Filip1l (filamin A interacting protein 1-like) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Filip1l (filamin A interacting protein 1-like) Rattus norvegicus
Analyze
Symbol: Filip1l
Name: filamin A interacting protein 1-like
RGD ID: 1565927
Description: Predicted to be involved in protein localization to actin cytoskeleton. Predicted to act upstream of or within several processes, including hindgut development; proteasomal protein catabolic process; and protein secretion. Predicted to be active in actin cytoskeleton and centrosome. Orthologous to human FILIP1L (filamin A interacting protein 1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: filamin A-interacting protein 1-like; LOC304020; RGD1565927; similar to 4631422O05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,467 - 56,646,422 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1156,410,582 - 56,646,402 (-)EnsemblGRCr8
mRatBN7.21142,937,353 - 43,177,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)EnsemblmRatBN7.2
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)Ensemblrn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ampicillin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethylbenzene  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methylmercury chloride  (EXP,ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (EXP,ISO)
monoethyl phthalate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
nitrates  (ISO)
O-methyleugenol  (ISO)
o-xylene  (ISO)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
toluene  (EXP,ISO)
topotecan  (EXP)
trichloroethene  (EXP,ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
zearalenone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Filip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,467 - 56,646,422 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1156,410,582 - 56,646,402 (-)EnsemblGRCr8
mRatBN7.21142,937,353 - 43,177,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)EnsemblmRatBN7.2
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)Ensemblrn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
FILIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38399,828,811 - 100,114,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl399,828,811 - 100,114,513 (-)Ensemblhg38GRCh38
GRCh37399,547,655 - 99,833,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,034,678 - 101,316,039 (-)NCBIBuild 36Build 36hg18NCBI36
Celera397,942,485 - 98,223,977 (-)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef396,920,239 - 97,201,792 (-)NCBIHuRef
CHM1_1399,515,018 - 99,796,400 (-)NCBICHM1_1
T2T-CHM13v2.03102,533,856 - 102,819,829 (-)NCBIT2T-CHM13v2.0
Filip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,173,376 - 57,393,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1657,173,456 - 57,393,489 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381657,353,277 - 57,572,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,353,093 - 57,573,126 (+)Ensemblmm10GRCm38
MGSCv371657,353,390 - 57,572,917 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361657,274,635 - 57,495,076 (+)NCBIMGSCv36mm8
Celera1657,679,629 - 57,898,970 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.22NCBI
Filip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554271,365,112 - 1,471,901 (-)Ensembl
ChiLan1.0NW_0049554271,386,163 - 1,641,985 (-)NCBIChiLan1.0ChiLan1.0
FILIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2297,769,602 - 97,876,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1397,774,386 - 97,881,597 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0396,941,501 - 97,207,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13103,609,631 - 103,890,638 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3103,609,631 - 103,707,488 (-)EnsemblpanPan2panpan1.1
FILIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,449,932 - 6,745,186 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,453,854 - 6,744,896 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha336,606,440 - 6,900,762 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0336,589,197 - 6,883,758 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,597,029 - 6,883,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1336,474,108 - 6,771,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,524,843 - 6,819,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,851,192 - 7,149,431 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Filip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602150,265,282 - 150,526,111 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366303,326,294 - 3,406,247 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366303,162,654 - 3,426,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,890,433 - 159,185,774 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113158,889,362 - 159,187,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,935,647 - 168,939,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,959,751 - 81,044,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2280,960,261 - 81,065,200 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604185,513,486 - 85,615,015 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Filip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Filip1l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1441,672,042 - 41,675,192 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Filip1l
1056 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000046383
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
11528648Bss118Bone structure and strength QTL 1186.6582e-07femur strength trait (VT:0010010)femur ultimate displacement (CMO:0002719)115410798756845449Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)115441539196071021Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)115107102196071021Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
D11Got38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,140 - 42,978,390 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,378 - 45,075,627NCBIRnor6.0
Rnor_5.01148,271,341 - 48,271,590UniSTSRnor5.0
RH 3.4 Map11325.9RGD
RH 3.4 Map11325.9UniSTS
RH 2.0 Map11290.5RGD
Cytogenetic Map11q12UniSTS
D11Got41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,150,411 - 43,150,624 (+)MAPPERmRatBN7.2
Rnor_6.01145,248,275 - 45,248,487NCBIRnor6.0
Rnor_6.01145,597,574 - 45,597,786NCBIRnor6.0
Rnor_5.01148,786,968 - 48,787,180UniSTSRnor5.0
Rnor_5.01148,443,978 - 48,444,190UniSTSRnor5.0
RGSC_v3.41143,984,975 - 43,985,187RGDRGSC3.4
RGSC_v3.41143,984,975 - 43,985,187UniSTSRGSC3.4
Celera1142,944,755 - 42,944,967UniSTS
RGSC_v3.11144,042,564 - 44,042,776RGD
RH 3.4 Map11319.2RGD
RH 3.4 Map11319.2UniSTS
RH 2.0 Map11306.8RGD
Cytogenetic Map11q12UniSTS
D11Uwm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,119 - 42,978,261 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,357 - 45,075,498NCBIRnor6.0
Rnor_5.01148,271,320 - 48,271,461UniSTSRnor5.0
Cytogenetic Map11q12UniSTS
BE110684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,092,519 - 43,092,616 (+)MAPPERmRatBN7.2
Rnor_6.01145,190,571 - 45,190,667NCBIRnor6.0
Rnor_5.01148,386,274 - 48,386,370UniSTSRnor5.0
RGSC_v3.41143,926,947 - 43,927,043UniSTSRGSC3.4
Celera1142,886,985 - 42,887,081UniSTS
RH 3.4 Map11320.8UniSTS
Cytogenetic Map11q12UniSTS
BI293688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,994,151 - 42,994,336 (+)MAPPERmRatBN7.2
Rnor_6.01145,091,379 - 45,091,563NCBIRnor6.0
Rnor_5.01148,287,082 - 48,287,266UniSTSRnor5.0
RGSC_v3.41143,827,085 - 43,827,269UniSTSRGSC3.4
Celera1142,788,776 - 42,788,960UniSTS
RH 3.4 Map11330.8UniSTS
Cytogenetic Map11q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046383   ⟹   ENSRNOP00000045927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1156,410,582 - 56,646,402 (-)Ensembl
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)Ensembl
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106192   ⟹   ENSRNOP00000091140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1156,486,532 - 56,646,402 (-)Ensembl
mRatBN7.2 Ensembl1143,017,387 - 43,177,415 (-)Ensembl
RefSeq Acc Id: NM_001427234   ⟹   NP_001414163
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,428,693 - 56,646,402 (-)NCBI
RefSeq Acc Id: XM_017598112   ⟹   XP_017453601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,646,422 (-)NCBI
mRatBN7.21142,937,353 - 43,177,085 (-)NCBI
Rnor_6.01145,039,488 - 45,275,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088830   ⟹   XP_038944758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,411,596 - 56,646,420 (-)NCBI
mRatBN7.21142,942,546 - 43,177,085 (-)NCBI
RefSeq Acc Id: XM_063270563   ⟹   XP_063126633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,452,899 (-)NCBI
RefSeq Acc Id: XM_063270564   ⟹   XP_063126634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,450,879 (-)NCBI
RefSeq Acc Id: XP_017453601   ⟸   XM_017598112
- Peptide Label: isoform X1
- UniProtKB: D4A900 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000045927   ⟸   ENSRNOT00000046383
RefSeq Acc Id: XP_038944758   ⟸   XM_039088830
- Peptide Label: isoform X2
- UniProtKB: D4A900 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000091140   ⟸   ENSRNOT00000106192
RefSeq Acc Id: XP_063126633   ⟸   XM_063270563
- Peptide Label: isoform X3
- UniProtKB: A6IQM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126634   ⟸   XM_063270564
- Peptide Label: isoform X3
- UniProtKB: A6IQM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001414163   ⟸   NM_001427234
- UniProtKB: D4A900 (UniProtKB/TrEMBL)
Protein Domains
Cortactin-binding protein-2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A900-F1-model_v2 AlphaFold D4A900 1-1186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565927 AgrOrtholog
BioCyc Gene G2FUF-21545 BioCyc
Ensembl Genes ENSRNOG00000001645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046383 ENTREZGENE
  ENSRNOT00000046383.6 UniProtKB/TrEMBL
  ENSRNOT00000106192.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Cortactin-Actin_Reg UniProtKB/TrEMBL
  Cortactin-binding_protein-2_N UniProtKB/TrEMBL
NCBI Gene 304020 ENTREZGENE
PANTHER FILAMIN A-INTERACTING PROTEIN 1-LIKE UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/TrEMBL
PhenoGen Filip1l PhenoGen
RatGTEx ENSRNOG00000001645 RatGTEx
UniProt A0A8I6AER4_RAT UniProtKB/TrEMBL
  A6IQM5 ENTREZGENE, UniProtKB/TrEMBL
  D4A900 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Filip1l   filamin A interacting protein 1-like   RGD1565927  similar to 4631422O05Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565927  similar to 4631422O05Rik protein   RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  LOC304020  similar to 4631422O05Rik protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304020  similar to 4631422O05Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL