Ulk4 (unc-51 like kinase 4) - Rat Genome Database

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Gene: Ulk4 (unc-51 like kinase 4) Rattus norvegicus
Analyze
Symbol: Ulk4
Name: unc-51 like kinase 4
RGD ID: 1565726
Description: Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within several processes, including cilium organization; nervous system development; and regulation of intracellular signal transduction. Predicted to be located in extracellular region. Orthologous to human ULK4 (unc-51 like kinase 4); INTERACTS WITH 6-propyl-2-thiouracil; amphetamine; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC363167; RGD1565726; serine/threonine-protein kinase ULK4; similar to hypothetical protein A730098P15; unc-51-like kinase 4; unc-51-like kinase 4 (C. elegans)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Ulk4em3Mcwi  
Genetic Models: SS-Ulk4em3Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,548,431 - 129,843,555 (-)NCBIGRCr8
mRatBN7.28120,670,879 - 120,966,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08129,631,003 - 129,919,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,829,597 - 129,125,286 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,992,455 - 126,284,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8119,808,966 - 120,095,020 (-)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:21746835   PMID:24284070   PMID:27300315   PMID:27445138   PMID:29034508   PMID:29391390  


Genomics

Comparative Map Data
Ulk4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88129,548,431 - 129,843,555 (-)NCBIGRCr8
mRatBN7.28120,670,879 - 120,966,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.08129,631,003 - 129,919,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08128,829,597 - 129,125,286 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48125,992,455 - 126,284,263 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8119,808,966 - 120,095,020 (-)NCBICelera
Cytogenetic Map8q32NCBI
ULK4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38341,246,599 - 41,962,103 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl341,246,599 - 41,962,130 (-)EnsemblGRCh38hg38GRCh38
GRCh37341,288,090 - 42,003,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36341,263,094 - 41,978,664 (-)NCBINCBI36Build 36hg18NCBI36
Build 34341,978,515 - 41,978,574NCBI
Celera341,226,416 - 41,942,816 (-)NCBICelera
Cytogenetic Map3p22.1NCBI
HuRef341,333,321 - 42,047,163 (-)NCBIHuRef
CHM1_1341,238,652 - 41,954,787 (-)NCBICHM1_1
T2T-CHM13v2.0341,255,217 - 41,980,057 (-)NCBIT2T-CHM13v2.0
Ulk4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399120,793,520 - 121,115,225 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9120,784,417 - 121,106,263 (-)EnsemblGRCm39 Ensembl
GRCm389120,964,454 - 121,286,159 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9120,955,351 - 121,277,197 (-)EnsemblGRCm38mm10GRCm38
MGSCv379120,873,572 - 121,186,290 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369120,982,789 - 121,186,592 (-)NCBIMGSCv36mm8
Celera9121,435,446 - 121,746,505 (-)NCBICelera
Cytogenetic Map9F4NCBI
cM Map972.19NCBI
Ulk4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542028,633,726 - 29,028,025 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542028,633,011 - 29,031,161 (+)NCBIChiLan1.0ChiLan1.0
ULK4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2241,201,181 - 41,922,285 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1341,205,941 - 41,927,169 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0341,152,261 - 41,864,865 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1341,420,162 - 42,129,218 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl341,568,907 - 42,121,959 (-)Ensemblpanpan1.1panPan2
ULK4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12310,578,391 - 11,176,543 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2310,578,429 - 11,176,545 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2310,614,934 - 11,212,666 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02310,865,767 - 11,464,428 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2310,865,770 - 11,464,449 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12310,675,524 - 11,266,508 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,817,061 - 11,408,866 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,809,035 - 11,412,354 (-)NCBIUU_Cfam_GSD_1.0
Ulk4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118196,896,010 - 197,397,921 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647330,038,164 - 30,536,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647330,034,159 - 30,536,450 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ULK4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1325,209,368 - 25,751,500 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11325,207,890 - 25,751,465 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21328,071,886 - 28,220,715 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ULK4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1222,731,174 - 3,398,885 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl222,731,308 - 3,398,912 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041163,794,109 - 164,464,458 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ulk4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473077,495,747 - 77,875,622 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473077,495,705 - 77,876,547 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ulk4
1223 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:471
Count of miRNA genes:214
Interacting mature miRNAs:248
Transcripts:ENSRNOT00000026073, ENSRNOT00000055871, ENSRNOT00000064688, ENSRNOT00000065691, ENSRNOT00000066757, ENSRNOT00000074423
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat


Genetic Models
This gene Ulk4 is modified in the following models/strains:
SS-Ulk4em3Mcwi    


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 10 2
Low 3 24 33 17 19 17 1 1 66 35 31 9 1
Below cutoff 19 20 20 20 7 10 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039082737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000074423   ⟹   ENSRNOP00000064927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,670,866 - 120,966,924 (-)Ensembl
Rnor_6.0 Ensembl8129,632,149 - 129,919,120 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000105018   ⟹   ENSRNOP00000093541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8120,779,402 - 120,966,924 (-)Ensembl
RefSeq Acc Id: NM_001427712   ⟹   NP_001414641
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,501 (-)NCBI
RefSeq Acc Id: XM_039082731   ⟹   XP_038938659
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,554 (-)NCBI
mRatBN7.28120,670,879 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082732   ⟹   XP_038938660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,525 (-)NCBI
mRatBN7.28120,670,879 - 120,965,969 (-)NCBI
RefSeq Acc Id: XM_039082734   ⟹   XP_038938662
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,554 (-)NCBI
mRatBN7.28120,670,879 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082736   ⟹   XP_038938664
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,756,764 - 129,843,555 (-)NCBI
mRatBN7.28120,878,896 - 120,966,026 (-)NCBI
RefSeq Acc Id: XM_039082737   ⟹   XP_038938665
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,796,513 (-)NCBI
mRatBN7.28120,670,879 - 120,918,988 (-)NCBI
RefSeq Acc Id: XM_063265849   ⟹   XP_063121919
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,528 (-)NCBI
RefSeq Acc Id: XM_063265850   ⟹   XP_063121920
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,843,536 (-)NCBI
RefSeq Acc Id: XM_063265851   ⟹   XP_063121921
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88129,548,431 - 129,835,719 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000064927   ⟸   ENSRNOT00000074423
RefSeq Acc Id: XP_038938662   ⟸   XM_039082734
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938659   ⟸   XM_039082731
- Peptide Label: isoform X1
- UniProtKB: M0R685 (UniProtKB/TrEMBL),   A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938660   ⟸   XM_039082732
- Peptide Label: isoform X1
- UniProtKB: M0R685 (UniProtKB/TrEMBL),   A0A8I6AHS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038938665   ⟸   XM_039082737
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938664   ⟸   XM_039082736
- Peptide Label: isoform X6
RefSeq Acc Id: ENSRNOP00000093541   ⟸   ENSRNOT00000105018
RefSeq Acc Id: XP_063121920   ⟸   XM_063265850
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121919   ⟸   XM_063265849
- Peptide Label: isoform X2
RefSeq Acc Id: NP_001414641   ⟸   NM_001427712
RefSeq Acc Id: XP_063121921   ⟸   XM_063265851
- Peptide Label: isoform X5
Protein Domains
Protein kinase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R685-F1-model_v2 AlphaFold M0R685 1-1101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565726 AgrOrtholog
BioCyc Gene G2FUF-28710 BioCyc
Ensembl Genes ENSRNOG00000019271 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074423.4 UniProtKB/TrEMBL
  ENSRNOT00000105018.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
  Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Kinase-like_dom UniProtKB/TrEMBL
  Prot_kinase_cat_dom UniProtKB/TrEMBL
  ULK4 UniProtKB/TrEMBL
NCBI Gene 363167 ENTREZGENE
PANTHER PTHR46240 UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN KINASE ULK4 UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen Ulk4 PhenoGen
PROSITE PROTEIN_KINASE_DOM UniProtKB/TrEMBL
RatGTEx ENSRNOG00000019271 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
  Kinase_like UniProtKB/TrEMBL
UniProt A0A8I6AHS6 ENTREZGENE, UniProtKB/TrEMBL
  M0R685 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-05 Ulk4  unc-51-like kinase 4 (C. elegans)  RGD1565726  similar to hypothetical protein A730098P15  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1565726  similar to hypothetical protein A730098P15   RGD1565726_predicted  similar to hypothetical protein A730098P15 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1565726_predicted  similar to hypothetical protein A730098P15 (predicted)  LOC363167  similar to hypothetical protein A730098P15  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC363167  similar to hypothetical protein A730098P15      Symbol and Name status set to provisional 70820 PROVISIONAL