Ssc5d (scavenger receptor cysteine rich family member with 5 domains) - Rat Genome Database

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Gene: Ssc5d (scavenger receptor cysteine rich family member with 5 domains) Rattus norvegicus
Analyze
Symbol: Ssc5d
Name: scavenger receptor cysteine rich family member with 5 domains
RGD ID: 1565772
Description: Predicted to enable fibronectin binding activity; laminin binding activity; and scavenger receptor activity. Predicted to be involved in negative regulation of interleukin-8 production and response to bacterium. Predicted to act upstream of or within regulation of interleukin-8 production. Predicted to be located in membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human SSC5D (scavenger receptor cysteine rich family member with 5 domains); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hypothetical protein LOC308341; LOC308341; RGD1565772; scavenger receptor cysteine rich domain containing (5 domains); scavenger receptor cysteine rich family, 5 domains; similar to hypothetical protein A430110N23; soluble scavenger receptor cysteine-rich domain-containing protein SSC5D
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,920,781 - 77,939,284 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl177,920,783 - 77,938,574 (-)EnsemblGRCr8
mRatBN7.2168,891,942 - 68,910,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,891,949 - 68,909,743 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx174,237,019 - 74,254,806 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,801,321 - 82,819,112 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,950,146 - 75,967,907 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,443,750 - 72,462,293 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,443,758 - 72,461,547 (-)Ensemblrn6Rnor6.0
Rnor_5.0176,073,784 - 76,092,321 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,630,584 - 67,648,373 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,209,472 - 68,227,251 (+)NCBICelera
Cytogenetic Map1q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
extracellular matrix  (IBA,IEA,ISO)
extracellular space  (IBA,IEA,ISO)
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:21217009   PMID:24006456  


Genomics

Comparative Map Data
Ssc5d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8177,920,781 - 77,939,284 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl177,920,783 - 77,938,574 (-)EnsemblGRCr8
mRatBN7.2168,891,942 - 68,910,462 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl168,891,949 - 68,909,743 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx174,237,019 - 74,254,806 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0182,801,321 - 82,819,112 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,950,146 - 75,967,907 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,443,750 - 72,462,293 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,443,758 - 72,461,547 (-)Ensemblrn6Rnor6.0
Rnor_5.0176,073,784 - 76,092,321 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4167,630,584 - 67,648,373 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera168,209,472 - 68,227,251 (+)NCBICelera
Cytogenetic Map1q12NCBI
SSC5D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381955,488,436 - 55,519,099 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1955,488,404 - 55,519,099 (+)Ensemblhg38GRCh38
GRCh371955,999,803 - 56,030,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361960,691,682 - 60,722,278 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1953,039,800 - 53,070,315 (+)NCBICelera
Cytogenetic Map19q13.42NCBI
HuRef1952,312,957 - 52,343,555 (+)NCBIHuRef
CHM1_11955,993,884 - 56,024,489 (+)NCBICHM1_1
T2T-CHM13v2.01958,584,709 - 58,615,450 (+)NCBIT2T-CHM13v2.0
Ssc5d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3974,928,820 - 4,947,827 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl74,928,784 - 4,947,825 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3874,925,129 - 4,944,828 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl74,925,785 - 4,944,826 (+)Ensemblmm10GRCm38
MGSCv3774,877,446 - 4,896,399 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3674,528,931 - 4,547,884 (+)NCBIMGSCv36mm8
Celera74,667,408 - 4,686,397 (+)NCBICelera
Cytogenetic Map7A1NCBI
cM Map72.85NCBI
Ssc5d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955567789,182 - 809,636 (-)Ensembl
ChiLan1.0NW_004955567789,396 - 809,597 (-)NCBIChiLan1.0ChiLan1.0
SSC5D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22061,628,678 - 61,659,126 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11963,357,141 - 63,389,913 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01952,532,857 - 52,563,244 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11961,220,816 - 61,251,429 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1961,222,371 - 61,251,329 (+)EnsemblpanPan2panpan1.1
SSC5D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11102,195,426 - 102,222,352 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1102,196,890 - 102,221,444 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1102,251,753 - 102,278,411 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01102,848,223 - 102,874,880 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1102,848,764 - 102,874,616 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11102,485,466 - 102,512,097 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01102,198,553 - 102,224,160 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01102,960,777 - 102,987,426 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ssc5d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244093491,824,810 - 1,845,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936886715,253 - 734,484 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936886715,159 - 734,428 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SSC5D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl659,641,448 - 59,665,331 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1659,641,220 - 59,672,249 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2654,603,844 - 54,608,819 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SSC5D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1648,083,375 - 48,105,356 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl648,083,543 - 48,105,218 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045731,804 - 754,456 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ssc5d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248321,849,869 - 1,867,506 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248321,849,688 - 1,868,207 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ssc5d
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12177,510,492 - 177,527,669 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ssc5d
224 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:25
Count of miRNA genes:23
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000022480
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
1578649Bmd8Bone mineral density QTL 84.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)151940904101229020Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
61342Bp27Blood pressure QTL 273.40.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16540563796805205Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889962Bss94Bone structure and strength QTL 943.8tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)15190920691302615Rat
6903308Scl36Serum cholesterol QTL 3620.0125blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)158769992103769992Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat

Markers in Region
D1Got360  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,895,029 - 68,895,264 (+)MAPPERmRatBN7.2
Rnor_6.0172,446,839 - 72,447,071NCBIRnor6.0
Rnor_5.0176,089,006 - 76,089,238UniSTSRnor5.0
RGSC_v3.4167,633,665 - 67,633,897UniSTSRGSC3.4
Celera168,223,938 - 68,224,170UniSTS
Cytogenetic Map1q12UniSTS
BE097029  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,910,995 - 68,911,148 (+)MAPPERmRatBN7.2
Rnor_6.0172,462,800 - 72,462,952NCBIRnor6.0
Rnor_5.0176,073,125 - 76,073,277UniSTSRnor5.0
RGSC_v3.4167,649,626 - 67,649,778UniSTSRGSC3.4
Celera168,208,067 - 68,208,219UniSTS
Cytogenetic Map1q12UniSTS
RH135111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2168,892,087 - 68,892,298 (+)MAPPERmRatBN7.2
Rnor_6.0172,443,897 - 72,444,107NCBIRnor6.0
Rnor_5.0176,091,970 - 76,092,180UniSTSRnor5.0
RGSC_v3.4167,630,723 - 67,630,933UniSTSRGSC3.4
Celera168,226,902 - 68,227,112UniSTS
Cytogenetic Map1q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 67 163 90 89 58 80 58 6 342 180 11 142 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022480   ⟹   ENSRNOP00000022480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl177,920,783 - 77,938,574 (-)Ensembl
mRatBN7.2 Ensembl168,891,949 - 68,909,743 (-)Ensembl
Rnor_6.0 Ensembl172,443,758 - 72,461,547 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000132939   ⟹   ENSRNOP00000100469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl177,920,783 - 77,938,574 (-)Ensembl
RefSeq Acc Id: NM_001134545   ⟹   NP_001128017
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8177,920,783 - 77,938,574 (-)NCBI
mRatBN7.2168,891,949 - 68,909,743 (-)NCBI
Rnor_6.0172,443,758 - 72,461,547 (-)NCBI
Rnor_5.0176,073,784 - 76,092,321 (+)NCBI
RGSC_v3.4167,630,584 - 67,648,373 (-)RGD
Celera168,209,472 - 68,227,251 (+)RGD
Sequence:
RefSeq Acc Id: XM_006228257   ⟹   XP_006228319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8177,920,781 - 77,939,284 (-)NCBI
mRatBN7.2168,891,942 - 68,910,462 (-)NCBI
Rnor_6.0172,443,750 - 72,462,293 (-)NCBI
Rnor_5.0176,073,784 - 76,092,321 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063288690   ⟹   XP_063144760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8177,920,781 - 77,939,284 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001128017 (Get FASTA)   NCBI Sequence Viewer  
  XP_006228319 (Get FASTA)   NCBI Sequence Viewer  
  XP_063144760 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL75875 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022480
  ENSRNOP00000022480.5
  ENSRNOP00000100469
  ENSRNOP00000100469.1
RefSeq Acc Id: NP_001128017   ⟸   NM_001134545
- Peptide Label: precursor
- UniProtKB: D3ZPK4 (UniProtKB/TrEMBL),   A6KNQ6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006228319   ⟸   XM_006228257
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000022480   ⟸   ENSRNOT00000022480
RefSeq Acc Id: XP_063144760   ⟸   XM_063288690
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000100469   ⟸   ENSRNOT00000132939
Protein Domains
SRCR

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPK4-F1-model_v2 AlphaFold D3ZPK4 1-1436 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689691
Promoter ID:EPDNEW_R216
Type:initiation region
Name:Ssc5d_1
Description:scavenger receptor cysteine rich family member with 5 domains
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0172,461,560 - 72,461,620EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565772 AgrOrtholog
BioCyc Gene G2FUF-60871 BioCyc
Ensembl Genes ENSRNOG00000016687 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022480 ENTREZGENE
  ENSRNOT00000022480.7 UniProtKB/TrEMBL
  ENSRNOT00000132939 ENTREZGENE
  ENSRNOT00000132939.1 UniProtKB/TrEMBL
Gene3D-CATH 3.10.250.10 UniProtKB/TrEMBL
InterPro SRCR-like_dom_sf UniProtKB/TrEMBL
  Srcr_rcpt UniProtKB/TrEMBL
KEGG Report rno:308341 UniProtKB/TrEMBL
NCBI Gene 308341 ENTREZGENE
PANTHER SCAVENGER RECEPTOR DOMAIN-CONTAINING UniProtKB/TrEMBL
  SOLUBLE SCAVENGER RECEPTOR CYSTEINE-RICH DOMAIN-CONTAINING PROTEIN SSC5D UniProtKB/TrEMBL
Pfam SRCR UniProtKB/TrEMBL
PhenoGen Ssc5d PhenoGen
PRINTS SPERACTRCPTR UniProtKB/TrEMBL
PROSITE SRCR_1 UniProtKB/TrEMBL
  SRCR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016687 RatGTEx
SMART SM00202 UniProtKB/TrEMBL
Superfamily-SCOP Srcr_receptor UniProtKB/TrEMBL
UniProt A0ABK0L6M2_RAT UniProtKB/TrEMBL
  A6KNQ6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPK4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-05-04 Ssc5d  scavenger receptor cysteine rich family member with 5 domains  Ssc5d  scavenger receptor cysteine rich family, 5 domains  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-07-16 Ssc5d  scavenger receptor cysteine rich family, 5 domains  Ssc5d  scavenger receptor cysteine rich domain containing (5 domains)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-05-25 Ssc5d  scavenger receptor cysteine rich domain containing (5 domains)  RGD1565772  similar to hypothetical protein A430110N23  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565772  similar to hypothetical protein A430110N23   RGD1565772_predicted  similar to hypothetical protein A430110N23 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565772_predicted  similar to hypothetical protein A430110N23 (predicted)  LOC308341  similar to hypothetical protein A430110N23  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC308341  similar to hypothetical protein A430110N23      Symbol and Name status set to provisional 70820 PROVISIONAL