Erp27 (endoplasmic reticulum protein 27) - Rat Genome Database

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Gene: Erp27 (endoplasmic reticulum protein 27) Rattus norvegicus
Analyze
Symbol: Erp27
Name: endoplasmic reticulum protein 27
RGD ID: 1565381
Description: Predicted to be involved in protein folding and response to endoplasmic reticulum stress. Predicted to be located in endoplasmic reticulum lumen. Predicted to be active in endoplasmic reticulum. Orthologous to human ERP27 (endoplasmic reticulum protein 27); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: endoplasmic reticulum resident protein 27; LOC297698; RGD1565381; similar to RIKEN cDNA 1810033M07
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,535,845 - 171,552,848 (-)NCBIGRCr8
mRatBN7.24169,804,656 - 169,821,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,804,658 - 169,821,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,099,696 - 176,116,814 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,881,113 - 171,898,110 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,505,365 - 170,522,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,893,946 - 170,912,629 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,893,946 - 170,912,629 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,150,711 - 235,169,448 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,948,853 - 173,966,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,387,137 - 158,404,147 (-)NCBICelera
Cytogenetic Map4q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1-Hydroxypyrene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-dichloroaniline  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
Dibutyl phosphate  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
diuron  (ISO)
dorsomorphin  (ISO)
entinostat  (ISO)
epoxiconazole  (ISO)
fonofos  (ISO)
genistein  (EXP,ISO)
gentamycin  (EXP)
mercury dibromide  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
parathion  (ISO)
PCB138  (EXP)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
progesterone  (ISO)
propanal  (ISO)
quercetin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
terbufos  (ISO)
testosterone  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
troglitazone  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)
zearalenone  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Erp27
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84171,535,845 - 171,552,848 (-)NCBIGRCr8
mRatBN7.24169,804,656 - 169,821,660 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4169,804,658 - 169,821,660 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,099,696 - 176,116,814 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04171,881,113 - 171,898,110 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04170,505,365 - 170,522,479 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04170,893,946 - 170,912,629 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4170,893,946 - 170,912,629 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04235,150,711 - 235,169,448 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44173,948,853 - 173,966,545 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4158,387,137 - 158,404,147 (-)NCBICelera
Cytogenetic Map4q43NCBI
ERP27
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381214,914,039 - 14,938,537 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1214,914,039 - 14,938,537 (-)EnsemblGRCh38hg38GRCh38
GRCh371215,066,973 - 15,091,471 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361214,958,245 - 14,982,722 (-)NCBINCBI36Build 36hg18NCBI36
Celera1220,211,961 - 20,236,462 (-)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1214,836,429 - 14,860,831 (-)NCBIHuRef
CHM1_11215,033,060 - 15,057,554 (-)NCBICHM1_1
T2T-CHM13v2.01214,791,381 - 14,815,874 (-)NCBIT2T-CHM13v2.0
Erp27
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396136,884,312 - 136,899,465 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6136,884,309 - 136,899,178 (-)EnsemblGRCm39 Ensembl
GRCm386136,907,314 - 136,922,461 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6136,907,311 - 136,922,180 (-)EnsemblGRCm38mm10GRCm38
MGSCv376136,855,908 - 136,870,701 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366136,871,583 - 136,886,376 (-)NCBIMGSCv36mm8
Celera6139,946,928 - 139,962,190 (-)NCBICelera
Cytogenetic Map6G1NCBI
cM Map666.72NCBI
Erp27
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541311,650,991 - 11,669,968 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541311,650,920 - 11,670,127 (-)NCBIChiLan1.0ChiLan1.0
ERP27
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21020,362,399 - 20,386,939 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11220,359,160 - 20,383,700 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01214,916,781 - 14,940,991 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11215,313,546 - 15,337,989 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1215,313,546 - 15,337,989 (-)Ensemblpanpan1.1panPan2
ERP27
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12731,682,586 - 31,702,959 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2731,682,896 - 31,702,773 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2714,746,020 - 14,766,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02731,989,217 - 32,009,577 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2731,989,378 - 32,009,383 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12731,878,591 - 31,898,917 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02731,837,047 - 31,857,394 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02714,478,223 - 14,498,576 (-)NCBIUU_Cfam_GSD_1.0
Erp27
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494592,822,735 - 92,840,148 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365872,550,604 - 2,567,150 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365872,550,649 - 2,567,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ERP27
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl557,599,802 - 57,626,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1557,599,497 - 57,626,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2560,988,503 - 61,015,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ERP27
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11114,810,071 - 14,836,427 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1114,811,473 - 14,826,652 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606920,472,804 - 20,500,419 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Erp27
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475223,091,620 - 23,107,923 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475223,091,620 - 23,108,890 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Erp27
234 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:59
Interacting mature miRNAs:62
Transcripts:ENSRNOT00000055691
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat

Markers in Region
D4Wox38  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,823,287 - 169,823,344 (+)MAPPERmRatBN7.2
Rnor_6.04170,914,257 - 170,914,313NCBIRnor6.0
Rnor_5.04235,171,076 - 235,171,132UniSTSRnor5.0
RGSC_v3.44173,968,173 - 173,968,229UniSTSRGSC3.4
Celera4158,405,775 - 158,405,831UniSTS
Cytogenetic Map4q43UniSTS
RH130748  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24169,823,007 - 169,823,194 (+)MAPPERmRatBN7.2
Rnor_6.04170,913,977 - 170,914,163NCBIRnor6.0
Rnor_5.04235,170,796 - 235,170,982UniSTSRnor5.0
RGSC_v3.44173,967,893 - 173,968,079UniSTSRGSC3.4
Celera4158,405,495 - 158,405,681UniSTS
RH 3.4 Map41023.3UniSTS
Cytogenetic Map4q43UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 6 47 45 62 62 32 25 32 5 166 89 27 31 53 30

Sequence


Ensembl Acc Id: ENSRNOT00000055691   ⟹   ENSRNOP00000052551
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4169,804,658 - 169,821,660 (-)Ensembl
Rnor_6.0 Ensembl4170,893,946 - 170,912,629 (-)Ensembl
RefSeq Acc Id: NM_001106625   ⟹   NP_001100095
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,535,847 - 171,552,848 (-)NCBI
mRatBN7.24169,804,658 - 169,821,660 (-)NCBI
Rnor_6.04170,893,946 - 170,912,629 (-)NCBI
Rnor_5.04235,150,711 - 235,169,448 (-)NCBI
RGSC_v3.44173,948,853 - 173,966,545 (-)RGD
Celera4158,387,137 - 158,404,147 (-)RGD
Sequence:
RefSeq Acc Id: XM_039107460   ⟹   XP_038963388
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84171,535,845 - 171,552,380 (-)NCBI
mRatBN7.24169,804,656 - 169,821,200 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001100095 (Get FASTA)   NCBI Sequence Viewer  
  XP_038963388 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01595 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000052551.2
RefSeq Acc Id: NP_001100095   ⟸   NM_001106625
- Peptide Label: precursor
- UniProtKB: D4A9L9 (UniProtKB/TrEMBL),   A6IMJ4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000052551   ⟸   ENSRNOT00000055691
RefSeq Acc Id: XP_038963388   ⟸   XM_039107460
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9L9-F1-model_v2 AlphaFold D4A9L9 1-272 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693468
Promoter ID:EPDNEW_R3993
Type:initiation region
Name:Erp27_1
Description:endoplasmic reticulum protein 27
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04170,912,613 - 170,912,673EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1565381 AgrOrtholog
BioCyc Gene G2FUF-42590 BioCyc
Ensembl Genes ENSRNOG00000005787 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000055691.3 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
InterPro Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report rno:297698 UniProtKB/TrEMBL
NCBI Gene 297698 ENTREZGENE
PANTHER ENDOPLASMIC RETICULUM RESIDENT PROTEIN 27 UniProtKB/TrEMBL
  PROTEIN DISULFIDE ISOMERASE UniProtKB/TrEMBL
Pfam Thioredoxin_6 UniProtKB/TrEMBL
PhenoGen Erp27 PhenoGen
RatGTEx ENSRNOG00000005787 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A6IMJ4 ENTREZGENE, UniProtKB/TrEMBL
  D4A9L9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Erp27  endoplasmic reticulum protein 27  RGD1565381_predicted  similar to RIKEN cDNA 1810033M07 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565381_predicted  similar to RIKEN cDNA 1810033M07 (predicted)  LOC297698  similar to RIKEN cDNA 1810033M07  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC297698  similar to RIKEN cDNA 1810033M07      Symbol and Name status set to provisional 70820 PROVISIONAL