Snu13l1 (small nuclear ribonucleoprotein 13 like 1) - Rat Genome Database

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Gene: Snu13l1 (small nuclear ribonucleoprotein 13 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Snu13l1
Name: small nuclear ribonucleoprotein 13 like 1
RGD ID: 1566078
Description: Predicted to enable box C/D sno(s)RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome and ribosome biogenesis. Predicted to be located in nucleolus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; box C/D methylation guide snoRNP complex; and spliceosomal complex. Orthologous to human SNU13 (small nuclear ribonucleoprotein 13); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; .
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC363514; NHP2-like protein 1; RGD1566078; similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1); similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X155,666,366 - 155,666,788 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX155,666,381 - 155,666,767 (-)EnsemblGRCr8
mRatBN7.2X150,624,087 - 150,624,525 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX150,624,087 - 150,624,473 (-)EnsemblmRatBN7.2
Rnor_6.0X152,781,177 - 152,781,621 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01148,511,967 - 148,512,421 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X158,765,373 - 158,765,759 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1131,589,498 - 131,589,952 (-)NCBICelera
Cytogenetic MapXq37NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:41
Count of miRNA genes:39
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000013187
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat


Expression

RNA-SEQ Expression

ectoderm
nervous system
sensory system
visual system
1 1 1 1

Sequence


RefSeq Acc Id: XM_039100614   ⟹   XP_038956542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X155,666,366 - 155,666,788 (-)NCBI
mRatBN7.2X150,624,087 - 150,624,525 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038956542 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000074898
  ENSRNOP00000074898.1
RefSeq Acc Id: XP_038956542   ⟸   XM_039100614
- UniProtKB: H7C5X3 (UniProtKB/TrEMBL),   A6HT43 (UniProtKB/TrEMBL)
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H7C5X3-F1-model_v2 AlphaFold H7C5X3 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566078 AgrOrtholog
BioCyc Gene G2FUF-697 BioCyc
Ensembl Genes ENSRNOG00000005681 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007487 ENTREZGENE
  ENSRNOT00000007487.6 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro eL8_RNA-proc_assembly UniProtKB/TrEMBL
  H/ACA_rnp_Nhp2_euk UniProtKB/TrEMBL
  L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_L7Ae/L8/Nhp2 UniProtKB/TrEMBL
  Ribosomal_L7Ae_CS UniProtKB/TrEMBL
NCBI Gene 363514 ENTREZGENE
PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Snu13l1 PhenoGen
PRINTS L7ARS6FAMILY UniProtKB/TrEMBL
  NUCLEARHMG UniProtKB/TrEMBL
PROSITE RIBOSOMAL_L7AE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005681 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A6HT43 ENTREZGENE, UniProtKB/TrEMBL
  H7C5X3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Snu13l1  small nuclear ribonucleoprotein 13 like 1  RGD1566078  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1566078  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1)   RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-10 RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) (Sperm specific antigen 1) (predicted)    similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1566078_predicted  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1) (predicted)  LOC363514  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363514  similar to NHP2-like protein 1 (High mobility group-like nuclear protein 2 homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein) (Sperm specific antigen 1) (Fertilization antigen 1) (FA-1)      Symbol and Name status set to provisional 70820 PROVISIONAL