Depp1 (DEPP autophagy regulator 1)

Gene: Depp1 (DEPP autophagy regulator 1) Rattus norvegicus

Analyze

Symbol:

Depp1

Name:

DEPP autophagy regulator 1

RGD ID:

1565700

Description:

Predicted to be involved in regulation of autophagy. Predicted to be located in peroxisome. Predicted to be active in mitochondrion. Orthologous to human DEPP1 (DEPP autophagy regulator 1); INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 17beta-estradiol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

decidual protein induced by progesterone; Depp; DEPP1, autophagy regulator; LOC500300; similar to hypothetical protein MGC6835

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	DEPP1 (DEPP autophagy regulator 1)	HGNC	EggNOG, Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther
Mus musculus (house mouse):	Depp1 (DEPP1 autophagy regulator)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Depp1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	DEPP1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	DEPP1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Depp1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	DEPP1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	DEPP1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Depp1 (DEPP autophagy regulator 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	DEPP1 (DEPP autophagy regulator 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Depp1 (DEPP1 autophagy regulator)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkeyp-72g9.4	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Danio rerio (zebrafish):	si:ch73-6k14.2	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	151,583,105 - 151,585,455 (+)	NCBI		GRCr8
mRatBN7.2	4	149,910,794 - 149,913,013 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	149,910,779 - 149,914,542 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	156,152,814 - 156,154,892 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	151,936,856 - 151,938,934 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	150,559,748 - 150,561,826 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	148,780,330 - 148,784,566 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	148,782,479 - 148,784,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	214,721,136 - 214,723,301 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	153,000,782 - 153,002,562 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	138,786,484 - 138,788,568 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Neoplasms (ISO)

COVID-19 (ISO)

endometriosis (ISO)

lipid storage disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine (ISO)

1-naphthyl isothiocyanate (EXP,ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3-chloropropane-1,2-diol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP,ISO)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

amitriptyline (ISO)

Archazolid B (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-naphthoflavone (ISO)

bexarotene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

bromobenzene (EXP)

butanal (ISO)

calcitriol (ISO)

capsaicin (ISO)

chlordecone (ISO)

chlorpromazine (ISO)

chlorpyrifos (ISO)

choline (ISO)

cisplatin (ISO)

clomipramine (ISO)

clozapine (ISO)

copper atom (EXP)

copper(0) (EXP)

cyanocob(III)alamin (ISO)

cyclosporin A (ISO)

cypermethrin (ISO)

D-glucose (ISO)

dexamethasone (ISO)

dextran sulfate (ISO)

diazinon (ISO)

dicrotophos (ISO)

diiodine (ISO)

dimethyl sulfoxide (ISO)

dinophysistoxin 1 (ISO)

diquat (ISO)

dorsomorphin (ISO)

doxepin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

erythromycin A (ISO)

flecainide (ISO)

fluoxetine (ISO)

folic acid (ISO)

formaldehyde (ISO)

fructose (ISO)

fulvestrant (ISO)

glucose (ISO)

glycidol (ISO)

glycine betaine (ISO)

haloperidol (ISO)

herbicide (ISO)

hydrogen cyanide (ISO)

imipramine (ISO)

indometacin (ISO)

inulin (ISO)

isoniazide (ISO)

ketoconazole (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

manganese(II) chloride (EXP)

medroxyprogesterone acetate (ISO)

methamphetamine (ISO)

mifepristone (ISO)

nickel sulfate (ISO)

nitrofen (EXP)

ofloxacin (ISO)

p-anisidine (ISO)

paracetamol (ISO)

pentamidine (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

perhexiline (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pioglitazone (ISO)

potassium cyanide (ISO)

progesterone (ISO)

quercetin (ISO)

quinidine (ISO)

quinolin-8-ol (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sertraline (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sotalol (ISO)

sotorasib (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (ISO)

tert-butyl hydroperoxide (ISO)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

tetracycline (ISO)

thioacetamide (EXP)

thioridazine (ISO)

titanium dioxide (EXP)

trametinib (ISO)

triphenyl phosphate (EXP)

Triptolide (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (ISO)

zimeldine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of autophagy (IBA,IEA,ISO)

Cellular Component

cytoplasm (ISO)

intracellular membrane-bounded organelle (ISO)

mitochondrion (IBA,IEA,ISO)

peroxisome (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:15977181	PMID:18614015	PMID:25261981	PMID:28545464

Genomics

Comparative Map Data

Depp1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	151,583,105 - 151,585,455 (+)	NCBI		GRCr8
mRatBN7.2	4	149,910,794 - 149,913,013 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	149,910,779 - 149,914,542 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	156,152,814 - 156,154,892 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	151,936,856 - 151,938,934 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	150,559,748 - 150,561,826 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	148,780,330 - 148,784,566 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	148,782,479 - 148,784,562 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	214,721,136 - 214,723,301 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	153,000,782 - 153,002,562 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	138,786,484 - 138,788,568 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

DEPP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	44,976,128 - 44,978,809 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	44,970,981 - 44,978,809 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	45,471,576 - 45,474,257 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	44,791,715 - 44,794,336 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	44,791,716 - 44,794,263	NCBI
Celera	10	41,474,883 - 41,477,504 (-)	NCBI		Celera
Cytogenetic Map	10	q11.21	NCBI
HuRef	10	41,996,250 - 41,998,871 (-)	NCBI		HuRef
CHM1_1	10	45,510,686 - 45,513,307 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	45,857,092 - 45,859,773 (-)	NCBI		T2T-CHM13v2.0

Depp1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	116,627,645 - 116,629,808 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	116,627,570 - 116,629,755 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	116,650,684 - 116,652,847 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	116,650,609 - 116,652,794 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	116,600,702 - 116,602,865 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	116,616,318 - 116,618,413 (+)	NCBI		MGSCv36	mm8
Celera	6	118,491,933 - 118,494,097 (+)	NCBI		Celera
Cytogenetic Map	6	E3	NCBI
cM Map	6	53.83	NCBI

Depp1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955546	2,291,829 - 2,293,375 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955546	2,291,829 - 2,293,375 (-)	NCBI	ChiLan1.0	ChiLan1.0

DEPP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	57,712,084 - 57,713,637 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	57,717,413 - 57,718,929 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	41,970,914 - 41,973,518 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	45,150,510 - 45,153,157 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	45,151,636 - 45,152,280 (-)	Ensembl	panpan1.1		panPan2

DEPP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	2,463,770 - 2,465,240 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	2,464,584 - 2,465,210 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	2,699,175 - 2,700,647 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	2,642,640 - 2,644,112 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	2,643,452 - 2,644,078 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	2,441,206 - 2,442,678 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	2,478,478 - 2,479,950 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	2,609,647 - 2,611,119 (+)	NCBI		UU_Cfam_GSD_1.0

Depp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	82,041,955 - 82,043,912 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936617	4,740,103 - 4,740,741 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936617	4,740,073 - 4,743,610 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

DEPP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	91,114,441 - 91,122,191 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	91,118,332 - 91,120,242 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	99,353,238 - 99,354,838 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

DEPP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	40,602,193 - 40,603,791 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	40,602,223 - 40,602,861 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	45,800,538 - 45,802,078 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Depp1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004628729	538 - 1,142 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Depp1
13 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	80
Count of miRNA genes:	65
Interacting mature miRNAs:	75
Transcripts:	ENSRNOT00000018133
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	119428175	157578333	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
61446	Coreg2	Compensatory renal growth QTL 2	3.5		kidney mass (VT:0002707)	compensatory renal growth score (CMO:0001894)	4	148423102	157580971	Rat

Markers in Region

RH141008

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	149,912,572 - 149,912,792 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	148,784,126 - 148,784,345	NCBI	Rnor6.0
Rnor_5.0	4	214,722,861 - 214,723,080	UniSTS	Rnor5.0
RGSC_v3.4	4	153,002,125 - 153,002,344	UniSTS	RGSC3.4
Celera	4	138,788,131 - 138,788,350	UniSTS
RH 3.4 Map	4	966.6	UniSTS
Cytogenetic Map	4	q42	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		43	27	17	2	17	5	8		24	13	11	5
Low	3		30	24	17	24	3	3	74	11	27		3
Below cutoff											1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024334	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237196	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237197	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY931022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC087112	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000018133 ⟹ ENSRNOP00000018133

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	149,910,779 - 149,914,542 (+)	Ensembl
Rnor_6.0 Ensembl	4	148,782,479 - 148,784,562 (+)	Ensembl

RefSeq Acc Id:

NM_001024334 ⟹ NP_001019505

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,583,371 - 151,585,455 (+)	NCBI
mRatBN7.2	4	149,910,926 - 149,913,010 (+)	NCBI
Rnor_6.0	4	148,782,479 - 148,784,563 (+)	NCBI
Rnor_5.0	4	214,721,136 - 214,723,301 (+)	NCBI
RGSC_v3.4	4	153,000,782 - 153,002,562 (+)	RGD
Celera	4	138,786,484 - 138,788,568 (+)	RGD

Sequence:

show sequence

GGAGAAACCATAGCACATCGTCTTGATTGTCCTCTCCCCAGTGACCAAGAGCTAGAGACCCGGC
TGTGATTGTCCTTCTCTGGGTGCTGCCTTTGGATCAGACAATCTTTACTCTTCTAGACTTCCTG
CCACCCTGACTGCTGACTTACAGCAATGAGGTCCCGCCTTCTGCTGCCTGTGCCCCATTTGCCA
ACGATTCGGGAAACTTCAGAGGAGCTATCGCATGGGGCACCTGGGCAGGAGCCTCCAGCCTCTC
CCAGCCTGGATGACTATGTCAGGTGTATTTGTCAGCTGGCACAGCCTACCTCAGTGGTGGACAA
GGCCACAGCCTGGAGCCCTCCCAACAGATCCTGCCGGCCAGCCTGGCCTAGAGAGAAGAGGCAC
CAGTCCGAGTCTCTAGAAGATAGTTCTCCTTGCTTCAGCAGCCTACAGCCCACACTGCCCGCTC
CCGGCACTGACAACCCTCTGGACTGGCTCTTTGGAAAGTCACAGGAACAGCAGACAGATAGAAG
AGATCTACCCAACAGGACCGGTTCTTCAGGTCACTGGGGTGTGCACAGACAGATGGGCAAGGAC
TCGGGGAGGCCTTCTGAGGCCAGGGTACCTGAGTACTCCCTGGGAAGAAAGCCAGGGCACAGGC
ACCAGACCTCCAACCTGAAAAGCTGGACTTCTAGAAAGCCCTGCCAGGCCTTAGCATCCGTCTC
CAGCTCTCGCCCCAGCAGCATCCTAGGCACTCTCTATTTGCATCTCCCAGTGATTCATGAACTC
TAACCCCTCCCCAGAAAAACTCATAAAGAACATGGAGGGTCCTGTGACCTCCCCAGCTTCTCTC
TCCTGTGGTGGACACTTCCTGGTCTGCAGGGATTGGGCAATTAATTCCTGGGGAGACCCATTCT
TTAAACGGTGATGACAGTCTAGCTCCCACAATGCAGCTTGACTGGTACTGTCTGTTTGTGACTG
GCTGGCCCATGACCTTGAAGTGACTTAGTTTCTCTTCCTTAGTTTTATCACGGTTAAAGTGAGT
GTAGGCGGAATGACTACCTCTCAGATTGCTCTAATAAGGAGATGCGGGCTGTACTCTGAGTGGC
AAGAGTACACAGTTCAGGGTGGCTGCCATAGTCTCACAAGAAACCAAGGGCAAAGGGGCAAGGG
AAGGGTCTCAGCCCCATAAGGCAGACTTTCAACTGTCCTAATGTTGTGACCTTTGAATACAGTT
CCTCATGCTGTGTGATCCCCAACCATAAAATTATTTTTGTTGCTACTTCAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237196 ⟹ XP_006237258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,583,109 - 151,585,455 (+)	NCBI
mRatBN7.2	4	149,910,796 - 149,913,013 (+)	NCBI
Rnor_6.0	4	148,780,331 - 148,784,566 (+)	NCBI
Rnor_5.0	4	214,721,136 - 214,723,301 (+)	NCBI

Sequence:

show sequence

CCTCTTTTCTCTTATCCTCTCTTCTCTTTAGGTATTTATTCAGTGATAGTCTGCATCCGGCTAC
CACGGTAACCATAACTAACCTCTTTCTGTCTCTATTTGCATCTTGGATGGTGACGCCACCATGG
ACGGGCCGGCTGACTACGATGCACGATGACTAACAGCATGCTGAAGATGTTTGTGAGCACAACG
GATGCTGGGGATGCGTGGGTCCTAATTAAGAGTTCAGTCGGGCCGCCTAACCCACGGAGCAGGA
GGCCTAAGCAAAGTCTGTGATTAGTTCCTTCCTCTGCTACCGAGTGATTCTCAGGCACAGTGCT
GAGGGGCTAAGTGAGTCTGAAGCCTCCCATGCCTAATGACTACTTAAACGCACAGTGAGGTGGA
TTTGCAGTGGGCACTTCCCAGTGGATCTCTAAGATTCATTCAGCTTGAAGAACTGTGATCCCCA
CTTCTCTTTCCTCCCCACCACTCTTGATAGGCACCATTCTTCTTTCTGCTTCTATGAATTTGAT
TTGTTTTGAATTCCACACCGCACTTAAGTGAAATTATACAGCACCACCCCCCCACCCCGCAGTC
TACTCTCTCTTCGTTGTCATGGAACGTCTCCATGAGAACAGGGATACCAGGAGAACTTCTTCAC
GTGAATATGGCCTCAGTCCCACTCAAGGTGTGGTTCCCATGGTCAGCTAACAGTCATATCTAGT
TTCAAACACCTCACTGCCCACAGAGAGAATAGTCTAAGGTTATCAAAACCACACACAGCTTCTT
GATATGGCCCTGTAGTGTTTGCCTTAACAGTCAGGCCAAAAGCTGGAGTCTAGTGGGATCATTC
AGGTGTAAGTGGGGAATTGCCGCCTGACTTAAGCATTGTTCAGTATCTCCCGTGCCTTTACCCA
AGGCACTAACACCACCCTTGGAATGCACAGATGCGGGACCAGCAGCGCTCTGTGCCCTCTGTCC
ATCTCTCATGTATCAGATCTGAGTATACTGTTCCCTCTGAAACTCCTCTTCCTCCTGCTTCTGA
GGGTAGATGATCAGAGGCTCTGAGGACTGAGAAACTCACTGCTGGTTCCTTCCCAGGGTTGTCC
ACCTTGCCTTCAGCTGCCGCTTTGTTGGTATCACCCCTAGAGTTCCCTGGTTCCTCACAGCCCG
CCATTAGCTCGAGCATGGCAACTGGCAAAAGCCACACAGCAGCTCCTTACTCAGACCTGCAGTG
CCCTGCCATTGCTTTGACATCTTCTGGGCCCCTGACCTGGACCATGCACATAGGCTCCCATTGT
TCCCCGAGTGTGCCCAGCACATTGTCGTCATAGGGCCTTTGCATGTATGTACTGCTCCAGCGTT
TTTAGATCTCTGCACCAATGTCACCTGTAGAGAAGATATTTCTGACAGTCTCACCTGTAGTAGC
AGCTATGACGCTGCTCTACAGCCTTTCGGCACCCTTCCTTGCAGCCATCATGAGTACCGAGTCA
CTGCCCCTGCCCACTGCTGACTGGATCATCCTCCTCACTGGGAAACAGGCTTCCTAGGTGGCGA
TTTGTCTGCAGTATTTACAGTCGCTGCACATGTCTGGCCAACAATGGGTAAGCAAATTTCCTCT
TGAAAGCATCGCATCTGAGGTGTTATGAGAGAAGCCAGACCAACGGTTGGGCTGCCCTGGTGCC
TGTGTAAGGGAATGTCCTTCACCCTGCAAGGCTCATGTGTTATCACAGTCATAAGTGCAGGCCT
GGGACTCAGCAAAAATTAGTACAAGGCTGGTGTGTCATGGGATCACAGGGGCTAGTGTCATCCA
TAGTAGAAAATACTGTGTTATACCAGACATTGGCGGAAGCCTGTGAGGGTCCTATGCTGTTCCC
AGGCTCTCCCAGCAACCCCTAAGCTGGCTTTGGTTTCTATCCCTAGTGAAGCTGTCTAAGTCAA
GGCGTGGTGGCCGCCCCACACCTCACCCTACGGTGTAAATATTTCCCAACCTCCTGCAGGCACA
TACACACATTCCAGGCTGGCATCTGGGCCAAGCCCCACCCTCTGTGCTTTCCTCTGAGAACCTT
CTGAAGCGCTGCTATTTTGAGCTTTTCCTGACAGTGATTGATGACTGGAGGAACCGTTTAAAAG
CAGCAGCGATTGTTGGATTTGCCAGACAGCGCAGGGGGAGAAACCATAGCACATCGTCTTGATT
GTCCTCTCCCCAGTGACCAAGAGCTAGAGACCCGGCTGTGATTGTCCTTCTCTGGGTGCTGCCT
TTGGATCAGACAATCTTTACTCTTCTAGACTTCCTGCCACCCTGACTGCTGACTTACAGCAGCA
ATGAGGTCCCGCCTTCTGCTGCCTGTGCCCCATTTGCCAACGATTCGGGAAACTTCAGAGGAGC
TATCGCATGGGGCACCTGGGCAGGAGCCTCCAGCCTCTCCCAGCCTGGATGACTATGTCAGGTG
TATTTGTCAGCTGGCACAGCCTACCTCAGTGGTGGACAAGGCCACAGCCTGGAGCCCTCCCAAC
AGATCCTGCCGGCCAGCCTGGCCTAGAGAGAAGAGGCACCAGTCCGAGTCTCTAGAAGATAGTT
CTCCTTGCTTCAGCAGCCTACAGCCCACACTGCCCGCTCCCGGCACTGACAACCCTCTGGACTG
GCTCTTTGGAAAGTCACAGGAACAGCAGACAGATAGAAGAGATCTACCCAACAGGACCGGTTCT
TCAGGTCACTGGGGTGTGCACAGACAGATGGGCAAGGACTCGGGGAGGCCTTCTGAGGCCAGGG
TACCTGAGTACTCCCTGGGAAGAAAGCCAGGGCACAGGCACCAGACCTCCAACCTGAAAAGCTG
GACTTCTAGAAAGCCCTGCCAGGCCTTAGCATCCGTCTCCAGCTCTCGCCCCAGCAGCATCCTA
GGCACTCTCTATTTGCATCTCCCAGTGATTCATGAACTCTAACCCCTCCCCAGAAAAACTCATA
AAGAACATGGAGGGTCCTGTGACCTCCCCAGCTTCTCTCTCCTGTGGTGGACACTTCCTGGTCT
GCAGGGATTGGGCAATTAATTCCTGGGGAGACCCATTCTTTAAACGGTGATGACAGTCTAGCTC
CCACAATGCAGCTTGACTGGTACTGTCTGTTTGTGACTGGCTGGCCCATGACCTTGAAGTGACT
TAGTTTCTCTTCCTTAGTTTTATCACGGTTAAAGTGAGTGTAGGCGGAATGACTACCTCTCAGA
TTGCTCTAATAAGGAGATGCGGGCTGTACTCTGAGTGGCAAGAGTACACAGTTCAGGGTGGCTG
CCATAGTCTCACAAGAAACCAAGGGCAAAGGGGCAAGGGAAGGGTCTCAGCCCCATAAGGCAGA
CTTTCAACTGTCCTAATGTTGTGACCTTTGAATACAGTTCCTCATGCTGTGTGATCCCCAACCA
TAAAATTATTTTTGTTGCTACTTCATAA

hide sequence

RefSeq Acc Id:

XM_006237197 ⟹ XP_006237259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	151,583,105 - 151,585,455 (+)	NCBI
mRatBN7.2	4	149,910,794 - 149,913,013 (+)	NCBI
Rnor_6.0	4	148,780,330 - 148,784,566 (+)	NCBI
Rnor_5.0	4	214,721,136 - 214,723,301 (+)	NCBI

Sequence:

show sequence

ACCTCTTTTCTCTTATCCTCTCTTCTCTTTAGGTATTTATTCAGTGATAGTCTGCATCCGGCTA
CCACGGTAACCATAACTAACCTCTTTCTGTCTCTATTTGCATCTTGGATGGTGACGCCACCATG
GACGGGCCGGCTGACTACGATGCACGATGACTAACAGCATGCTGAAGATGTTTGTGAGCACAAC
GGATGCTGGGGATGCGTGGGTCCTAATTAAGAGTTCAGTCGGGCCGCCTAACCCACGGAGCAGG
AGGCCTAAGCAAAGTCTGTGATTAGTTCCTTCCTCTGCTACCGAGTGATTCTCAGGCACAGTGC
TGAGGGGCTAAGTGAGTCTGAAGCCTCCCATGCCTAATGACTACTTAAACGCACAGTGAGGTGG
ATTTGCAGTGGGCACTTCCCAGTGGATCTCTAAGATTCATTCAGCTTGAAGAACTGTGATCCCC
ACTTCTCTTTCCTCCCCACCACTCTTGATAGGCACCATTCTTCTTTCTGCTTCTATGAATTTGA
TTTGTTTTGAATTCCACACCGCACTTAAGTGAAATTATACAGCACCACCCCCCCACCCCGCAGT
CTACTCTCTCTTCGTTGTCATGGAACGTCTCCATGAGAACAGGGATACCAGGAGAACTTCTTCA
CGTGAATATGGCCTCAGTCCCACTCAAGGTGTGGTTCCCATGGTCAGCTAACAGTCATATCTAG
TTTCAAACACCTCACTGCCCACAGAGAGAATAGTCTAAGGTTATCAAAACCACACACAGCTTCT
TGATATGGCCCTGTAGTGTTTGCCTTAACAGTCAGGCCAAAAGCTGGAGTCTAGTGGGATCATT
CAGGTGTAAGTGGGGAATTGCCGCCTGACTTAAGCATTGTTCAGTATCTCCCGTGCCTTTACCC
AAGGCACTAACACCACCCTTGGAATGCACAGATGCGGGACCAGCAGCGCTCTGTGCCCTCTGTC
CATCTCTCATGTATCAGATCTGAGTATACTGTTCCCTCTGAAACTCCTCTTCCTCCTGCTTCTG
AGGGTAGATGATCAGAGGCTCTGAGGACTGAGAAACTCACTGCTGGTTCCTTCCCAGGGTTGTC
CACCTTGCCTTCAGCTGCCGCTTTGTTGGTATCACCCCTAGAGTTCCCTGGTTCCTCACAGCCC
GCCATTAGCTCGAGCATGGCAACTGGCAAAAGCCACACAGCAGCTCCTTACTCAGACCTGCAGT
GCCCTGCCATTGCTTTGACATCTTCTGGGCCCCTGACCTGGACCATGCACATAGGCTCCCATTG
TTCCCCGAGTGTGCCCAGCACATTGTCGTCATAGGGCCTTTGCATGTATGTACTGCTCCAGCGT
TTTTAGATCTCTGCACCAATGTCACCTGTAGAGAAGATATTTCTGACAGTCTCACCTGTAGTAG
CAGCTATGACGCTGCTCTACAGCCTTTCGGCACCCTTCCTTGCAGCCATCATGAGTACCGAGTC
ACTGCCCCTGCCCACTGCTGACTGGATCATCCTCCTCACTGGGAAACAGGCTTCCTAGGTGGCG
ATTTGTCTGCAGTATTTACAGTCGCTGCACATGTCTGGCCAACAATGGGTAAGCAAATTTCCTC
TTGAAAGCATCGCATCTGAGGTGTTATGAGAGAAGCCAGACCAACGGTTGGGCTGCCCTGGTGC
CTGTGTAAGGGAATGTCCTTCACCCTGCAAGGCTCATGTGTTATCACAGTCATAAGTGCAGGCC
TGGGACTCAGCAAAAATTAGTACAAGGCTGGTGTGTCATGGGATCACAGGGGCTAGTGTCATCC
ATAGTAGAAAATACTGTGTTATACCAGACATTGGCGGAAGCCTGTGAGGGTCCTATGCTGTTCC
CAGGCTCTCCCAGCAACCCCTAAGCTGGCTTTGGTTTCTATCCCTAGTGAAGCTGTCTAAGTCA
AGGCGTGGTGGCCGCCCCACACCTCACCCTACGGTGTAAATATTTCCCAACCTCCTGCAGGCAC
ATACACACATTCCAGGCTGGCATCTGGGCCAAGCCCCACCCTCTGTGCTTTCCTCTGAGAACCT
TCTGAAGCGCTGCTATTTTGAGCTTTTCCTGACAGTGATTGATGACTGGAGGAACCGTTTAAAA
GCAGCAGCGATTGTTGGATTTGCCAGACAGCGCAGGGGGAGAAACCATAGCACATCGTCTTGAT
TGTCCTCTCCCCAGTGACCAAGAGCTAGAGACCCGGCTGTGATTGTCCTTCTCTGGGTGCTGCC
TTTGGATCAGACAATCTTTACTCTTCTAGACTTCCTGCCACCCTGACTGCTGACTTACAGGTTG
TTTTTGCTTTATTAGCAGCAATGAGGTCCCGCCTTCTGCTGCCTGTGCCCCATTTGCCAACGAT
TCGGGAAACTTCAGAGGAGCTATCGCATGGGGCACCTGGGCAGGAGCCTCCAGCCTCTCCCAGC
CTGGATGACTATGTCAGGTGTATTTGTCAGCTGGCACAGCCTACCTCAGTGGTGGACAAGGCCA
CAGCCTGGAGCCCTCCCAACAGATCCTGCCGGCCAGCCTGGCCTAGAGAGAAGAGGCACCAGTC
CGAGTCTCTAGAAGATAGTTCTCCTTGCTTCAGCAGCCTACAGCCCACACTGCCCGCTCCCGGC
ACTGACAACCCTCTGGACTGGCTCTTTGGAAAGTCACAGGAACAGCAGACAGATAGAAGAGATC
TACCCAACAGGACCGGTTCTTCAGGTCACTGGGGTGTGCACAGACAGATGGGCAAGGACTCGGG
GAGGCCTTCTGAGGCCAGGGTACCTGAGTACTCCCTGGGAAGAAAGCCAGGGCACAGGCACCAG
ACCTCCAACCTGAAAAGCTGGACTTCTAGAAAGCCCTGCCAGGCCTTAGCATCCGTCTCCAGCT
CTCGCCCCAGCAGCATCCTAGGCACTCTCTATTTGCATCTCCCAGTGATTCATGAACTCTAACC
CCTCCCCAGAAAAACTCATAAAGAACATGGAGGGTCCTGTGACCTCCCCAGCTTCTCTCTCCTG
TGGTGGACACTTCCTGGTCTGCAGGGATTGGGCAATTAATTCCTGGGGAGACCCATTCTTTAAA
CGGTGATGACAGTCTAGCTCCCACAATGCAGCTTGACTGGTACTGTCTGTTTGTGACTGGCTGG
CCCATGACCTTGAAGTGACTTAGTTTCTCTTCCTTAGTTTTATCACGGTTAAAGTGAGTGTAGG
CGGAATGACTACCTCTCAGATTGCTCTAATAAGGAGATGCGGGCTGTACTCTGAGTGGCAAGAG
TACACAGTTCAGGGTGGCTGCCATAGTCTCACAAGAAACCAAGGGCAAAGGGGCAAGGGAAGGG
TCTCAGCCCCATAAGGCAGACTTTCAACTGTCCTAATGTTGTGACCTTTGAATACAGTTCCTCA
TGCTGTGTGATCCCCAACCATAAAATTATTTTTGTTGCTACTTCATAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001019505	(Get FASTA)	NCBI Sequence Viewer
	XP_006237258	(Get FASTA)	NCBI Sequence Viewer
	XP_006237259	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH87112	(Get FASTA)	NCBI Sequence Viewer
	AAX31278	(Get FASTA)	NCBI Sequence Viewer
	EDM02113	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018133
	ENSRNOP00000018133.3
	ENSRNOP00055013271
	ENSRNOP00060046913
	ENSRNOP00065038578
GenBank Protein	Q5BMD4	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019505 ⟸ NM_001024334
- UniProtKB:	Q5PQM5 (UniProtKB/Swiss-Prot), Q5BMD4 (UniProtKB/Swiss-Prot), A0A0G2JSM9 (UniProtKB/TrEMBL), A6IL27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRLLLPVPHLPTIRETSEELSHGAPGQEPPASPSLDDYVRCICQLAQPTSVVDKATAWSPPN RSCRPAWPREKRHQSESLEDSSPCFSSLQPTLPAPGTDNPLDWLFGKSQEQQTDRRDLPNRTGS SGHWGVHRQMGKDSGRPSEARVPEYSLGRKPGHRHQTSNLKSWTSRKPCQALASVSSSRPSSIL GTLYLHLPVIHEL hide sequence

RefSeq Acc Id:	XP_006237259 ⟸ XM_006237197
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQM5 (UniProtKB/Swiss-Prot), Q5BMD4 (UniProtKB/Swiss-Prot), A0A0G2JSM9 (UniProtKB/TrEMBL), A6IL27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRLLLPVPHLPTIRETSEELSHGAPGQEPPASPSLDDYVRCICQLAQPTSVVDKATAWSPPN RSCRPAWPREKRHQSESLEDSSPCFSSLQPTLPAPGTDNPLDWLFGKSQEQQTDRRDLPNRTGS SGHWGVHRQMGKDSGRPSEARVPEYSLGRKPGHRHQTSNLKSWTSRKPCQALASVSSSRPSSIL GTLYLHLPVIHEL hide sequence

RefSeq Acc Id:	XP_006237258 ⟸ XM_006237196
- Peptide Label:	isoform X1
- UniProtKB:	Q5PQM5 (UniProtKB/Swiss-Prot), Q5BMD4 (UniProtKB/Swiss-Prot), A0A0G2JSM9 (UniProtKB/TrEMBL), A6IL27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRSRLLLPVPHLPTIRETSEELSHGAPGQEPPASPSLDDYVRCICQLAQPTSVVDKATAWSPPN RSCRPAWPREKRHQSESLEDSSPCFSSLQPTLPAPGTDNPLDWLFGKSQEQQTDRRDLPNRTGS SGHWGVHRQMGKDSGRPSEARVPEYSLGRKPGHRHQTSNLKSWTSRKPCQALASVSSSRPSSIL GTLYLHLPVIHEL hide sequence

RefSeq Acc Id:

ENSRNOP00000018133 ⟸ ENSRNOT00000018133

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BMD4-F1-model_v2	AlphaFold	Q5BMD4	1-205	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693337

Promoter ID:

EPDNEW_R3861

Type:

single initiation site

Name:

Depp1_1

Description:

DEPP1, autophagy regulator

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	148,782,466 - 148,782,526	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565700	AgrOrtholog
BioCyc Gene	G2FUF-43279	BioCyc
Ensembl Genes	ENSRNOG00000023465	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOG00055009731	UniProtKB/Swiss-Prot
	ENSRNOG00060032729	UniProtKB/Swiss-Prot
	ENSRNOG00065027258	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000018133.6	UniProtKB/TrEMBL
	ENSRNOT00055016475	UniProtKB/Swiss-Prot
	ENSRNOT00060056748	UniProtKB/Swiss-Prot
	ENSRNOT00065047011	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7193534	IMAGE-MGC_LOAD
InterPro	DEPP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:500300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94732	IMAGE-MGC_LOAD
NCBI Gene	500300	ENTREZGENE
PANTHER	PROTEIN DEPP1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15426	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DEPP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Depp1	PhenoGen
RatGTEx	ENSRNOG00000023465	RatGTEx
	ENSRNOG00055009731	RatGTEx
	ENSRNOG00060032729	RatGTEx
	ENSRNOG00065027258	RatGTEx
UniProt	A0A0G2JSM9	ENTREZGENE, UniProtKB/TrEMBL
	A6IL27	ENTREZGENE, UniProtKB/TrEMBL
	DEPP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5PQM5	ENTREZGENE
UniProt Secondary	Q5PQM5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-09-30	Depp1	DEPP autophagy regulator 1	Depp1	DEPP1, autophagy regulator	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2017-11-17	Depp1	DEPP1, autophagy regulator	LOC500300	similar to hypothetical protein MGC6835	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500300	similar to hypothetical protein MGC6835			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD