Filip1l (filamin A interacting protein 1-like) - Rat Genome Database

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Gene: Filip1l (filamin A interacting protein 1-like) Rattus norvegicus
Analyze
Symbol: Filip1l
Name: filamin A interacting protein 1-like
RGD ID: 1565927
Description: Orthologous to human FILIP1L (filamin A interacting protein 1 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: filamin A-interacting protein 1-like; LOC304020; RGD1565927; similar to 4631422O05Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,467 - 56,646,422 (-)NCBIGRCr8
mRatBN7.21142,937,353 - 43,177,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-azacytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
amitrole  (EXP)
ampicillin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
avobenzone  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
bucladesine  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (EXP,ISO)
caffeine  (EXP)
calcitriol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cobalt dichloride  (EXP)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
DDT  (EXP)
dibutyl phthalate  (EXP,ISO)
dichloromethane  (ISO)
diethylstilbestrol  (EXP)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
Enterolactone  (ISO)
ethylbenzene  (ISO)
gentamycin  (EXP)
hydrogen peroxide  (ISO)
leflunomide  (ISO)
lipopolysaccharide  (ISO)
malathion  (ISO)
medroxyprogesterone acetate  (ISO)
methapyrilene  (ISO)
methimazole  (EXP)
methoxyacetic acid  (EXP)
methylmercury chloride  (EXP,ISO)
Monobutylphthalate  (EXP)
N-acetyl-L-cysteine  (ISO)
N-Nitrosopyrrolidine  (ISO)
nickel sulfate  (ISO)
O-methyleugenol  (ISO)
o-xylene  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinolin-8-ol  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thioacetamide  (EXP)
toluene  (EXP,ISO)
topotecan  (EXP)
trichloroethene  (EXP,ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
valproic acid  (ISO)
valsartan  (ISO)
zearalenone  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Filip1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81156,403,467 - 56,646,422 (-)NCBIGRCr8
mRatBN7.21142,937,353 - 43,177,085 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01145,039,488 - 45,275,141 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01148,252,744 - 48,470,833 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41143,788,676 - 43,859,932 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1142,737,152 - 42,971,618 (-)NCBICelera
Cytogenetic Map11q12NCBI
FILIP1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38399,828,811 - 100,114,501 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl399,828,811 - 100,114,513 (-)EnsemblGRCh38hg38GRCh38
GRCh37399,547,655 - 99,833,345 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363101,034,678 - 101,316,039 (-)NCBINCBI36Build 36hg18NCBI36
Celera397,942,485 - 98,223,977 (-)NCBICelera
Cytogenetic Map3q12.1NCBI
HuRef396,920,239 - 97,201,792 (-)NCBIHuRef
CHM1_1399,515,018 - 99,796,400 (-)NCBICHM1_1
T2T-CHM13v2.03102,533,856 - 102,819,829 (-)NCBIT2T-CHM13v2.0
Filip1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391657,173,376 - 57,393,167 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1657,173,456 - 57,393,489 (+)EnsemblGRCm39 Ensembl
GRCm381657,353,277 - 57,572,804 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1657,353,093 - 57,573,126 (+)EnsemblGRCm38mm10GRCm38
MGSCv371657,353,390 - 57,572,917 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361657,274,635 - 57,495,076 (+)NCBIMGSCv36mm8
Celera1657,679,629 - 57,898,970 (+)NCBICelera
Cytogenetic Map16C1.1NCBI
cM Map1634.22NCBI
Filip1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554271,365,112 - 1,471,901 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554271,386,163 - 1,641,985 (-)NCBIChiLan1.0ChiLan1.0
FILIP1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2297,769,602 - 97,876,774 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1397,774,386 - 97,881,597 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0396,941,501 - 97,207,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13103,609,631 - 103,890,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3103,609,631 - 103,707,488 (-)Ensemblpanpan1.1panPan2
FILIP1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1336,449,932 - 6,745,186 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl336,453,854 - 6,744,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha336,606,440 - 6,900,762 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0336,589,197 - 6,883,758 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl336,597,029 - 6,883,475 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1336,474,108 - 6,771,924 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0336,524,843 - 6,819,493 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0336,851,192 - 7,149,431 (-)NCBIUU_Cfam_GSD_1.0
Filip1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602150,265,282 - 150,526,111 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366303,326,294 - 3,406,247 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366303,162,654 - 3,426,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FILIP1L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13158,890,433 - 159,185,774 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113158,889,362 - 159,187,491 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213168,935,647 - 168,939,003 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FILIP1L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12280,959,751 - 81,044,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2280,960,261 - 81,065,200 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604185,513,486 - 85,615,015 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Filip1l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462478913,188,588 - 13,492,823 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Filip1l
797 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:33
Count of miRNA genes:30
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000046383
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)112295940367959403Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)112328045668280456Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)112328045668280456Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)112328045668280456Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)112952841860324829Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
2298551Neuinf10Neuroinflammation QTL 103.7nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)113123913478851519Rat
70180BpQTLcluster10Blood pressure QTL cluster 103.19arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)113491804179918041Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat

Markers in Region
D11Got38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,140 - 42,978,390 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,378 - 45,075,627NCBIRnor6.0
Rnor_5.01148,271,341 - 48,271,590UniSTSRnor5.0
RH 3.4 Map11325.9RGD
RH 3.4 Map11325.9UniSTS
RH 2.0 Map11290.5RGD
Cytogenetic Map11q12UniSTS
D11Got41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,150,411 - 43,150,624 (+)MAPPERmRatBN7.2
Rnor_6.01145,248,275 - 45,248,487NCBIRnor6.0
Rnor_6.01145,597,574 - 45,597,786NCBIRnor6.0
Rnor_5.01148,786,968 - 48,787,180UniSTSRnor5.0
Rnor_5.01148,443,978 - 48,444,190UniSTSRnor5.0
RGSC_v3.41143,984,975 - 43,985,187RGDRGSC3.4
RGSC_v3.41143,984,975 - 43,985,187UniSTSRGSC3.4
RGSC_v3.11144,042,564 - 44,042,776RGD
Celera1142,944,755 - 42,944,967UniSTS
RH 3.4 Map11319.2RGD
RH 3.4 Map11319.2UniSTS
RH 2.0 Map11306.8RGD
Cytogenetic Map11q12UniSTS
D11Uwm2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,978,119 - 42,978,261 (+)MAPPERmRatBN7.2
Rnor_6.01145,075,357 - 45,075,498NCBIRnor6.0
Rnor_5.01148,271,320 - 48,271,461UniSTSRnor5.0
Cytogenetic Map11q12UniSTS
BE110684  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21143,092,519 - 43,092,616 (+)MAPPERmRatBN7.2
Rnor_6.01145,190,571 - 45,190,667NCBIRnor6.0
Rnor_5.01148,386,274 - 48,386,370UniSTSRnor5.0
RGSC_v3.41143,926,947 - 43,927,043UniSTSRGSC3.4
Celera1142,886,985 - 42,887,081UniSTS
RH 3.4 Map11320.8UniSTS
Cytogenetic Map11q12UniSTS
BI293688  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21142,994,151 - 42,994,336 (+)MAPPERmRatBN7.2
Rnor_6.01145,091,379 - 45,091,563NCBIRnor6.0
Rnor_5.01148,287,082 - 48,287,266UniSTSRnor5.0
RGSC_v3.41143,827,085 - 43,827,269UniSTSRGSC3.4
Celera1142,788,776 - 42,788,960UniSTS
RH 3.4 Map11330.8UniSTS
Cytogenetic Map11q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 42 4 15 8 10 19 37 11 8
Low 1 53 41 4 41 1 74 16 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008768657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776557 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000046383   ⟹   ENSRNOP00000045927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1142,940,467 - 43,177,415 (-)Ensembl
Rnor_6.0 Ensembl1145,039,461 - 45,124,423 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106192   ⟹   ENSRNOP00000091140
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1143,017,387 - 43,177,415 (-)Ensembl
RefSeq Acc Id: NM_001427234   ⟹   NP_001414163
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,428,693 - 56,646,402 (-)NCBI
RefSeq Acc Id: XM_017598112   ⟹   XP_017453601
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,646,422 (-)NCBI
mRatBN7.21142,937,353 - 43,177,085 (-)NCBI
Rnor_6.01145,039,488 - 45,275,141 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039088830   ⟹   XP_038944758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,411,596 - 56,646,420 (-)NCBI
mRatBN7.21142,942,546 - 43,177,085 (-)NCBI
RefSeq Acc Id: XM_063270563   ⟹   XP_063126633
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,452,899 (-)NCBI
RefSeq Acc Id: XM_063270564   ⟹   XP_063126634
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81156,403,467 - 56,450,879 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_017453601   ⟸   XM_017598112
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000045927   ⟸   ENSRNOT00000046383
RefSeq Acc Id: XP_038944758   ⟸   XM_039088830
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000091140   ⟸   ENSRNOT00000106192
RefSeq Acc Id: XP_063126633   ⟸   XM_063270563
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126634   ⟸   XM_063270564
- Peptide Label: isoform X3
RefSeq Acc Id: NP_001414163   ⟸   NM_001427234
Protein Domains
Cortactin-binding protein-2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A900-F1-model_v2 AlphaFold D4A900 1-1186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565927 AgrOrtholog
BioCyc Gene G2FUF-21545 BioCyc
Ensembl Genes ENSRNOG00000001645 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000046383.5 UniProtKB/TrEMBL
  ENSRNOT00000106192.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.1700 UniProtKB/TrEMBL
InterPro Cortactin-binding_protein-2_N UniProtKB/TrEMBL
NCBI Gene 304020 ENTREZGENE
PANTHER FILAMIN A-INTERACTING PROTEIN 1-LIKE UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/TrEMBL
Pfam CortBP2 UniProtKB/TrEMBL
PhenoGen Filip1l PhenoGen
RatGTEx ENSRNOG00000001645 RatGTEx
UniProt A0A8I6AER4_RAT UniProtKB/TrEMBL
  D4A900_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-05-25 Filip1l   filamin A interacting protein 1-like   RGD1565927  similar to 4631422O05Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565927  similar to 4631422O05Rik protein   RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565927_predicted  similar to 4631422O05Rik protein (predicted)  LOC304020  similar to 4631422O05Rik protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304020  similar to 4631422O05Rik protein      Symbol and Name status set to provisional 70820 PROVISIONAL