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Gene: Sertad4 (SERTA domain containing 4) Rattus norvegicus

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Symbol:

Sertad4

Name:

SERTA domain containing 4

RGD ID:

1565408

Description:

Predicted to be located in nucleus. Orthologous to human SERTAD4 (SERTA domain containing 4); INTERACTS WITH 3,4-methylenedioxymethamphetamine; alpha-Zearalanol; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC360899; RGD1565408; SERTA domain-containing protein 4; similar to SERTA domain containing 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SERTAD4 (SERTA domain containing 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI
Mus musculus (house mouse):	Sertad4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sertad4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SERTAD4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SERTAD4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sertad4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SERTAD4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SERTAD4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sertad4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sertad4 (SERTA domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SERTAD4 (SERTA domain containing 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sertad4 (SERTA domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sertad4 (SERTA domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sertad4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	106,889,019 - 106,899,777 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	106,889,019 - 106,900,309 (-)	Ensembl				GRCr8
mRatBN7.2	13	104,360,307 - 104,371,064 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	104,360,307 - 104,370,546 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	106,877,959 - 106,888,198 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	108,261,816 - 108,272,055 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	105,479,767 - 105,490,006 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	111,574,545 - 111,585,113 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	111,574,609 - 111,581,019 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	116,126,511 - 116,136,873 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	108,739,942 - 108,750,295 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	103,790,786 - 103,801,020 (-)	NCBI		Celera
Cytogenetic Map	13	q27	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(S)-nicotine (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

chlorpyrifos (ISO)

cisplatin (EXP,ISO)

cobalt atom (ISO)

DDE (ISO)

dioxygen (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

ethanol (ISO)

ethylparaben (ISO)

fulvestrant (ISO)

hydrogen peroxide (ISO)

morphine (ISO)

nickel atom (ISO)

niclosamide (ISO)

nicotine (ISO)

ozone (ISO)

paracetamol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (EXP,ISO)

progesterone (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

tamoxifen (ISO)

tetrachloromethane (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc sulfate (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

nucleoplasm (ISO)

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Sertad4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	106,889,019 - 106,899,777 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	106,889,019 - 106,900,309 (-)	Ensembl				GRCr8
mRatBN7.2	13	104,360,307 - 104,371,064 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	104,360,307 - 104,370,546 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	106,877,959 - 106,888,198 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	108,261,816 - 108,272,055 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	105,479,767 - 105,490,006 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	111,574,545 - 111,585,113 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	111,574,609 - 111,581,019 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	116,126,511 - 116,136,873 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	108,739,942 - 108,750,295 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	103,790,786 - 103,801,020 (-)	NCBI		Celera
Cytogenetic Map	13	q27	NCBI

SERTAD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	210,232,796 - 210,246,631 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	210,232,596 - 210,246,631 (+)	Ensembl			hg38	GRCh38
GRCh37	1	210,406,141 - 210,419,976 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	208,472,818 - 208,483,083 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	206,794,589 - 206,804,833	NCBI
Celera	1	183,629,578 - 183,639,844 (+)	NCBI		Celera
Cytogenetic Map	1	q32.2	NCBI
HuRef	1	181,079,983 - 181,090,160 (+)	NCBI		HuRef
CHM1_1	1	211,678,522 - 211,688,788 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	209,471,480 - 209,485,315 (+)	NCBI		T2T-CHM13v2.0

Sertad4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	192,526,796 - 192,538,060 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	192,526,796 - 192,538,064 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	192,844,469 - 192,855,752 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	192,844,488 - 192,855,756 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	194,670,682 - 194,681,946 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	194,545,212 - 194,556,445 (-)	NCBI		MGSCv36	mm8
Celera	1	199,726,389 - 199,737,652 (-)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI
cM Map	1	97.55	NCBI

Sertad4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955489	1,947,045 - 1,953,970 (-)	Ensembl
ChiLan1.0	NW_004955489	1,947,819 - 1,958,434 (-)	NCBI	ChiLan1.0	ChiLan1.0

SERTAD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	39,168,286 - 39,181,958 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	39,134,527 - 39,148,088 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	185,789,513 - 185,803,679 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	190,663,690 - 190,672,669 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	190,663,690 - 190,672,666 (+)	Ensembl			panPan2	panpan1.1

SERTAD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	8,856,298 - 8,862,280 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	8,856,330 - 8,860,526 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	8,434,005 - 8,445,065 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	8,552,165 - 8,563,192 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	8,551,640 - 8,562,943 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	8,481,124 - 8,492,152 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	8,577,879 - 8,588,924 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	8,714,991 - 8,726,067 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sertad4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	65,648,427 - 65,655,846 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	2,888,473 - 2,895,492 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	2,888,574 - 2,895,867 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SERTAD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	132,737,299 - 132,748,448 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	132,737,291 - 132,748,443 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	145,772,676 - 145,783,649 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SERTAD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	19,224,996 - 19,238,427 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	19,224,806 - 19,233,425 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	19,787,524 - 19,800,998 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sertad4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624807	1,751,506 - 1,760,634 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sertad4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	70,829,522 - 70,840,445 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	32
Interacting mature miRNAs:	32
Transcripts:	ENSRNOT00000005234
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH143426

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	104,360,663 - 104,360,764 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	111,574,902 - 111,575,002	NCBI	Rnor6.0
Rnor_5.0	13	116,126,868 - 116,126,968	UniSTS	Rnor5.0
RGSC_v3.4	13	108,740,299 - 108,740,399	UniSTS	RGSC3.4
Celera	13	103,791,143 - 103,791,243	UniSTS
RH 3.4 Map	13	793.6	UniSTS
Cytogenetic Map	13	q27	UniSTS

AI851948

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	104,360,627 - 104,360,720 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	111,574,866 - 111,574,958	NCBI	Rnor6.0
Rnor_5.0	13	116,126,832 - 116,126,924	UniSTS	Rnor5.0
RGSC_v3.4	13	108,740,263 - 108,740,355	UniSTS	RGSC3.4
Celera	13	103,791,107 - 103,791,199	UniSTS
Cytogenetic Map	13	q27	UniSTS

RH136943

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	104,372,212 - 104,372,376 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	111,586,396 - 111,586,559	NCBI	Rnor6.0
Rnor_5.0	13	116,138,500 - 116,138,663	UniSTS	Rnor5.0
RGSC_v3.4	13	108,752,159 - 108,752,322	UniSTS	RGSC3.4
Celera	13	103,802,770 - 103,802,933	UniSTS
RH 3.4 Map	13	799.7	UniSTS
Cytogenetic Map	13	q27	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	154	91	90	59	32	59	6	296	132	11	130	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000077981 ⟹ ENSRNOP00000073970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	106,889,019 - 106,899,258 (-)	Ensembl
mRatBN7.2 Ensembl	13	104,360,307 - 104,370,546 (-)	Ensembl
Rnor_6.0 Ensembl	13	111,574,609 - 111,581,019 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000083072 ⟹ ENSRNOP00000073882

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	13	111,576,452 - 111,581,018 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000136550 ⟹ ENSRNOP00000105375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	106,889,019 - 106,900,309 (-)	Ensembl

RefSeq Acc Id:

NM_001108351 ⟹ NP_001101821

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	106,889,019 - 106,899,258 (-)	NCBI
mRatBN7.2	13	104,360,307 - 104,370,546 (-)	NCBI
Rnor_6.0	13	111,574,545 - 111,584,769 (-)	NCBI
Rnor_5.0	13	116,126,511 - 116,136,873 (-)	NCBI
RGSC_v3.4	13	108,739,942 - 108,750,295 (-)	RGD
Celera	13	103,790,786 - 103,801,020 (-)	RGD

Sequence:

show sequence

GCCCACGCCCCCGCCTTTACCAGCCTCCTCGGCCCCGCAACTTTCCCGAGCGCCCCACATCAGG
AGCGGGGCACCAAGGTCCACCCTAGCTCTAGCGGCGCGCACAGCGCGGGCGGCAGCAGCTCGGC
GAAGGACCAGGGCAGCTGCGGGCTGGAGTGTGGCCCTGCCAGCCGCTATCTAAGGCTGTTAGAG
ATGACGCTGGTTCTGTCCATGAATAGATTCTGCGAGCCCATTGTCTCAGAAGGAGCTGCTGAAA
TTGCCGGGTACCACACACTATGGGAGGCTGACAGCTACGGAGGTGCGAGCCCCCCAGGGCCAGC
ACATGTTCCTTCACAGGGAGACCGGGGAGCCGGCCCACAACTGGCAGGATCACATTACAGGGGG
ATTTCAAACCCTGTAAGCACACCCAAGGTCACGTACTTCAAGAGGAAGTATGCGGAAGAAGAGG
AGCTTCCCACACCGCTCAGCAGCTGCAGCCATAAGACCATCTCCATTTTTGAGGAGCGAGCACA
CATCCTTTACATGTCCTTGGAGAAACTCAGGTTCATCGATGACCCAGAAGTGTACCTGCGAAGG
TCAGTCCTTATCAACAATCTGATGAAGAGGATCCACGGGGAGATCGTCATGCAGAACAGCTGGT
ACCTCCCTGCCTGCTCCCTCAGTGGCACCTCTGCCCAAGAGTGGTTCCTGGCTCAAGACTGTCC
TTACCGGAAACGGCCCCGGGTGGCCAAACAGGAGTGGGAAAAGTTCCACACTTGCTGTTTTTAC
CAGGAGTGTGGCGGTCACTGCCTGAACCTACCCCTCTCTGTCAGTGATGGTGTCGGAAGCGCTT
CGGCCGCTGCCGTGGCCTCACCTGCTTCTTCCTCTTCCTCCCCATCCACCTCTTCTCCATCCTC
CCCATCCTCCTCGTCCTCGTCCTTGTCCTCCCCTCTGCCTCTGCCCAGTTGTTCCCACCACGTG
GACTTTGACGTAGGCAGTGCGCCTATTTACAAGAGCCAAGTTCCTGCCAGCGAAATCTTTGTCA
CTAACGTTAGGTCGCTTGGTGTCCAGGAAAAGATCAAGTTCAACAGCGACGGGAAAGTAAGTCA
CGAAACCAGCAGAGATGGCAACGCCCTGGGCCAAGAACCTGTGGGAAACGACCTCGATTTTGAG
TGCAAAGGCCAATTTTATGATTATTTCGAGACTGGATATACCGAGAGAAACCGTATGAGTGAGT
CTTGGAAAAAGTCTTTGAGGAAAAAGGAGCTTTCCCCAAGCAACAAACTGTGCTGCAGCAGAGG
GGGTAAAATGTGACCCCCCCTCCCCCACCCCCAACTGGCGCAGAAGCACGCACAGCATGATCGG
TTTTTACTTTGGGTTTTGTAGTTTTGTACAACCGATAAAATCACGCAGTGAACACGCCCGGTCG
TCTCACTGCCCGGAGAGCAGATTGCACAAAACATCTGTACAGTAGGCATCCACAAGCCACTTAT
TAATGTGATTTTTGCCAAGGAAAGCCAACTTCATGTTTCAAAGTATATCCTAGTTTCCTTTTTT
TCTAAAAAAAAAAAAATTAAAAAAAAAAATCAGTAGAGTAGATCGAAGACAACATGCCCTTGTT
ATGTTCCCACTGCCCCTCCACGGAGCCTGCCGCTAGCCAAGTTCAACATGTTTGCCGGTTAATT
AGGTAGTTACTTGGTAAACAAATCAATATAACCAGCAAAGGTGCCTGCTTCGATGTGATACGGT
ATTTTTTCCCCCTGAGTGAAAGACTGAAGGCAGGAAGCTAGATGAAGTGGTTTCGTGAGCTGTG
ACATGTTTGTACTGGACAGGTTGGGGCGAAATGAAGCACACCTGTCAGGCAGCAGTCTAGGCTC
TGTGGAGTCAGTTCCCTACAAGCTCCTGGCTTGCCTGTGATGGCTAGTGGGTGGCTAGAGAGGG
GTGTGCAGGGCCACCTCTGACGGGGTCACAGGGAGGTGATGTACAGAGCCGTCTCTGATGGGGC
GAGTAGGAGGTGGCACACAGAGCCATCTTTGATGGGGTGGCTAGAGAGGTGGCGTACAGGGCCA
TCTTGGTGATGGGGTGATAGGTGGCGTATAGGGCCATCTTGGGTGCCTTACTTTATCTTAATTT
TTGCCAGTGTGAAAATTAAGGACGAATCAGAGTTACAGCAGGGATTTGACAAAACACAGGGTGG
ATCCATGCAGTTTGGAAGCTTAACTTTGAACTATCGTGTTCAACTTTCAAGTTACCCTCCCCCT
TTTTCCTTTGTTTATGACTAAGCCCAGTGGCTGTGAGTCTGATATTTTTGCGTAGAGACGGAGA
AGACAGTGGGGAAGGCCATCAGGAACAGAGAAGGCTGCCTGGGTTCTCCATGGCAACGAGCGGT
TGCTGGGTCTGGACTCTCCCAGCTTTGGGCTGTTTTGTTTCCTTGTCCAGTGACATTCACAGCC
CGTGCGTGGCATGCGTTATATTTTTGACCTGTTTTTGCATCATTTCATGCGTTTAGACTCTTAA
GAGCATGTGGTTTCTATATACGAATTTTTGCTGTTGATTGAGAAGCACAATGTTAATAGATTAT
GTGGTGATCAATATGTTTTATCTTAAAGAATGTAAAGGTTTGTAGGTTGCTGAACGTTATTTTG
GAGAAATGGGGCTCTCTCGTCATTGATACTGTTGTGTATTTGGCCGACACACTCCTCAATACCT
TGAATTTGCACATTGGCAAGTGTCCTCAGTGCTACTCTGGAGCAGTCCCACCAGCTCCCCGTGA
ACTACTCCCATCTCCAAGGCCAAGGACTGGTCTGGGTGACCTGGGTCTCTTAAAAACCATTATT
TACAGGAAACAAATGCCAAAAGGAAGAAATAGGTAAGTTCTCCCACTTTCTCCAAGATGAAGCT
TTTTAATTATTGCTATTGATATTAAATAGGTCTCATTCATACAGTGTATGAGTAGATCGTTTGG
GCAATTGTCCGCAAGGACCAATTTTCTAAAGATGTTCCTGTGTTATGGCTGAATAGTCTAGTAA
TGTCTCGTCCTTTATTTTCAATATTTGATGAACATTTTGGTGTTGGAAATTTAGCTGATAGATG
CTTGTACATGACTGTGTTGTAATATAGTGAGGTTTTCTTGATATATATTTATTAAAACGATCAA
AATTCATTACGTTTTTACAAATTTCATTTTAGTGGCTATTTCTCTTTTTCGTGTTTTTCTG

hide sequence

RefSeq Acc Id:

XM_039090943 ⟹ XP_038946871

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	106,889,074 - 106,899,777 (-)	NCBI
mRatBN7.2	13	104,360,362 - 104,371,064 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101821	(Get FASTA)	NCBI Sequence Viewer
	NP_001423856	(Get FASTA)	NCBI Sequence Viewer
	XP_038946871	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL95021	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000073970
	ENSRNOP00000073970.2
	ENSRNOP00000105375.1

RefSeq Acc Id:

NP_001101821 ⟸ NM_001108351

- UniProtKB:

A0A0G2K6W8 (UniProtKB/TrEMBL), A6JH15 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTLVLSMNRFCEPIVSEGAAEIAGYHTLWEADSYGGASPPGPAHVPSQGDRGAGPQLAGSHYRG
ISNPVSTPKVTYFKRKYAEEEELPTPLSSCSHKTISIFEERAHILYMSLEKLRFIDDPEVYLRR
SVLINNLMKRIHGEIVMQNSWYLPACSLSGTSAQEWFLAQDCPYRKRPRVAKQEWEKFHTCCFY
QECGGHCLNLPLSVSDGVGSASAAAVASPASSSSSPSTSSPSSPSSSSSSLSSPLPLPSCSHHV
DFDVGSAPIYKSQVPASEIFVTNVRSLGVQEKIKFNSDGKVSHETSRDGNALGQEPVGNDLDFE
CKGQFYDYFETGYTERNRMSESWKKSLRKKELSPSNKLCCSRGGKM

hide sequence

Ensembl Acc Id:

ENSRNOP00000073882 ⟸ ENSRNOT00000083072

Ensembl Acc Id:

ENSRNOP00000073970 ⟸ ENSRNOT00000077981

RefSeq Acc Id:	XP_038946871 ⟸ XM_039090943
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000105375 ⟸ ENSRNOT00000136550

Protein Domains

SERTA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2K6W8-F1-model_v2	AlphaFold	A0A0G2K6W8	1-361	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1565408	AgrOrtholog
BioCyc Gene	G2FUF-16803	BioCyc
Ensembl Genes	ENSRNOG00000060773	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000077981	ENTREZGENE
	ENSRNOT00000077981.3	UniProtKB/TrEMBL
	ENSRNOT00000136550.1	UniProtKB/TrEMBL
InterPro	SERTA_dom	UniProtKB/TrEMBL
	SERTAD4	UniProtKB/TrEMBL
KEGG Report	rno:360899	UniProtKB/TrEMBL
NCBI Gene	360899	ENTREZGENE
PANTHER	PTHR14272	UniProtKB/TrEMBL
	SERTA DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
Pfam	SERTA	UniProtKB/TrEMBL
PhenoGen	Sertad4	PhenoGen
PROSITE	SERTA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000060773	RatGTEx
UniProt	A0A0G2K6W8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LNP9_RAT	UniProtKB/TrEMBL
	A6JH15	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Sertad4	SERTA domain containing 4	RGD1565408_predicted	similar to SERTA domain containing 4 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1565408_predicted	similar to SERTA domain containing 4 (predicted)	LOC360899	similar to SERTA domain containing 4	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC360899	similar to SERTA domain containing 4			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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