKKRARCVPRS
KARLGTGTAKPQKSQTIKVDRKCSDDEVRQCAQQILRVNLSPVVLLQPLLPV

hide sequence

RefSeq Acc Id:	XP_006243894 ⟸ XM_006243832
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2QWS1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MIEMRQRRATQHRYQVLVCGCPGRSAVPNAMSMVVQHVEEKAVHSWSRISTAGKKALEEALLVF NPMSQDLSATEAQLVAFLQGLRDDGFQPTILRSGDVYGYSSCTASPPSQTKLQARTINPPATSL PARAPQTAKSVPTGQTTLLPVPLSGRLAKGSTPALAKHTTTNLLLSSLKQSNASNTSGTTVGFP AHLYPGVYPAMQLSVVLEALVPLKTPCLDVKHRAQSLQLSLAKSSLKLRKGSGNPQSKAPRRIT SKGLKYLTSKGPGAGLRRGAGTQSNGARMKGRSTLGTKTVRGKAPRTLTKAVCARASVAPAKTK TVRVRAKVKQAKPKAAKAKAKAAALRGKAKDKAVQAKAKAARTKHKKRPKGYVQTRTGRTSLKN SSETVGQKRKKAEETKGLPPKKRARCVPRSKARLGTGTAKPQKSQTIKVDRKCSDDEVRQCAQQ ILRVNLSPVVLLQPLLPV hide sequence

Ensembl Acc Id:

ENSRNOP00000065526 ⟸ ENSRNOT00000074493

RefSeq Acc Id:	XP_038937831 ⟸ XM_039081903
- Peptide Label:	isoform X2
- UniProtKB:	Q4V7C4 (UniProtKB/Swiss-Prot), A6I358 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000097250 ⟸ ENSRNOT00000100156

Ensembl Acc Id:

ENSRNOP00000092360 ⟸ ENSRNOT00000102898

Ensembl Acc Id:

ENSRNOP00000100619 ⟸ ENSRNOT00000134648

Ensembl Acc Id:

ENSRNOP00000108532 ⟸ ENSRNOT00000150571

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q4V7C4-F1-model_v2	AlphaFold	Q4V7C4	1-436	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696302

Promoter ID:

EPDNEW_R6826

Type:

initiation region

Name:

Ccdc71_1

Description:

coiled-coil domain containing 71

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	117,246,356 - 117,246,416	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1566341	AgrOrtholog
BioCyc Gene	G2FUF-29140	BioCyc
Ensembl Genes	ENSRNOG00000048718	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000100156	ENTREZGENE
	ENSRNOT00000100156.1	UniProtKB/Swiss-Prot
	ENSRNOT00000102898.1	UniProtKB/Swiss-Prot
	ENSRNOT00000150571	ENTREZGENE
IMAGE_CLONE	IMAGE:7455232	IMAGE-MGC_LOAD
InterPro	Ccdc71/71L	UniProtKB/Swiss-Prot
KEGG Report	rno:498678	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:116171	IMAGE-MGC_LOAD
NCBI Gene	498678	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 71	UniProtKB/Swiss-Prot
	PTHR14484	UniProtKB/Swiss-Prot
Pfam	CCDC71L	UniProtKB/Swiss-Prot
PhenoGen	Ccdc71	PhenoGen
RatGTEx	ENSRNOG00000048718	RatGTEx
UniProt	A0A8L2QWS1	ENTREZGENE, UniProtKB/TrEMBL
	A6I358	ENTREZGENE, UniProtKB/TrEMBL
	CCD71_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Ccdc71	coiled-coil domain containing 71	MGC116171	similar to RIKEN cDNA 2600016J21	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	MGC116171	similar to RIKEN cDNA 2600016J21			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message